Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 Gm6985-201ENSMUST00000121255 271 ntBASIC2,46□□□□□ -2,02
Rnf40Q3U319 Gm10548-202ENSMUST00000165672 272 ntBASIC2,46□□□□□ -2,02
Rnf40Q3U319 Snord45b-201ENSMUST00000082797 71 ntBASIC2,46□□□□□ -2,02
Rnf40Q3U319 Usp9y-201ENSMUST00000091188 8094 ntAPPRIS P1 TSL 1 (best) BASIC2,46□□□□□ -2,02
Rnf40Q3U319 n-R5s63-201ENSMUST00000122756 103 ntBASIC2,45□□□□□ -2,02
Rnf40Q3U319 Gm22039-201ENSMUST00000157278 132 ntBASIC2,45□□□□□ -2,02
Rnf40Q3U319 Gm23672-201ENSMUST00000157471 107 ntBASIC2,45□□□□□ -2,02
Rnf40Q3U319 Gm24547-201ENSMUST00000158649 149 ntBASIC2,45□□□□□ -2,02
Rnf40Q3U319 Gm23291-201ENSMUST00000175611 78 ntBASIC2,45□□□□□ -2,02
Rnf40Q3U319 Gm45452-201ENSMUST00000210905 177 ntBASIC2,45□□□□□ -2,02
Rnf40Q3U319 Gm24661-201ENSMUST00000083205 104 ntBASIC2,45□□□□□ -2,02
Rnf40Q3U319 AC154506.4-201ENSMUST00000224898 3416 ntBASIC2,45□□□□□ -2,02
Rnf40Q3U319 Mir216b-201ENSMUST00000102363 86 ntBASIC2,44□□□□□ -2,02
Rnf40Q3U319 Gm44469-201ENSMUST00000198558 79 ntBASIC2,44□□□□□ -2,02
Rnf40Q3U319 Gm24201-201ENSMUST00000082946 125 ntBASIC2,44□□□□□ -2,02
Rnf40Q3U319 Gm10203-201ENSMUST00000087348 198 ntAPPRIS P1 TSL 5 BASIC2,44□□□□□ -2,02
Rnf40Q3U319 Skint5-202ENSMUST00000169631 4497 ntAPPRIS P5 TSL 1 (best) BASIC2,43□□□□□ -2,02
Rnf40Q3U319 Gm16510-201ENSMUST00000153501 249 ntBASIC2,43□□□□□ -2,02
Rnf40Q3U319 Gm23857-201ENSMUST00000158379 111 ntBASIC2,43□□□□□ -2,02
Rnf40Q3U319 Gm25658-201ENSMUST00000158472 128 ntBASIC2,43□□□□□ -2,02
Rnf40Q3U319 Mir7118-201ENSMUST00000197760 61 ntBASIC2,43□□□□□ -2,02
Rnf40Q3U319 Gm5581-201ENSMUST00000072940 2550 ntBASIC2,43□□□□□ -2,02
Rnf40Q3U319 Gm23950-201ENSMUST00000104026 129 ntBASIC2,42□□□□□ -2,02
Rnf40Q3U319 Gm24983-201ENSMUST00000104457 69 ntBASIC2,41□□□□□ -2,02
Rnf40Q3U319 Gm24915-201ENSMUST00000157288 78 ntBASIC2,41□□□□□ -2,02
Rnf40Q3U319 Gm25056-201ENSMUST00000157372 62 ntBASIC2,41□□□□□ -2,02
Rnf40Q3U319 Gm24725-201ENSMUST00000158229 125 ntBASIC2,41□□□□□ -2,02
Rnf40Q3U319 Gm22500-201ENSMUST00000158982 99 ntBASIC2,41□□□□□ -2,02
Rnf40Q3U319 Gm24154-201ENSMUST00000175261 130 ntBASIC2,41□□□□□ -2,02
Rnf40Q3U319 Gm27549-201ENSMUST00000183508 62 ntBASIC2,41□□□□□ -2,02
Rnf40Q3U319 Gm27517-201ENSMUST00000184347 236 ntBASIC2,41□□□□□ -2,02
Rnf40Q3U319 Mir9-1-201ENSMUST00000199907 89 ntBASIC2,41□□□□□ -2,02
Rnf40Q3U319 AC156794.1-201ENSMUST00000214415 214 ntTSL 5 BASIC2,41□□□□□ -2,02
