Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Gm22559-201ENSMUST00000157329 134 ntBASIC1.53□□□□□ -2.16
Ddb1Q3U1J4 Gm16307-201ENSMUST00000161269 210 ntBASIC1.53□□□□□ -2.16
Ddb1Q3U1J4 Traj60-201ENSMUST00000167781 54 ntBASIC1.53□□□□□ -2.16
Ddb1Q3U1J4 Gm24575-201ENSMUST00000175502 77 ntBASIC1.53□□□□□ -2.16
Ddb1Q3U1J4 Mir6369-201ENSMUST00000183772 106 ntBASIC1.53□□□□□ -2.16
Ddb1Q3U1J4 Gm27711-201ENSMUST00000183802 118 ntBASIC1.53□□□□□ -2.16
Ddb1Q3U1J4 A730009L09Rik-202ENSMUST00000210306 201 ntAPPRIS ALT2 TSL 5 BASIC1.53□□□□□ -2.16
Ddb1Q3U1J4 AC122769.2-201ENSMUST00000227248 302 ntBASIC1.53□□□□□ -2.16
Ddb1Q3U1J4 Defb38-201ENSMUST00000066416 286 ntAPPRIS P1 TSL 1 (best) BASIC1.53□□□□□ -2.16
Ddb1Q3U1J4 Mir219a-2-201ENSMUST00000083551 97 ntBASIC1.53□□□□□ -2.16
Ddb1Q3U1J4 Gm25495-201ENSMUST00000104431 131 ntBASIC1.52□□□□□ -2.17
Ddb1Q3U1J4 Gm24649-201ENSMUST00000157106 134 ntBASIC1.52□□□□□ -2.17
Ddb1Q3U1J4 Gm25887-201ENSMUST00000157777 84 ntBASIC1.52□□□□□ -2.17
Ddb1Q3U1J4 Gm23838-201ENSMUST00000158067 162 ntBASIC1.52□□□□□ -2.17
Ddb1Q3U1J4 Traj13-201ENSMUST00000103728 57 ntAPPRIS P1 BASIC1.51□□□□□ -2.17
Ddb1Q3U1J4 Gm25787-201ENSMUST00000104709 92 ntBASIC1.51□□□□□ -2.17
Ddb1Q3U1J4 Gm24509-201ENSMUST00000157086 101 ntBASIC1.51□□□□□ -2.17
Ddb1Q3U1J4 Gm25358-201ENSMUST00000157189 101 ntBASIC1.51□□□□□ -2.17
Ddb1Q3U1J4 Gm16550-201ENSMUST00000162550 126 ntBASIC1.51□□□□□ -2.17
Ddb1Q3U1J4 Gm38074-201ENSMUST00000193467 145 ntTSL 5 BASIC1.51□□□□□ -2.17
Ddb1Q3U1J4 Gm14400-201ENSMUST00000117234 2135 ntBASIC1.51□□□□□ -2.17
Ddb1Q3U1J4 Gm23065-201ENSMUST00000158236 130 ntBASIC1.5□□□□□ -2.17
Ddb1Q3U1J4 Gm24947-201ENSMUST00000158334 110 ntBASIC1.5□□□□□ -2.17
Ddb1Q3U1J4 Gm22809-201ENSMUST00000082743 156 ntBASIC1.5□□□□□ -2.17
Ddb1Q3U1J4 AC127302.3-201ENSMUST00000215480 2791 ntBASIC1.5□□□□□ -2.17
Ddb1Q3U1J4 Gm16399-201ENSMUST00000181423 219 ntBASIC1.49□□□□□ -2.17
Ddb1Q3U1J4 Gm44734-201ENSMUST00000206025 237 ntTSL 5 BASIC1.49□□□□□ -2.17
Ddb1Q3U1J4 Olfr1154-203ENSMUST00000215862 2624 ntAPPRIS P1 TSL 5 BASIC1.49□□□□□ -2.17
Ddb1Q3U1J4 Scarna9-201ENSMUST00000104318 70 ntBASIC1.48□□□□□ -2.17
Ddb1Q3U1J4 Gm23893-201ENSMUST00000158106 134 ntBASIC1.48□□□□□ -2.17
Ddb1Q3U1J4 Mir21c-201ENSMUST00000184910 78 ntBASIC1.48□□□□□ -2.17
Ddb1Q3U1J4 Mir468-201ENSMUST00000197332 78 ntBASIC1.48□□□□□ -2.17
Ddb1Q3U1J4 Olfr820-203ENSMUST00000215791 3956 ntAPPRIS P1 TSL 5 BASIC1.47□□□□□ -2.17
