Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Gm23434-201ENSMUST00000157179 100 ntBASIC1.11□□□□□ -2.23
ShhQ62226 Gm23783-201ENSMUST00000157941 102 ntBASIC1.11□□□□□ -2.23
ShhQ62226 Gm22485-201ENSMUST00000157990 109 ntBASIC1.11□□□□□ -2.23
ShhQ62226 Gm24547-201ENSMUST00000158649 149 ntBASIC1.11□□□□□ -2.23
ShhQ62226 Gm22944-201ENSMUST00000158662 133 ntBASIC1.11□□□□□ -2.23
ShhQ62226 Gm28767-201ENSMUST00000188601 114 ntBASIC1.11□□□□□ -2.23
ShhQ62226 Snora41-201ENSMUST00000082668 132 ntBASIC1.11□□□□□ -2.23
ShhQ62226 Mir709-201ENSMUST00000102190 88 ntBASIC1.1□□□□□ -2.23
ShhQ62226 Gm25416-201ENSMUST00000104221 107 ntBASIC1.1□□□□□ -2.23
ShhQ62226 Gm12013-201ENSMUST00000121971 155 ntBASIC1.1□□□□□ -2.23
ShhQ62226 Gm24728-201ENSMUST00000158226 125 ntBASIC1.1□□□□□ -2.23
ShhQ62226 Gm25166-201ENSMUST00000158909 111 ntBASIC1.1□□□□□ -2.23
ShhQ62226 Gm8034-201ENSMUST00000178853 132 ntBASIC1.1□□□□□ -2.23
ShhQ62226 Gm37330-201ENSMUST00000192606 153 ntBASIC1.1□□□□□ -2.23
ShhQ62226 Gm24705-201ENSMUST00000082808 107 ntBASIC1.1□□□□□ -2.23
ShhQ62226 AC127302.3-201ENSMUST00000215480 2791 ntBASIC1.09□□□□□ -2.23
ShhQ62226 Mir20b-201ENSMUST00000102087 80 ntBASIC1.09□□□□□ -2.23
ShhQ62226 Gm23130-201ENSMUST00000104252 74 ntBASIC1.09□□□□□ -2.23
ShhQ62226 Gm23893-201ENSMUST00000158106 134 ntBASIC1.09□□□□□ -2.23
ShhQ62226 Traj61-201ENSMUST00000165025 72 ntBASIC1.09□□□□□ -2.23
ShhQ62226 Gm22801-201ENSMUST00000175624 84 ntBASIC1.09□□□□□ -2.23
ShhQ62226 Gm24926-201ENSMUST00000178053 79 ntBASIC1.09□□□□□ -2.23
ShhQ62226 Gm22632-201ENSMUST00000178266 79 ntBASIC1.09□□□□□ -2.23
ShhQ62226 1700112D23Rik-202ENSMUST00000193387 299 ntTSL 2 BASIC1.09□□□□□ -2.23
ShhQ62226 Olfr880-ps1-201ENSMUST00000212344 229 ntBASIC1.09□□□□□ -2.23
ShhQ62226 1700127F24Rik-202ENSMUST00000223214 259 ntTSL 3 BASIC1.09□□□□□ -2.23
ShhQ62226 Mir324-201ENSMUST00000083600 89 ntBASIC1.09□□□□□ -2.23
ShhQ62226 Gm24030-201ENSMUST00000083931 164 ntBASIC1.09□□□□□ -2.23
ShhQ62226 n-R5s157-201ENSMUST00000122543 121 ntBASIC1.08□□□□□ -2.24
ShhQ62226 Gm24913-201ENSMUST00000157286 107 ntBASIC1.08□□□□□ -2.24
ShhQ62226 Gm22558-201ENSMUST00000157326 95 ntBASIC1.08□□□□□ -2.24
ShhQ62226 Gm22340-201ENSMUST00000157717 114 ntBASIC1.08□□□□□ -2.24
ShhQ62226 Gm26358-201ENSMUST00000158215 97 ntBASIC1.08□□□□□ -2.24
ShhQ62226 AC126939.1-201ENSMUST00000224943 226 ntBASIC1.08□□□□□ -2.24
