Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Gm24915-201ENSMUST00000157288 78 ntBASIC1.24□□□□□ -2.21
ShhQ62226 Gm25768-201ENSMUST00000158570 98 ntBASIC1.24□□□□□ -2.21
ShhQ62226 Gm27711-201ENSMUST00000183802 118 ntBASIC1.24□□□□□ -2.21
ShhQ62226 Gm24252-201ENSMUST00000083700 132 ntBASIC1.24□□□□□ -2.21
ShhQ62226 Gm24509-201ENSMUST00000157086 101 ntBASIC1.23□□□□□ -2.21
ShhQ62226 Gm25358-201ENSMUST00000157189 101 ntBASIC1.23□□□□□ -2.21
ShhQ62226 Gm24246-201ENSMUST00000157315 132 ntBASIC1.23□□□□□ -2.21
ShhQ62226 Gm26029-201ENSMUST00000158659 132 ntBASIC1.23□□□□□ -2.21
ShhQ62226 Gm25161-201ENSMUST00000158913 132 ntBASIC1.23□□□□□ -2.21
ShhQ62226 Mir6377-201ENSMUST00000183760 114 ntBASIC1.23□□□□□ -2.21
ShhQ62226 Gm44462-201ENSMUST00000199696 129 ntBASIC1.23□□□□□ -2.21
ShhQ62226 Gm25610-201ENSMUST00000104016 129 ntBASIC1.22□□□□□ -2.21
ShhQ62226 Gm38298-201ENSMUST00000193578 118 ntBASIC1.22□□□□□ -2.21
ShhQ62226 Gm44807-201ENSMUST00000206115 154 ntBASIC1.22□□□□□ -2.21
ShhQ62226 Gm22809-201ENSMUST00000082743 156 ntBASIC1.22□□□□□ -2.21
ShhQ62226 Olfr867-202ENSMUST00000212098 4228 ntTSL 3 BASIC1.21□□□□□ -2.22
ShhQ62226 Gm15289-201ENSMUST00000117793 244 ntBASIC1.21□□□□□ -2.22
ShhQ62226 Gm25623-201ENSMUST00000157216 108 ntBASIC1.21□□□□□ -2.22
ShhQ62226 Gm22559-201ENSMUST00000157329 134 ntBASIC1.21□□□□□ -2.22
ShhQ62226 Gm22381-201ENSMUST00000158186 107 ntBASIC1.21□□□□□ -2.22
ShhQ62226 Gm16399-201ENSMUST00000181423 219 ntBASIC1.21□□□□□ -2.22
ShhQ62226 Mir7657-201ENSMUST00000196051 57 ntBASIC1.21□□□□□ -2.22
ShhQ62226 AC122769.2-201ENSMUST00000227248 302 ntBASIC1.21□□□□□ -2.22
ShhQ62226 Hspe1-ps2-201ENSMUST00000051437 312 ntBASIC1.21□□□□□ -2.22
ShhQ62226 Mir10b-201ENSMUST00000083566 68 ntBASIC1.21□□□□□ -2.22
ShhQ62226 Mir532-201ENSMUST00000093630 96 ntBASIC1.21□□□□□ -2.22
ShhQ62226 Gm23991-201ENSMUST00000117033 93 ntBASIC1.2□□□□□ -2.22
ShhQ62226 Gm22451-201ENSMUST00000122803 151 ntBASIC1.2□□□□□ -2.22
ShhQ62226 Gm23044-201ENSMUST00000157891 100 ntBASIC1.2□□□□□ -2.22
ShhQ62226 Gm25367-201ENSMUST00000158846 106 ntBASIC1.2□□□□□ -2.22
ShhQ62226 Gm22887-201ENSMUST00000178586 107 ntBASIC1.2□□□□□ -2.22
ShhQ62226 Mir468-201ENSMUST00000197332 78 ntBASIC1.2□□□□□ -2.22
ShhQ62226 Snord64-201ENSMUST00000104003 67 ntBASIC1.19□□□□□ -2.22
ShhQ62226 Gm24808-201ENSMUST00000157993 118 ntBASIC1.19□□□□□ -2.22