Ddb1Q3U1J4 Olfr307-203ENSMUST00000217494 4515 ntAPPRIS P1 TSL 5 BASIC1.47□□□□□ -2.17
Ddb1Q3U1J4 Mir802-201ENSMUST00000103258 97 ntBASIC1.47□□□□□ -2.17
Ddb1Q3U1J4 Mir764-201ENSMUST00000103259 108 ntBASIC1.47□□□□□ -2.17
Ddb1Q3U1J4 Gm15654-201ENSMUST00000152660 300 ntBASIC1.47□□□□□ -2.17
Ddb1Q3U1J4 Gm23986-201ENSMUST00000157144 63 ntBASIC1.47□□□□□ -2.17
Ddb1Q3U1J4 Gm23114-201ENSMUST00000158478 117 ntBASIC1.47□□□□□ -2.17
Ddb1Q3U1J4 Gm42935-201ENSMUST00000202004 151 ntBASIC1.47□□□□□ -2.17
Ddb1Q3U1J4 Gm26224-201ENSMUST00000082506 80 ntBASIC1.47□□□□□ -2.17
Ddb1Q3U1J4 Gm23245-201ENSMUST00000083370 135 ntBASIC1.47□□□□□ -2.17
Ddb1Q3U1J4 Mir532-201ENSMUST00000093630 96 ntBASIC1.47□□□□□ -2.17
Ddb1Q3U1J4 Gm25416-201ENSMUST00000104221 107 ntBASIC1.46□□□□□ -2.18
Ddb1Q3U1J4 Gm11857-201ENSMUST00000119817 324 ntBASIC1.46□□□□□ -2.18
Ddb1Q3U1J4 Gm25370-201ENSMUST00000158159 94 ntBASIC1.46□□□□□ -2.18
Ddb1Q3U1J4 Gm22944-201ENSMUST00000158662 133 ntBASIC1.46□□□□□ -2.18
Ddb1Q3U1J4 Gm27420-201ENSMUST00000183823 79 ntBASIC1.46□□□□□ -2.18
Ddb1Q3U1J4 Gm44396-201ENSMUST00000199843 114 ntBASIC1.46□□□□□ -2.18
Ddb1Q3U1J4 Gm44948-201ENSMUST00000209050 149 ntBASIC1.46□□□□□ -2.18
Ddb1Q3U1J4 Gm24524-201ENSMUST00000082925 170 ntBASIC1.46□□□□□ -2.18
Ddb1Q3U1J4 Zfp813-ps-201ENSMUST00000186652 2506 ntBASIC1.46□□□□□ -2.18
Ddb1Q3U1J4 Mir30f-201ENSMUST00000196073 92 ntBASIC1.45□□□□□ -2.18
Ddb1Q3U1J4 Gm43977-201ENSMUST00000203970 189 ntBASIC1.45□□□□□ -2.18
Ddb1Q3U1J4 Gm45265-201ENSMUST00000210852 2497 ntBASIC1.44□□□□□ -2.18
Ddb1Q3U1J4 Gm22770-201ENSMUST00000158368 67 ntBASIC1.44□□□□□ -2.18
Ddb1Q3U1J4 Mir1961-201ENSMUST00000158643 112 ntBASIC1.44□□□□□ -2.18
Ddb1Q3U1J4 Gm17172-201ENSMUST00000171782 190 ntTSL 3 BASIC1.44□□□□□ -2.18
Ddb1Q3U1J4 Mir7-1-201ENSMUST00000083500 108 ntBASIC1.44□□□□□ -2.18
Ddb1Q3U1J4 Mir1a-1-201ENSMUST00000093635 77 ntBASIC1.44□□□□□ -2.18
Ddb1Q3U1J4 Gm24401-201ENSMUST00000157868 91 ntBASIC1.43□□□□□ -2.18
Ddb1Q3U1J4 Gm25978-201ENSMUST00000158698 90 ntBASIC1.43□□□□□ -2.18
Ddb1Q3U1J4 Gm26290-201ENSMUST00000158891 145 ntBASIC1.43□□□□□ -2.18
Ddb1Q3U1J4 Gm23339-201ENSMUST00000158962 139 ntBASIC1.43□□□□□ -2.18
Ddb1Q3U1J4 Gm22887-201ENSMUST00000178586 107 ntBASIC1.43□□□□□ -2.18
Ddb1Q3U1J4 Trbv25-201ENSMUST00000194700 273 ntBASIC1.43□□□□□ -2.18
Ddb1Q3U1J4 Gm23244-201ENSMUST00000083375 92 ntBASIC1.43□□□□□ -2.18
