Protein–RNA interactions for Protein: Q9CR29

Ccdc43, Coiled-coil domain-containing protein 43, mousemouse

Known RBP Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc43Q9CR29 Gm25188-201ENSMUST00000083913 122 ntBASIC0.29□□□□□ -2.36
Ccdc43Q9CR29 Gm10719-202ENSMUST00000099049 675 ntAPPRIS ALT2 TSL 5 BASIC0.29□□□□□ -2.36
Ccdc43Q9CR29 Gm16546-201ENSMUST00000159442 355 ntBASIC0.28□□□□□ -2.36
Ccdc43Q9CR29 AL627387.1-201ENSMUST00000226063 250 ntBASIC0.28□□□□□ -2.36
Ccdc43Q9CR29 Gm23126-201ENSMUST00000104260 134 ntBASIC0.27□□□□□ -2.37
Ccdc43Q9CR29 Gm14400-201ENSMUST00000117234 2135 ntBASIC0.27□□□□□ -2.37
Ccdc43Q9CR29 Gm25267-201ENSMUST00000158522 63 ntBASIC0.27□□□□□ -2.37
Ccdc43Q9CR29 Gm3702-201ENSMUST00000211754 346 ntBASIC0.27□□□□□ -2.37
Ccdc43Q9CR29 Gm19790-201ENSMUST00000214414 251 ntBASIC0.27□□□□□ -2.37
Ccdc43Q9CR29 AC156794.1-201ENSMUST00000214415 214 ntTSL 5 BASIC0.27□□□□□ -2.37
Ccdc43Q9CR29 AC116319.1-201ENSMUST00000227765 222 ntBASIC0.27□□□□□ -2.37
Ccdc43Q9CR29 Gm22753-201ENSMUST00000083657 107 ntBASIC0.27□□□□□ -2.37
Ccdc43Q9CR29 Mir669i-201ENSMUST00000117007 127 ntBASIC0.26□□□□□ -2.37
Ccdc43Q9CR29 Gm6952-201ENSMUST00000118629 159 ntBASIC0.26□□□□□ -2.37
Ccdc43Q9CR29 Gm25444-201ENSMUST00000158999 113 ntBASIC0.26□□□□□ -2.37
Ccdc43Q9CR29 Gm22239-201ENSMUST00000175220 103 ntBASIC0.26□□□□□ -2.37
Ccdc43Q9CR29 Mir218-1-201ENSMUST00000083669 110 ntBASIC0.26□□□□□ -2.37
Ccdc43Q9CR29 Mir466f-2-201ENSMUST00000104805 94 ntBASIC0.25□□□□□ -2.37
Ccdc43Q9CR29 Gm14567-201ENSMUST00000117155 174 ntBASIC0.25□□□□□ -2.37
Ccdc43Q9CR29 Mir7039-201ENSMUST00000183852 85 ntBASIC0.25□□□□□ -2.37
Ccdc43Q9CR29 Mir8116-201ENSMUST00000184134 97 ntBASIC0.25□□□□□ -2.37
Ccdc43Q9CR29 Gm24867-201ENSMUST00000104161 107 ntBASIC0.24□□□□□ -2.37
Ccdc43Q9CR29 Snord100-201ENSMUST00000116836 74 ntBASIC0.24□□□□□ -2.37
Ccdc43Q9CR29 Gm13339-201ENSMUST00000120651 510 ntBASIC0.24□□□□□ -2.37
Ccdc43Q9CR29 Gm27717-201ENSMUST00000183933 151 ntBASIC0.24□□□□□ -2.37
Ccdc43Q9CR29 Gm6003-201ENSMUST00000187903 463 ntBASIC0.24□□□□□ -2.37
Ccdc43Q9CR29 Mir200a-201ENSMUST00000083466 90 ntBASIC0.24□□□□□ -2.37
Ccdc43Q9CR29 Gm27585-201ENSMUST00000183717 199 ntBASIC0.23□□□□□ -2.37
Ccdc43Q9CR29 Mir6365-201ENSMUST00000183990 101 ntBASIC0.23□□□□□ -2.37
Ccdc43Q9CR29 Gm38364-201ENSMUST00000191814 179 ntBASIC0.23□□□□□ -2.37
Ccdc43Q9CR29 AC153512.4-201ENSMUST00000217783 426 ntTSL 3 BASIC0.23□□□□□ -2.37
Ccdc43Q9CR29 Mir710-201ENSMUST00000102088 110 ntBASIC0.22□□□□□ -2.37
Ccdc43Q9CR29 Gm24833-201ENSMUST00000116775 120 ntBASIC0.22□□□□□ -2.37
Ccdc43Q9CR29 Gm44457-201ENSMUST00000198109 76 ntBASIC0.22□□□□□ -2.37