ShhQ62226 Gm23838-201ENSMUST00000158067 162 ntBASIC1.19□□□□□ -2.22
ShhQ62226 Gm25715-201ENSMUST00000158627 125 ntBASIC1.19□□□□□ -2.22
ShhQ62226 Gm21954-201ENSMUST00000179544 51 ntAPPRIS P1 TSL 5 BASIC1.19□□□□□ -2.22
ShhQ62226 Gm38074-201ENSMUST00000193467 145 ntTSL 5 BASIC1.19□□□□□ -2.22
ShhQ62226 Gm44396-201ENSMUST00000199843 114 ntBASIC1.19□□□□□ -2.22
ShhQ62226 Gm23138-201ENSMUST00000083365 103 ntBASIC1.19□□□□□ -2.22
ShhQ62226 Mir211-201ENSMUST00000083651 106 ntBASIC1.19□□□□□ -2.22
ShhQ62226 AC158598.2-201ENSMUST00000213397 3832 ntBASIC1.19□□□□□ -2.22
ShhQ62226 Vmn1r75-202ENSMUST00000226622 6638 ntAPPRIS P2 BASIC1.19□□□□□ -2.22
ShhQ62226 Olfr1154-203ENSMUST00000215862 2624 ntAPPRIS P1 TSL 5 BASIC1.18□□□□□ -2.22
ShhQ62226 Gm23114-201ENSMUST00000158478 117 ntBASIC1.18□□□□□ -2.22
ShhQ62226 Gm23339-201ENSMUST00000158962 139 ntBASIC1.18□□□□□ -2.22
ShhQ62226 Gm16307-201ENSMUST00000161269 210 ntBASIC1.18□□□□□ -2.22
ShhQ62226 Gm16550-201ENSMUST00000162550 126 ntBASIC1.18□□□□□ -2.22
ShhQ62226 Gm27420-201ENSMUST00000183823 79 ntBASIC1.18□□□□□ -2.22
ShhQ62226 Mir7079-201ENSMUST00000184697 69 ntBASIC1.18□□□□□ -2.22
ShhQ62226 Gm44734-201ENSMUST00000206025 237 ntTSL 5 BASIC1.18□□□□□ -2.22
ShhQ62226 AC147101.2-201ENSMUST00000219756 184 ntBASIC1.18□□□□□ -2.22
ShhQ62226 Gm25091-201ENSMUST00000103997 71 ntBASIC1.17□□□□□ -2.22
ShhQ62226 Gm15654-201ENSMUST00000152660 300 ntBASIC1.17□□□□□ -2.22
ShhQ62226 Gm24401-201ENSMUST00000157868 91 ntBASIC1.17□□□□□ -2.22
ShhQ62226 Gm24942-201ENSMUST00000158328 114 ntBASIC1.17□□□□□ -2.22
ShhQ62226 Gm23763-201ENSMUST00000158345 60 ntBASIC1.17□□□□□ -2.22
ShhQ62226 Mir1961-201ENSMUST00000158643 112 ntBASIC1.17□□□□□ -2.22
ShhQ62226 mt-Tt-201ENSMUST00000082422 67 ntBASIC1.17□□□□□ -2.22
ShhQ62226 Olfr805-203ENSMUST00000216794 3199 ntAPPRIS P1 TSL 5 BASIC1.16□□□□□ -2.22
ShhQ62226 Gm24605-201ENSMUST00000104772 96 ntBASIC1.16□□□□□ -2.22
ShhQ62226 Mir6369-201ENSMUST00000183772 106 ntBASIC1.16□□□□□ -2.22
ShhQ62226 Gm42891-201ENSMUST00000199340 281 ntTSL 5 BASIC1.16□□□□□ -2.22
ShhQ62226 Gm44948-201ENSMUST00000209050 149 ntBASIC1.16□□□□□ -2.22
ShhQ62226 Gm26224-201ENSMUST00000082506 80 ntBASIC1.16□□□□□ -2.22
ShhQ62226 Gm23907-201ENSMUST00000104595 189 ntBASIC1.15□□□□□ -2.23
ShhQ62226 Gm10945-201ENSMUST00000105596 60 ntAPPRIS P1 TSL 5 BASIC1.15□□□□□ -2.23