Ddb1Q3U1J4 Mir27b-201ENSMUST00000083541 73 ntBASIC1.43□□□□□ -2.18
Ddb1Q3U1J4 Snhg14-211ENSMUST00000189581 6861 ntTSL 1 (best) BASIC1.43□□□□□ -2.18
Ddb1Q3U1J4 Gm10945-201ENSMUST00000105596 60 ntAPPRIS P1 TSL 5 BASIC1.42□□□□□ -2.18
Ddb1Q3U1J4 Gm24288-201ENSMUST00000157630 144 ntBASIC1.42□□□□□ -2.18
Ddb1Q3U1J4 Gm24808-201ENSMUST00000157993 118 ntBASIC1.42□□□□□ -2.18
Ddb1Q3U1J4 Gm22429-201ENSMUST00000158553 130 ntBASIC1.42□□□□□ -2.18
Ddb1Q3U1J4 Gm22663-201ENSMUST00000158721 102 ntBASIC1.42□□□□□ -2.18
Ddb1Q3U1J4 Gm25899-201ENSMUST00000082672 141 ntBASIC1.42□□□□□ -2.18
Ddb1Q3U1J4 Snord80-201ENSMUST00000083801 81 ntBASIC1.42□□□□□ -2.18
Ddb1Q3U1J4 Gm14039-201ENSMUST00000118705 101 ntBASIC1.41□□□□□ -2.18
Ddb1Q3U1J4 Gm16265-201ENSMUST00000134558 108 ntBASIC1.41□□□□□ -2.18
Ddb1Q3U1J4 Gm26369-201ENSMUST00000157825 100 ntBASIC1.41□□□□□ -2.18
Ddb1Q3U1J4 Gm25166-201ENSMUST00000158909 111 ntBASIC1.41□□□□□ -2.18
Ddb1Q3U1J4 Gm23008-201ENSMUST00000158946 80 ntBASIC1.41□□□□□ -2.18
Ddb1Q3U1J4 Gm25678-201ENSMUST00000174984 73 ntBASIC1.41□□□□□ -2.18
Ddb1Q3U1J4 Gm20118-201ENSMUST00000187207 162 ntBASIC1.41□□□□□ -2.18
Ddb1Q3U1J4 Mir6381-201ENSMUST00000183426 87 ntBASIC1.4□□□□□ -2.19
Ddb1Q3U1J4 CT025630.1-201ENSMUST00000227901 172 ntBASIC1.4□□□□□ -2.19
Ddb1Q3U1J4 Gm22503-201ENSMUST00000158983 115 ntBASIC1.39□□□□□ -2.19
Ddb1Q3U1J4 Gm22980-201ENSMUST00000082608 70 ntBASIC1.39□□□□□ -2.19
Ddb1Q3U1J4 Gm25851-201ENSMUST00000082794 107 ntBASIC1.39□□□□□ -2.19
Ddb1Q3U1J4 Mir324-201ENSMUST00000083600 89 ntBASIC1.39□□□□□ -2.19
Ddb1Q3U1J4 Mir30c-2-201ENSMUST00000083633 84 ntBASIC1.39□□□□□ -2.19
Ddb1Q3U1J4 Gm23130-201ENSMUST00000104252 74 ntBASIC1.38□□□□□ -2.19
Ddb1Q3U1J4 n-R5s70-201ENSMUST00000122650 116 ntBASIC1.38□□□□□ -2.19
Ddb1Q3U1J4 Gm26358-201ENSMUST00000158215 97 ntBASIC1.38□□□□□ -2.19
Ddb1Q3U1J4 Gm25901-201ENSMUST00000158494 130 ntBASIC1.38□□□□□ -2.19
Ddb1Q3U1J4 Fam46d-201ENSMUST00000101292 2995 ntAPPRIS P1 TSL 1 (best) BASIC1.37□□□□□ -2.19
Ddb1Q3U1J4 Mir709-201ENSMUST00000102190 88 ntBASIC1.37□□□□□ -2.19
Ddb1Q3U1J4 Gm23652-201ENSMUST00000116752 107 ntBASIC1.37□□□□□ -2.19
Ddb1Q3U1J4 Gm22212-201ENSMUST00000158096 106 ntBASIC1.37□□□□□ -2.19
Ddb1Q3U1J4 Gm25161-201ENSMUST00000158913 132 ntBASIC1.37□□□□□ -2.19
Ddb1Q3U1J4 Gm22801-201ENSMUST00000175624 84 ntBASIC1.37□□□□□ -2.19
Retrieved 100 of 76,532 protein–RNA pairs in 159.4 ms