Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Gm24262-201ENSMUST00000157431 144 ntBASIC1.38□□□□□ -2.19
ShhQ62226 Gm24288-201ENSMUST00000157630 144 ntBASIC1.38□□□□□ -2.19
ShhQ62226 Gm22332-201ENSMUST00000158072 126 ntBASIC1.38□□□□□ -2.19
ShhQ62226 Gm24677-201ENSMUST00000158755 150 ntBASIC1.38□□□□□ -2.19
ShhQ62226 Snora24-201ENSMUST00000174989 130 ntBASIC1.38□□□□□ -2.19
ShhQ62226 Gm22775-201ENSMUST00000177630 120 ntBASIC1.38□□□□□ -2.19
ShhQ62226 Gm23569-201ENSMUST00000180120 120 ntBASIC1.38□□□□□ -2.19
ShhQ62226 Gm26741-201ENSMUST00000180473 87 ntAPPRIS P1 BASIC1.38□□□□□ -2.19
ShhQ62226 n-R5s96-201ENSMUST00000082574 124 ntBASIC1.38□□□□□ -2.19
ShhQ62226 Gm22681-201ENSMUST00000083853 106 ntBASIC1.38□□□□□ -2.19
ShhQ62226 AC164629.4-201ENSMUST00000218505 3247 ntBASIC1.37□□□□□ -2.19
ShhQ62226 Gm14568-201ENSMUST00000119321 294 ntBASIC1.37□□□□□ -2.19
ShhQ62226 Gm23106-201ENSMUST00000157554 101 ntBASIC1.37□□□□□ -2.19
ShhQ62226 Gm22966-201ENSMUST00000157957 129 ntBASIC1.37□□□□□ -2.19
ShhQ62226 Gm23260-201ENSMUST00000158317 172 ntBASIC1.37□□□□□ -2.19
ShhQ62226 Gm25241-201ENSMUST00000174909 84 ntBASIC1.37□□□□□ -2.19
ShhQ62226 Gm26217-201ENSMUST00000175212 84 ntBASIC1.37□□□□□ -2.19
ShhQ62226 Mir411-201ENSMUST00000083543 82 ntBASIC1.37□□□□□ -2.19
ShhQ62226 Gm24449-201ENSMUST00000083985 106 ntBASIC1.37□□□□□ -2.19
ShhQ62226 Gm23375-201ENSMUST00000175407 83 ntBASIC1.36□□□□□ -2.19
ShhQ62226 Gm27493-201ENSMUST00000184128 78 ntBASIC1.36□□□□□ -2.19
ShhQ62226 Gm28256-201ENSMUST00000188953 139 ntBASIC1.36□□□□□ -2.19
ShhQ62226 Gm28559-201ENSMUST00000190532 139 ntBASIC1.36□□□□□ -2.19
ShhQ62226 Gm24494-201ENSMUST00000083804 81 ntBASIC1.36□□□□□ -2.19
ShhQ62226 Vmn1r75-204ENSMUST00000227611 4336 ntAPPRIS ALT2 BASIC1.35□□□□□ -2.19
ShhQ62226 Gm25611-201ENSMUST00000104017 133 ntBASIC1.35□□□□□ -2.19
ShhQ62226 Gm22469-201ENSMUST00000104118 133 ntBASIC1.35□□□□□ -2.19
ShhQ62226 Gm26011-201ENSMUST00000104410 104 ntBASIC1.35□□□□□ -2.19
ShhQ62226 Gm14946-201ENSMUST00000119859 296 ntBASIC1.35□□□□□ -2.19
ShhQ62226 Gm24895-201ENSMUST00000122742 74 ntBASIC1.35□□□□□ -2.19
ShhQ62226 Gm16225-201ENSMUST00000146152 276 ntTSL 5 BASIC1.35□□□□□ -2.19
ShhQ62226 Gm26038-201ENSMUST00000158151 106 ntBASIC1.35□□□□□ -2.19
ShhQ62226 Gm24167-201ENSMUST00000177733 124 ntBASIC1.35□□□□□ -2.19