ShhQ62226 mt-Ts2-201ENSMUST00000082416 59 ntBASIC1.08□□□□□ -2.24
ShhQ62226 Olfr820-203ENSMUST00000215791 3956 ntAPPRIS P1 TSL 5 BASIC1.07□□□□□ -2.24
ShhQ62226 Scarna9-201ENSMUST00000104318 70 ntBASIC1.07□□□□□ -2.24
ShhQ62226 Gm23708-201ENSMUST00000104367 123 ntBASIC1.07□□□□□ -2.24
ShhQ62226 Gm22233-201ENSMUST00000157464 114 ntBASIC1.07□□□□□ -2.24
ShhQ62226 Gm25868-201ENSMUST00000158253 114 ntBASIC1.07□□□□□ -2.24
ShhQ62226 Gm22663-201ENSMUST00000158721 102 ntBASIC1.07□□□□□ -2.24
ShhQ62226 Gm26363-201ENSMUST00000158866 83 ntBASIC1.07□□□□□ -2.24
ShhQ62226 Gm24575-201ENSMUST00000175502 77 ntBASIC1.07□□□□□ -2.24
ShhQ62226 Mir1904-201ENSMUST00000122702 80 ntBASIC1.06□□□□□ -2.24
ShhQ62226 Gm26274-201ENSMUST00000157103 321 ntBASIC1.06□□□□□ -2.24
ShhQ62226 Gm26498-201ENSMUST00000177799 79 ntBASIC1.06□□□□□ -2.24
ShhQ62226 Gm26230-201ENSMUST00000180141 79 ntBASIC1.06□□□□□ -2.24
ShhQ62226 Gm45741-201ENSMUST00000212661 152 ntTSL 1 (best) BASIC1.06□□□□□ -2.24
ShhQ62226 AC133083.2-201ENSMUST00000222826 272 ntTSL 5 BASIC1.06□□□□□ -2.24
ShhQ62226 Gm22515-201ENSMUST00000158273 305 ntBASIC1.05□□□□□ -2.24
ShhQ62226 Gm17172-201ENSMUST00000171782 190 ntTSL 3 BASIC1.05□□□□□ -2.24
ShhQ62226 Gm28398-201ENSMUST00000186587 166 ntTSL 5 BASIC1.05□□□□□ -2.24
ShhQ62226 Gm29653-201ENSMUST00000187192 166 ntTSL 5 BASIC1.05□□□□□ -2.24
ShhQ62226 Gm28810-201ENSMUST00000188173 166 ntTSL 5 BASIC1.05□□□□□ -2.24
ShhQ62226 Gm28575-201ENSMUST00000188234 166 ntTSL 5 BASIC1.05□□□□□ -2.24
ShhQ62226 Gm28132-201ENSMUST00000189901 166 ntTSL 5 BASIC1.05□□□□□ -2.24
ShhQ62226 Gm29580-201ENSMUST00000189921 166 ntTSL 5 BASIC1.05□□□□□ -2.24
ShhQ62226 Gm28858-201ENSMUST00000190517 166 ntTSL 5 BASIC1.05□□□□□ -2.24
ShhQ62226 Gm28210-201ENSMUST00000190631 166 ntTSL 5 BASIC1.05□□□□□ -2.24
ShhQ62226 Gm28336-201ENSMUST00000190743 166 ntTSL 5 BASIC1.05□□□□□ -2.24
ShhQ62226 Gm29042-201ENSMUST00000191564 166 ntTSL 5 BASIC1.05□□□□□ -2.24
ShhQ62226 Gm24311-201ENSMUST00000082570 104 ntBASIC1.05□□□□□ -2.24
ShhQ62226 Mir219a-2-201ENSMUST00000083551 97 ntBASIC1.05□□□□□ -2.24
ShhQ62226 Gm24579-201ENSMUST00000103964 144 ntBASIC1.04□□□□□ -2.24
ShhQ62226 Mir1899-201ENSMUST00000122798 96 ntBASIC1.04□□□□□ -2.24
ShhQ62226 Gm26089-201ENSMUST00000157898 107 ntBASIC1.04□□□□□ -2.24
ShhQ62226 Gm22074-201ENSMUST00000158595 113 ntBASIC1.04□□□□□ -2.24
