Protein–RNA interactions for Protein: Q9CR29

Ccdc43, Coiled-coil domain-containing protein 43, mousemouse

Known RBP Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc43Q9CR29 mt-Nd5-201ENSMUST00000082418 1824 ntAPPRIS P1 BASIC0.12□□□□□ -2.39
Ccdc43Q9CR29 Gm27047-201ENSMUST00000183072 1819 ntBASIC0.11□□□□□ -2.39
Ccdc43Q9CR29 Scarna9-201ENSMUST00000104318 70 ntBASIC0.11□□□□□ -2.39
Ccdc43Q9CR29 Mir1197-201ENSMUST00000117037 120 ntBASIC0.11□□□□□ -2.39
Ccdc43Q9CR29 Gm25223-201ENSMUST00000158200 110 ntBASIC0.11□□□□□ -2.39
Ccdc43Q9CR29 Gm25718-201ENSMUST00000158632 118 ntBASIC0.11□□□□□ -2.39
Ccdc43Q9CR29 Gm25633-201ENSMUST00000178565 107 ntBASIC0.11□□□□□ -2.39
Ccdc43Q9CR29 Gm27943-201ENSMUST00000184844 116 ntBASIC0.11□□□□□ -2.39
Ccdc43Q9CR29 Mir721-201ENSMUST00000200230 88 ntBASIC0.11□□□□□ -2.39
Ccdc43Q9CR29 Gm10226-201ENSMUST00000072133 255 ntAPPRIS P1 BASIC0.11□□□□□ -2.39
Ccdc43Q9CR29 Gm10172-201ENSMUST00000085929 558 ntBASIC0.11□□□□□ -2.39
Ccdc43Q9CR29 Gm28020-201ENSMUST00000157739 67 ntBASIC0.1□□□□□ -2.39
Ccdc43Q9CR29 Gm20005-201ENSMUST00000202583 299 ntTSL 1 (best) BASIC0.1□□□□□ -2.39
Ccdc43Q9CR29 Gm24208-201ENSMUST00000082783 135 ntBASIC0.1□□□□□ -2.39
Ccdc43Q9CR29 Gm14883-201ENSMUST00000120179 157 ntBASIC0.09□□□□□ -2.4
Ccdc43Q9CR29 n-R5s87-201ENSMUST00000122752 116 ntBASIC0.09□□□□□ -2.4
Ccdc43Q9CR29 Gm22431-201ENSMUST00000158545 107 ntBASIC0.09□□□□□ -2.4
Ccdc43Q9CR29 Gm42795-201ENSMUST00000198847 76 ntBASIC0.09□□□□□ -2.4
Ccdc43Q9CR29 Gm25588-201ENSMUST00000082501 140 ntBASIC0.09□□□□□ -2.4
Ccdc43Q9CR29 Gm24762-201ENSMUST00000083689 104 ntBASIC0.09□□□□□ -2.4
Ccdc43Q9CR29 Mir670-201ENSMUST00000102380 100 ntBASIC0.08□□□□□ -2.4
Ccdc43Q9CR29 Mir1899-201ENSMUST00000122798 96 ntBASIC0.08□□□□□ -2.4
Ccdc43Q9CR29 Gm23761-201ENSMUST00000158347 104 ntBASIC0.08□□□□□ -2.4
Ccdc43Q9CR29 Gm44989-201ENSMUST00000204749 217 ntBASIC0.08□□□□□ -2.4
Ccdc43Q9CR29 AC211878.4-201ENSMUST00000220970 262 ntBASIC0.08□□□□□ -2.4
Ccdc43Q9CR29 Gm24460-201ENSMUST00000082731 106 ntBASIC0.08□□□□□ -2.4
Ccdc43Q9CR29 Snord60-201ENSMUST00000082834 78 ntBASIC0.08□□□□□ -2.4
Ccdc43Q9CR29 Mir186-201ENSMUST00000083497 71 ntBASIC0.08□□□□□ -2.4
Ccdc43Q9CR29 Mir377-201ENSMUST00000083504 68 ntBASIC0.08□□□□□ -2.4
Ccdc43Q9CR29 Mirlet7g-201ENSMUST00000083506 88 ntBASIC0.08□□□□□ -2.4
Ccdc43Q9CR29 Mir411-201ENSMUST00000083543 82 ntBASIC0.08□□□□□ -2.4
Ccdc43Q9CR29 Gm24278-201ENSMUST00000104239 127 ntBASIC0.07□□□□□ -2.4