ShhQ62226 Gm24028-201ENSMUST00000178991 124 ntBASIC1.35□□□□□ -2.19
ShhQ62226 Mir669j-201ENSMUST00000179023 121 ntBASIC1.35□□□□□ -2.19
ShhQ62226 AC124739.2-201ENSMUST00000222201 109 ntBASIC1.35□□□□□ -2.19
ShhQ62226 Gm26454-201ENSMUST00000082682 107 ntBASIC1.35□□□□□ -2.19
ShhQ62226 Gm23509-201ENSMUST00000083080 160 ntBASIC1.35□□□□□ -2.19
ShhQ62226 Gm23966-201ENSMUST00000179823 107 ntBASIC1.34□□□□□ -2.19
ShhQ62226 Gm28862-201ENSMUST00000188246 163 ntBASIC1.34□□□□□ -2.19
ShhQ62226 Gm43898-201ENSMUST00000204456 424 ntBASIC1.34□□□□□ -2.19
ShhQ62226 CT485607.2-201ENSMUST00000214650 91 ntBASIC1.34□□□□□ -2.19
ShhQ62226 AC141438.3-201ENSMUST00000215632 202 ntBASIC1.34□□□□□ -2.19
ShhQ62226 CT025689.3-201ENSMUST00000223817 301 ntBASIC1.34□□□□□ -2.19
ShhQ62226 Gm27446-201ENSMUST00000183963 89 ntBASIC1.33□□□□□ -2.2
ShhQ62226 A730009L09Rik-202ENSMUST00000210306 201 ntAPPRIS ALT2 TSL 5 BASIC1.33□□□□□ -2.2
ShhQ62226 Mir653-201ENSMUST00000102402 85 ntBASIC1.32□□□□□ -2.2
ShhQ62226 Gm14626-201ENSMUST00000117619 216 ntBASIC1.32□□□□□ -2.2
ShhQ62226 Gm26091-201ENSMUST00000122704 82 ntBASIC1.32□□□□□ -2.2
ShhQ62226 Gm24238-201ENSMUST00000157792 98 ntBASIC1.32□□□□□ -2.2
ShhQ62226 Gm25011-201ENSMUST00000158398 126 ntBASIC1.32□□□□□ -2.2
ShhQ62226 Gm20409-201ENSMUST00000173457 130 ntBASIC1.32□□□□□ -2.2
ShhQ62226 Gm25936-201ENSMUST00000179952 114 ntBASIC1.32□□□□□ -2.2
ShhQ62226 Gm44962-201ENSMUST00000206460 279 ntBASIC1.32□□□□□ -2.2
ShhQ62226 Gm22780-201ENSMUST00000104084 132 ntBASIC1.31□□□□□ -2.2
ShhQ62226 Gm22384-201ENSMUST00000158187 104 ntBASIC1.31□□□□□ -2.2
ShhQ62226 Gm22425-201ENSMUST00000158532 138 ntBASIC1.31□□□□□ -2.2
ShhQ62226 Gm27365-201ENSMUST00000184041 177 ntBASIC1.31□□□□□ -2.2
ShhQ62226 Gm26123-201ENSMUST00000083363 135 ntBASIC1.31□□□□□ -2.2
ShhQ62226 Traj21-201ENSMUST00000103720 57 ntAPPRIS P1 BASIC1.3□□□□□ -2.2
ShhQ62226 Gm22785-201ENSMUST00000104087 132 ntBASIC1.3□□□□□ -2.2
ShhQ62226 Gm25787-201ENSMUST00000104709 92 ntBASIC1.3□□□□□ -2.2
ShhQ62226 Gm24588-201ENSMUST00000116696 83 ntBASIC1.3□□□□□ -2.2
ShhQ62226 n-R5s63-201ENSMUST00000122756 103 ntBASIC1.3□□□□□ -2.2
ShhQ62226 Gm23253-201ENSMUST00000157441 104 ntBASIC1.3□□□□□ -2.2
ShhQ62226 Gm25663-201ENSMUST00000157698 135 ntBASIC1.3□□□□□ -2.2
ShhQ62226 Gm23083-201ENSMUST00000157851 116 ntBASIC1.3□□□□□ -2.2