ShhQ62226 Gm11248-201ENSMUST00000119568 201 ntBASIC1.15□□□□□ -2.23
ShhQ62226 Gm11857-201ENSMUST00000119817 324 ntBASIC1.15□□□□□ -2.23
ShhQ62226 Gm25851-201ENSMUST00000082794 107 ntBASIC1.15□□□□□ -2.23
ShhQ62226 Mir30c-2-201ENSMUST00000083633 84 ntBASIC1.15□□□□□ -2.23
ShhQ62226 Gm25006-201ENSMUST00000083813 107 ntBASIC1.15□□□□□ -2.23
ShhQ62226 Gm24445-201ENSMUST00000083981 107 ntBASIC1.15□□□□□ -2.23
ShhQ62226 Gm24865-201ENSMUST00000103246 96 ntBASIC1.14□□□□□ -2.23
ShhQ62226 Gm14039-201ENSMUST00000118705 101 ntBASIC1.14□□□□□ -2.23
ShhQ62226 Gm25329-201ENSMUST00000158041 126 ntBASIC1.14□□□□□ -2.23
ShhQ62226 Gm24842-201ENSMUST00000158681 54 ntBASIC1.14□□□□□ -2.23
ShhQ62226 Mir7663-201ENSMUST00000183950 61 ntBASIC1.14□□□□□ -2.23
ShhQ62226 Gm24616-201ENSMUST00000083274 139 ntBASIC1.14□□□□□ -2.23
ShhQ62226 Traj45-201ENSMUST00000103697 63 ntAPPRIS P1 BASIC1.13□□□□□ -2.23
ShhQ62226 Traj13-201ENSMUST00000103728 57 ntAPPRIS P1 BASIC1.13□□□□□ -2.23
ShhQ62226 Gm25506-201ENSMUST00000104339 70 ntBASIC1.13□□□□□ -2.23
ShhQ62226 Gm25495-201ENSMUST00000104431 131 ntBASIC1.13□□□□□ -2.23
ShhQ62226 Scgb1b23-ps-201ENSMUST00000116009 252 ntBASIC1.13□□□□□ -2.23
ShhQ62226 n-R5s70-201ENSMUST00000122650 116 ntBASIC1.13□□□□□ -2.23
ShhQ62226 Rab11fip4os2-202ENSMUST00000132921 355 ntTSL 1 (best) BASIC1.13□□□□□ -2.23
ShhQ62226 Gm22708-201ENSMUST00000158987 103 ntBASIC1.13□□□□□ -2.23
ShhQ62226 Mir7063-201ENSMUST00000184158 91 ntBASIC1.13□□□□□ -2.23
ShhQ62226 Mir30f-201ENSMUST00000196073 92 ntBASIC1.13□□□□□ -2.23
ShhQ62226 Gm42935-201ENSMUST00000202004 151 ntBASIC1.13□□□□□ -2.23
ShhQ62226 AC136457.1-201ENSMUST00000224195 156 ntBASIC1.13□□□□□ -2.23
ShhQ62226 CT025630.1-201ENSMUST00000227901 172 ntBASIC1.13□□□□□ -2.23
ShhQ62226 Gm23245-201ENSMUST00000083370 135 ntBASIC1.13□□□□□ -2.23
ShhQ62226 Snhg14-211ENSMUST00000189581 6861 ntTSL 1 (best) BASIC1.12□□□□□ -2.23
ShhQ62226 Gm24916-201ENSMUST00000157287 79 ntBASIC1.12□□□□□ -2.23
ShhQ62226 Gm20118-201ENSMUST00000187207 162 ntBASIC1.12□□□□□ -2.23
ShhQ62226 Gm25128-201ENSMUST00000083339 76 ntBASIC1.12□□□□□ -2.23
ShhQ62226 Gm26168-201ENSMUST00000083787 112 ntBASIC1.12□□□□□ -2.23
ShhQ62226 Olfr832-202ENSMUST00000218385 4435 ntAPPRIS P1 TSL 5 BASIC1.12□□□□□ -2.23
ShhQ62226 Gm24271-201ENSMUST00000102327 111 ntBASIC1.11□□□□□ -2.23
Retrieved 100 of 76,532 protein–RNA pairs in 106.2 ms