Rnf40Q3U319 Vmn1r75-205ENSMUST00000228268 4376 ntAPPRIS ALT2 BASIC2,41□□□□□ -2,02
Rnf40Q3U319 Gm22750-201ENSMUST00000102076 103 ntBASIC2,4□□□□□ -2,03
Rnf40Q3U319 Mir741-201ENSMUST00000103931 71 ntBASIC2,4□□□□□ -2,03
Rnf40Q3U319 Gm23951-201ENSMUST00000104029 132 ntBASIC2,4□□□□□ -2,03
Rnf40Q3U319 n-R5s70-201ENSMUST00000122650 116 ntBASIC2,4□□□□□ -2,03
Rnf40Q3U319 Gm22078-201ENSMUST00000157593 103 ntBASIC2,4□□□□□ -2,03
Rnf40Q3U319 Gm24677-201ENSMUST00000158755 150 ntBASIC2,4□□□□□ -2,03
Rnf40Q3U319 Gm25707-201ENSMUST00000175120 96 ntBASIC2,4□□□□□ -2,03
Rnf40Q3U319 Mir3076-201ENSMUST00000175415 60 ntBASIC2,4□□□□□ -2,03
Rnf40Q3U319 Trgj4-201ENSMUST00000184430 61 ntAPPRIS P1 BASIC2,4□□□□□ -2,03
Rnf40Q3U319 Gm27450-201ENSMUST00000104632 90 ntBASIC2,39□□□□□ -2,03
Rnf40Q3U319 Gm25153-201ENSMUST00000157118 156 ntBASIC2,39□□□□□ -2,03
Rnf40Q3U319 Gm24476-201ENSMUST00000157437 131 ntBASIC2,39□□□□□ -2,03
Rnf40Q3U319 Gm25730-201ENSMUST00000178753 165 ntBASIC2,39□□□□□ -2,03
Rnf40Q3U319 Snora69-201ENSMUST00000083708 131 ntBASIC2,39□□□□□ -2,03
Rnf40Q3U319 Gm25186-201ENSMUST00000083909 108 ntBASIC2,39□□□□□ -2,03
Rnf40Q3U319 Gm26257-201ENSMUST00000122500 107 ntBASIC2,38□□□□□ -2,03
Rnf40Q3U319 Gm22203-201ENSMUST00000158605 58 ntBASIC2,38□□□□□ -2,03
Rnf40Q3U319 Gm25958-201ENSMUST00000175114 71 ntBASIC2,38□□□□□ -2,03
Rnf40Q3U319 Gm26139-201ENSMUST00000180098 107 ntBASIC2,38□□□□□ -2,03
Rnf40Q3U319 B230307C23Rik-201ENSMUST00000113729 192 ntTSL 5 BASIC2,37□□□□□ -2,03
Rnf40Q3U319 Gm26247-201ENSMUST00000116702 91 ntBASIC2,37□□□□□ -2,03
Rnf40Q3U319 Gm22802-201ENSMUST00000175621 89 ntBASIC2,37□□□□□ -2,03
Rnf40Q3U319 Gm22809-201ENSMUST00000082743 156 ntBASIC2,37□□□□□ -2,03
Rnf40Q3U319 Knl1-202ENSMUST00000028802 7800 ntAPPRIS P1 TSL 5 BASIC2,37□□□□□ -2,03
Rnf40Q3U319 Gm37824-201ENSMUST00000193430 3236 ntBASIC2,37□□□□□ -2,03
Rnf40Q3U319 Gm23128-201ENSMUST00000104257 132 ntBASIC2,36□□□□□ -2,03
Rnf40Q3U319 Gm23172-201ENSMUST00000157160 124 ntBASIC2,36□□□□□ -2,03
Rnf40Q3U319 Gm25366-201ENSMUST00000158845 124 ntBASIC2,36□□□□□ -2,03
Rnf40Q3U319 Gm23128-202ENSMUST00000196578 133 ntBASIC2,36□□□□□ -2,03
Rnf40Q3U319 Mir7217-201ENSMUST00000200304 62 ntBASIC2,36□□□□□ -2,03
Rnf40Q3U319 AC122428.1-201ENSMUST00000213709 217 ntTSL 3 BASIC2,36□□□□□ -2,03
Rnf40Q3U319 Mir15b-201ENSMUST00000083646 64 ntBASIC2,36□□□□□ -2,03
Rnf40Q3U319 Olfr851-202ENSMUST00000214130 7123 ntAPPRIS P1 TSL 5 BASIC2,35□□□□□ -2,03