ShhQ62226 Gm26084-201ENSMUST00000157903 104 ntBASIC1.3□□□□□ -2.2
ShhQ62226 Gm22802-201ENSMUST00000175621 89 ntBASIC1.3□□□□□ -2.2
ShhQ62226 Gm44385-201ENSMUST00000198781 81 ntBASIC1.3□□□□□ -2.2
ShhQ62226 CT009696.1-201ENSMUST00000215745 256 ntBASIC1.3□□□□□ -2.2
ShhQ62226 Gm16976-205ENSMUST00000227324 226 ntBASIC1.3□□□□□ -2.2
ShhQ62226 Snord96a-201ENSMUST00000082791 81 ntBASIC1.3□□□□□ -2.2
ShhQ62226 Gm23636-201ENSMUST00000175070 95 ntBASIC1.29□□□□□ -2.2
ShhQ62226 Gm22914-201ENSMUST00000175195 77 ntBASIC1.29□□□□□ -2.2
ShhQ62226 Gm44483-201ENSMUST00000197203 97 ntBASIC1.29□□□□□ -2.2
ShhQ62226 Mir196b-201ENSMUST00000083509 85 ntBASIC1.29□□□□□ -2.2
ShhQ62226 Gm25650-201ENSMUST00000083784 162 ntBASIC1.29□□□□□ -2.2
ShhQ62226 Olfr8-203ENSMUST00000214952 3407 ntAPPRIS P1 TSL 5 BASIC1.28□□□□□ -2.2
ShhQ62226 Gm24718-201ENSMUST00000157521 136 ntBASIC1.28□□□□□ -2.2
ShhQ62226 Snord13-201ENSMUST00000157627 104 ntBASIC1.28□□□□□ -2.2
ShhQ62226 Gm25920-201ENSMUST00000158307 99 ntBASIC1.28□□□□□ -2.2
ShhQ62226 Mir3094-201ENSMUST00000175121 64 ntBASIC1.28□□□□□ -2.2
ShhQ62226 Mir344d-3-201ENSMUST00000175458 80 ntBASIC1.28□□□□□ -2.2
ShhQ62226 Gm42795-201ENSMUST00000198847 76 ntBASIC1.28□□□□□ -2.2
ShhQ62226 Zfp40-203ENSMUST00000140313 2754 ntTSL 1 (best) BASIC1.27□□□□□ -2.21
ShhQ62226 Gm22963-201ENSMUST00000157960 91 ntBASIC1.27□□□□□ -2.21
ShhQ62226 Gm22862-201ENSMUST00000178593 121 ntBASIC1.27□□□□□ -2.21
ShhQ62226 AC147560.1-201ENSMUST00000197528 107 ntBASIC1.27□□□□□ -2.21
ShhQ62226 Mirlet7f-2-201ENSMUST00000083668 83 ntBASIC1.27□□□□□ -2.21
ShhQ62226 AC153950.1-201ENSMUST00000219916 3238 ntBASIC1.27□□□□□ -2.21
ShhQ62226 Mir547-201ENSMUST00000102051 78 ntBASIC1.26□□□□□ -2.21
ShhQ62226 Gm16186-201ENSMUST00000120132 216 ntBASIC1.26□□□□□ -2.21
ShhQ62226 Gm22815-201ENSMUST00000157451 62 ntBASIC1.26□□□□□ -2.21
ShhQ62226 Traj60-201ENSMUST00000167781 54 ntBASIC1.26□□□□□ -2.21
ShhQ62226 Gm36929-201ENSMUST00000195152 166 ntTSL 5 BASIC1.26□□□□□ -2.21
ShhQ62226 Gm25759-201ENSMUST00000103988 129 ntBASIC1.25□□□□□ -2.21
ShhQ62226 Gm23221-201ENSMUST00000158118 93 ntBASIC1.25□□□□□ -2.21
ShhQ62226 Gm25812-201ENSMUST00000082751 103 ntBASIC1.25□□□□□ -2.21
ShhQ62226 Traj43-201ENSMUST00000103699 57 ntAPPRIS P1 BASIC1.24□□□□□ -2.21
Retrieved 100 of 76,532 protein–RNA pairs in 84 ms