Ccdc43Q9CR29 Gm26420-201ENSMUST00000104273 103 ntBASIC0.07□□□□□ -2.4
Ccdc43Q9CR29 Gm23821-201ENSMUST00000158738 106 ntBASIC0.07□□□□□ -2.4
Ccdc43Q9CR29 Mir6369-201ENSMUST00000183772 106 ntBASIC0.07□□□□□ -2.4
Ccdc43Q9CR29 Gm27402-201ENSMUST00000183890 120 ntBASIC0.07□□□□□ -2.4
Ccdc43Q9CR29 Gm45859-201ENSMUST00000212794 214 ntBASIC0.07□□□□□ -2.4
Ccdc43Q9CR29 AC165157.3-201ENSMUST00000220815 103 ntBASIC0.07□□□□□ -2.4
Ccdc43Q9CR29 1700127F24Rik-202ENSMUST00000223214 259 ntTSL 3 BASIC0.07□□□□□ -2.4
Ccdc43Q9CR29 CT030645.1-201ENSMUST00000224020 231 ntBASIC0.07□□□□□ -2.4
Ccdc43Q9CR29 Gm8508-201ENSMUST00000061226 363 ntBASIC0.07□□□□□ -2.4
Ccdc43Q9CR29 mt-Ti-201ENSMUST00000082393 69 ntBASIC0.07□□□□□ -2.4
Ccdc43Q9CR29 Gm22738-201ENSMUST00000083440 147 ntBASIC0.07□□□□□ -2.4
Ccdc43Q9CR29 Gm25894-201ENSMUST00000083458 75 ntBASIC0.07□□□□□ -2.4
Ccdc43Q9CR29 Mir7079-201ENSMUST00000184697 69 ntBASIC0.06□□□□□ -2.4
Ccdc43Q9CR29 AC192091.2-201ENSMUST00000217869 117 ntBASIC0.06□□□□□ -2.4
Ccdc43Q9CR29 Gm9805-201ENSMUST00000055305 171 ntAPPRIS P1 BASIC0.06□□□□□ -2.4
Ccdc43Q9CR29 Mir541-201ENSMUST00000102097 90 ntBASIC0.05□□□□□ -2.4
Ccdc43Q9CR29 Tcrg-V4-201ENSMUST00000103554 426 ntAPPRIS P1 BASIC0.05□□□□□ -2.4
Ccdc43Q9CR29 Gm23841-201ENSMUST00000116951 114 ntBASIC0.05□□□□□ -2.4
Ccdc43Q9CR29 Gm15654-201ENSMUST00000152660 300 ntBASIC0.05□□□□□ -2.4
Ccdc43Q9CR29 Gm26158-201ENSMUST00000158973 119 ntBASIC0.05□□□□□ -2.4
Ccdc43Q9CR29 Gm23917-201ENSMUST00000175256 98 ntBASIC0.05□□□□□ -2.4
Ccdc43Q9CR29 Gm24575-201ENSMUST00000175502 77 ntBASIC0.05□□□□□ -2.4
Ccdc43Q9CR29 Mir8107-201ENSMUST00000184024 117 ntBASIC0.05□□□□□ -2.4
Ccdc43Q9CR29 4921527H02Rik-201ENSMUST00000196028 246 ntBASIC0.05□□□□□ -2.4
Ccdc43Q9CR29 Mir30f-201ENSMUST00000196073 92 ntBASIC0.05□□□□□ -2.4
Ccdc43Q9CR29 AC134601.1-201ENSMUST00000221058 109 ntBASIC0.05□□□□□ -2.4
Ccdc43Q9CR29 Snord95-201ENSMUST00000082846 68 ntBASIC0.05□□□□□ -2.4
Ccdc43Q9CR29 Mir196a-2-201ENSMUST00000083554 85 ntBASIC0.05□□□□□ -2.4
Ccdc43Q9CR29 Gm24555-201ENSMUST00000104548 124 ntBASIC0.04□□□□□ -2.4
Ccdc43Q9CR29 B230307C23Rik-201ENSMUST00000113729 192 ntTSL 5 BASIC0.04□□□□□ -2.4
Ccdc43Q9CR29 Gm23881-201ENSMUST00000116872 66 ntBASIC0.04□□□□□ -2.4
Ccdc43Q9CR29 Gm6897-201ENSMUST00000117714 138 ntBASIC0.04□□□□□ -2.4
Ccdc43Q9CR29 Gm14758-201ENSMUST00000119104 138 ntBASIC0.04□□□□□ -2.4
Ccdc43Q9CR29 Polr2k-ps-201ENSMUST00000120170 175 ntBASIC0.04□□□□□ -2.4
Ccdc43Q9CR29 Gm23783-201ENSMUST00000157941 102 ntBASIC0.04□□□□□ -2.4