ShhQ62226 Mir7091-201ENSMUST00000184075 79 ntBASIC1.04□□□□□ -2.24
ShhQ62226 Gm22196-201ENSMUST00000116865 109 ntBASIC1.03□□□□□ -2.24
ShhQ62226 Gm24476-201ENSMUST00000157437 131 ntBASIC1.03□□□□□ -2.24
ShhQ62226 Mir1933-201ENSMUST00000158930 88 ntBASIC1.03□□□□□ -2.24
ShhQ62226 Gm23008-201ENSMUST00000158946 80 ntBASIC1.03□□□□□ -2.24
ShhQ62226 Gm25444-201ENSMUST00000158999 113 ntBASIC1.03□□□□□ -2.24
ShhQ62226 Gm22980-201ENSMUST00000082608 70 ntBASIC1.03□□□□□ -2.24
ShhQ62226 Snord60-201ENSMUST00000082834 78 ntBASIC1.03□□□□□ -2.24
ShhQ62226 Mir27b-201ENSMUST00000083541 73 ntBASIC1.03□□□□□ -2.24
ShhQ62226 Gm25110-201ENSMUST00000116684 121 ntBASIC1.02□□□□□ -2.25
ShhQ62226 Gm25775-201ENSMUST00000116716 121 ntBASIC1.02□□□□□ -2.25
ShhQ62226 Gm24795-201ENSMUST00000116737 121 ntBASIC1.02□□□□□ -2.25
ShhQ62226 Gm25171-201ENSMUST00000116926 121 ntBASIC1.02□□□□□ -2.25
ShhQ62226 n-R5s39-201ENSMUST00000122613 108 ntBASIC1.02□□□□□ -2.25
ShhQ62226 Gm24894-201ENSMUST00000122744 118 ntBASIC1.02□□□□□ -2.25
ShhQ62226 Gm38323-201ENSMUST00000192450 210 ntBASIC1.02□□□□□ -2.25
ShhQ62226 Trbv25-201ENSMUST00000194700 273 ntBASIC1.02□□□□□ -2.25
ShhQ62226 Arhgap5-204ENSMUST00000219443 9323 ntAPPRIS P1 TSL 5 BASIC1.01□□□□□ -2.25
ShhQ62226 Gm23126-201ENSMUST00000104260 134 ntBASIC1.01□□□□□ -2.25
ShhQ62226 Gm23654-201ENSMUST00000116758 126 ntBASIC1.01□□□□□ -2.25
ShhQ62226 Gm24649-201ENSMUST00000157106 134 ntBASIC1.01□□□□□ -2.25
ShhQ62226 Gm25968-201ENSMUST00000157167 100 ntBASIC1.01□□□□□ -2.25
ShhQ62226 Trgj4-201ENSMUST00000184430 61 ntAPPRIS P1 BASIC1.01□□□□□ -2.25
ShhQ62226 Gm42533-201ENSMUST00000196247 157 ntBASIC1.01□□□□□ -2.25
ShhQ62226 AC124687.1-201ENSMUST00000221868 189 ntBASIC1.01□□□□□ -2.25
ShhQ62226 AC160550.1-201ENSMUST00000228659 181 ntBASIC1.01□□□□□ -2.25
ShhQ62226 Gm22772-201ENSMUST00000104451 121 ntBASIC1□□□□□ -2.25
ShhQ62226 Gm25901-201ENSMUST00000158494 130 ntBASIC1□□□□□ -2.25
ShhQ62226 Mir6390-201ENSMUST00000184405 129 ntBASIC1□□□□□ -2.25
ShhQ62226 Mir21c-201ENSMUST00000184910 78 ntBASIC1□□□□□ -2.25
ShhQ62226 Gm37998-201ENSMUST00000195699 166 ntTSL 5 BASIC1□□□□□ -2.25
ShhQ62226 Defb38-201ENSMUST00000066416 286 ntAPPRIS P1 TSL 1 (best) BASIC1□□□□□ -2.25
ShhQ62226 Gm25544-201ENSMUST00000122676 120 ntBASIC0.99□□□□□ -2.25
Retrieved 100 of 76,532 protein–RNA pairs in 95 ms