Rnf40Q3U319 Olfr805-204ENSMUST00000217219 3314 ntAPPRIS P1 TSL 5 BASIC2,35□□□□□ -2,03
Rnf40Q3U319 Gm23072-201ENSMUST00000158243 123 ntBASIC2,35□□□□□ -2,03
Rnf40Q3U319 Gm25528-201ENSMUST00000180264 132 ntBASIC2,35□□□□□ -2,03
Rnf40Q3U319 Snord7-201ENSMUST00000083781 97 ntBASIC2,35□□□□□ -2,03
Rnf40Q3U319 Gm36956-201ENSMUST00000193830 214 ntBASIC2,34□□□□□ -2,03
Rnf40Q3U319 Gm43907-201ENSMUST00000203128 117 ntBASIC2,34□□□□□ -2,03
Rnf40Q3U319 Snora75-201ENSMUST00000082903 133 ntBASIC2,34□□□□□ -2,03
Rnf40Q3U319 Mirlet7c-1-201ENSMUST00000083623 94 ntBASIC2,34□□□□□ -2,03
Rnf40Q3U319 Gm24670-201ENSMUST00000104154 132 ntBASIC2,33□□□□□ -2,04
Rnf40Q3U319 Gm23106-201ENSMUST00000157554 101 ntBASIC2,33□□□□□ -2,04
Rnf40Q3U319 Gm23100-201ENSMUST00000083455 141 ntBASIC2,33□□□□□ -2,04
Rnf40Q3U319 Olfr921-203ENSMUST00000217114 4120 ntAPPRIS P1 TSL 2 BASIC2,32□□□□□ -2,04
Rnf40Q3U319 AC164629.4-201ENSMUST00000218505 3247 ntBASIC2,32□□□□□ -2,04
Rnf40Q3U319 Gm24122-201ENSMUST00000104107 132 ntBASIC2,32□□□□□ -2,04
Rnf40Q3U319 Gm22664-201ENSMUST00000158719 105 ntBASIC2,32□□□□□ -2,04
Rnf40Q3U319 Gm37579-201ENSMUST00000194291 142 ntBASIC2,32□□□□□ -2,04
Rnf40Q3U319 Gm44948-201ENSMUST00000209050 149 ntBASIC2,32□□□□□ -2,04
Rnf40Q3U319 Gm43885-201ENSMUST00000204928 2542 ntBASIC2,31□□□□□ -2,04
Rnf40Q3U319 Olfr8-203ENSMUST00000214952 3407 ntAPPRIS P1 TSL 5 BASIC2,31□□□□□ -2,04
Rnf40Q3U319 Gm22788-201ENSMUST00000157876 61 ntBASIC2,31□□□□□ -2,04
Rnf40Q3U319 Gm26089-201ENSMUST00000157898 107 ntBASIC2,31□□□□□ -2,04
Rnf40Q3U319 Gm22406-201ENSMUST00000174923 93 ntBASIC2,31□□□□□ -2,04
Rnf40Q3U319 Mir468-201ENSMUST00000197332 78 ntBASIC2,31□□□□□ -2,04
Rnf40Q3U319 Gm22030-201ENSMUST00000116942 63 ntBASIC2,3□□□□□ -2,04
Rnf40Q3U319 Gm24900-201ENSMUST00000158128 134 ntBASIC2,3□□□□□ -2,04
Rnf40Q3U319 Gm22666-201ENSMUST00000158717 164 ntBASIC2,3□□□□□ -2,04
Rnf40Q3U319 Gm23630-201ENSMUST00000175292 104 ntBASIC2,3□□□□□ -2,04
Rnf40Q3U319 Gm23419-201ENSMUST00000175523 84 ntBASIC2,3□□□□□ -2,04
Rnf40Q3U319 Gm22801-201ENSMUST00000175624 84 ntBASIC2,3□□□□□ -2,04
Rnf40Q3U319 Mir544-201ENSMUST00000103813 78 ntBASIC2,29□□□□□ -2,04
Rnf40Q3U319 Mir7021-201ENSMUST00000197026 63 ntBASIC2,29□□□□□ -2,04
Rnf40Q3U319 AC155839.1-201ENSMUST00000200105 147 ntBASIC2,29□□□□□ -2,04
Rnf40Q3U319 Olfr805-203ENSMUST00000216794 3199 ntAPPRIS P1 TSL 5 BASIC2,29□□□□□ -2,04
Retrieved 100 of 76,532 protein–RNA pairs in 90,7 ms