Ccdc43Q9CR29 Gm10548-202ENSMUST00000165672 272 ntBASIC0.04□□□□□ -2.4
Ccdc43Q9CR29 Gm28001-201ENSMUST00000183561 117 ntBASIC0.04□□□□□ -2.4
Ccdc43Q9CR29 Gm25496-201ENSMUST00000104430 120 ntBASIC0.03□□□□□ -2.4
Ccdc43Q9CR29 Gm22790-201ENSMUST00000157229 129 ntBASIC0.03□□□□□ -2.4
Ccdc43Q9CR29 Gm25015-201ENSMUST00000158400 128 ntBASIC0.03□□□□□ -2.4
Ccdc43Q9CR29 Gm24321-201ENSMUST00000175348 80 ntBASIC0.03□□□□□ -2.4
Ccdc43Q9CR29 Mir3105-201ENSMUST00000175480 85 ntBASIC0.03□□□□□ -2.4
Ccdc43Q9CR29 AC150901.1-201ENSMUST00000208407 145 ntBASIC0.03□□□□□ -2.4
Ccdc43Q9CR29 Snord19-201ENSMUST00000104609 76 ntBASIC0.02□□□□□ -2.41
Ccdc43Q9CR29 Gm26279-201ENSMUST00000157095 102 ntBASIC0.02□□□□□ -2.41
Ccdc43Q9CR29 Gm24772-201ENSMUST00000158507 110 ntBASIC0.02□□□□□ -2.41
Ccdc43Q9CR29 Mir6342-201ENSMUST00000183870 125 ntBASIC0.02□□□□□ -2.41
Ccdc43Q9CR29 Gm44469-201ENSMUST00000198558 79 ntBASIC0.02□□□□□ -2.41
Ccdc43Q9CR29 AC136457.1-201ENSMUST00000224195 156 ntBASIC0.02□□□□□ -2.41
Ccdc43Q9CR29 Sva-201ENSMUST00000024059 651 ntAPPRIS P2 TSL 1 (best) BASIC0.02□□□□□ -2.41
Ccdc43Q9CR29 Traj21-201ENSMUST00000103720 57 ntAPPRIS P1 BASIC0.01□□□□□ -2.41
Ccdc43Q9CR29 Gm10959-201ENSMUST00000106431 72 ntAPPRIS P1 TSL 5 BASIC0.01□□□□□ -2.41
Ccdc43Q9CR29 Gm45489-201ENSMUST00000211753 443 ntTSL 3 BASIC0.01□□□□□ -2.41
Ccdc43Q9CR29 AC159093.2-201ENSMUST00000227881 297 ntBASIC0.01□□□□□ -2.41
Ccdc43Q9CR29 Gm24121-201ENSMUST00000102029 106 ntBASIC0□□□□□ -2.41
Ccdc43Q9CR29 Gm22850-201ENSMUST00000157714 82 ntBASIC0□□□□□ -2.41
Ccdc43Q9CR29 Gm22557-201ENSMUST00000157804 102 ntBASIC0□□□□□ -2.41
Ccdc43Q9CR29 Gm44807-201ENSMUST00000206115 154 ntBASIC0□□□□□ -2.41
Ccdc43Q9CR29 Gm23060-201ENSMUST00000102345 109 ntBASIC-0.01□□□□□ -2.41
Ccdc43Q9CR29 Gm25610-201ENSMUST00000104016 129 ntBASIC-0.01□□□□□ -2.41
Ccdc43Q9CR29 Gm25408-201ENSMUST00000104104 133 ntBASIC-0.01□□□□□ -2.41
Ccdc43Q9CR29 Gm22332-201ENSMUST00000158072 126 ntBASIC-0.01□□□□□ -2.41
Ccdc43Q9CR29 Gm27980-201ENSMUST00000184094 169 ntBASIC-0.01□□□□□ -2.41
Ccdc43Q9CR29 Ighv12-2-201ENSMUST00000191949 362 ntBASIC-0.01□□□□□ -2.41
Ccdc43Q9CR29 Mir6896-201ENSMUST00000198033 73 ntBASIC-0.01□□□□□ -2.41
Ccdc43Q9CR29 Gm10139-201ENSMUST00000081471 171 ntAPPRIS P1 BASIC-0.01□□□□□ -2.41
Ccdc43Q9CR29 Mir489-201ENSMUST00000093599 107 ntBASIC-0.01□□□□□ -2.41
Ccdc43Q9CR29 Gm23857-201ENSMUST00000158379 111 ntBASIC-0.02□□□□□ -2.41
Retrieved 100 of 76,532 protein–RNA pairs in 177 ms