Ccdc43Q9CR29 1700014F14Rik-201ENSMUST00000199566 197 ntTSL 1 (best) BASIC0.22□□□□□ -2.37
Ccdc43Q9CR29 Olfr1099-202ENSMUST00000213456 4867 ntAPPRIS P1 TSL 5 BASIC0.21□□□□□ -2.38
Ccdc43Q9CR29 Gm26026-201ENSMUST00000122726 123 ntBASIC0.21□□□□□ -2.38
Ccdc43Q9CR29 Scarna8-201ENSMUST00000158333 131 ntBASIC0.21□□□□□ -2.38
Ccdc43Q9CR29 Mir100-201ENSMUST00000175270 80 ntBASIC0.21□□□□□ -2.38
Ccdc43Q9CR29 Gm25464-201ENSMUST00000175481 107 ntBASIC0.21□□□□□ -2.38
Ccdc43Q9CR29 Gm28767-201ENSMUST00000188601 114 ntBASIC0.21□□□□□ -2.38
Ccdc43Q9CR29 AC116460.1-201ENSMUST00000219040 313 ntBASIC0.21□□□□□ -2.38
Ccdc43Q9CR29 Mir384-201ENSMUST00000083565 88 ntBASIC0.21□□□□□ -2.38
Ccdc43Q9CR29 Mir146-201ENSMUST00000083667 65 ntBASIC0.21□□□□□ -2.38
Ccdc43Q9CR29 Mir3108-201ENSMUST00000175500 79 ntBASIC0.2□□□□□ -2.38
Ccdc43Q9CR29 Gm38019-201ENSMUST00000195133 380 ntBASIC0.2□□□□□ -2.38
Ccdc43Q9CR29 Gm14039-201ENSMUST00000118705 101 ntBASIC0.19□□□□□ -2.38
Ccdc43Q9CR29 Gm26160-201ENSMUST00000158965 63 ntBASIC0.19□□□□□ -2.38
Ccdc43Q9CR29 Vmn2r-ps78-201ENSMUST00000173350 308 ntBASIC0.19□□□□□ -2.38
Ccdc43Q9CR29 Mir669a-7-201ENSMUST00000180364 87 ntBASIC0.19□□□□□ -2.38
Ccdc43Q9CR29 Mir669a-6-201ENSMUST00000196127 87 ntBASIC0.19□□□□□ -2.38
Ccdc43Q9CR29 Mir669a-12-201ENSMUST00000197274 87 ntBASIC0.19□□□□□ -2.38
Ccdc43Q9CR29 Mir669a-5-201ENSMUST00000197439 87 ntBASIC0.19□□□□□ -2.38
Ccdc43Q9CR29 Mir669a-10-201ENSMUST00000197745 87 ntBASIC0.19□□□□□ -2.38
Ccdc43Q9CR29 Mir669a-11-201ENSMUST00000197952 87 ntBASIC0.19□□□□□ -2.38
Ccdc43Q9CR29 Mir669a-4-201ENSMUST00000198665 87 ntBASIC0.19□□□□□ -2.38
Ccdc43Q9CR29 Mir3970-201ENSMUST00000199287 90 ntBASIC0.19□□□□□ -2.38
Ccdc43Q9CR29 Mir669a-9-201ENSMUST00000200087 87 ntBASIC0.19□□□□□ -2.38
Ccdc43Q9CR29 Mir669a-8-201ENSMUST00000200268 87 ntBASIC0.19□□□□□ -2.38
Ccdc43Q9CR29 Gm23301-201ENSMUST00000082713 65 ntBASIC0.19□□□□□ -2.38
Ccdc43Q9CR29 Gm16186-201ENSMUST00000120132 216 ntBASIC0.18□□□□□ -2.38
Ccdc43Q9CR29 n-R5s18-201ENSMUST00000122740 121 ntBASIC0.18□□□□□ -2.38
Ccdc43Q9CR29 Gm22520-201ENSMUST00000158269 129 ntBASIC0.18□□□□□ -2.38
Ccdc43Q9CR29 Gm27993-201ENSMUST00000184362 85 ntBASIC0.18□□□□□ -2.38
Ccdc43Q9CR29 Gm37330-201ENSMUST00000192606 153 ntBASIC0.18□□□□□ -2.38
Ccdc43Q9CR29 AC158981.3-202ENSMUST00000228906 523 ntBASIC0.18□□□□□ -2.38
Ccdc43Q9CR29 Mir224-201ENSMUST00000083608 82 ntBASIC0.18□□□□□ -2.38
Ccdc43Q9CR29 Vmn1r-ps120-201ENSMUST00000120288 377 ntBASIC0.17□□□□□ -2.38
Ccdc43Q9CR29 Mir7229-201ENSMUST00000197062 53 ntBASIC0.17□□□□□ -2.38
Ccdc43Q9CR29 Gm25720-201ENSMUST00000157503 105 ntBASIC0.16□□□□□ -2.38
Ccdc43Q9CR29 Gm25362-201ENSMUST00000158854 105 ntBASIC0.16□□□□□ -2.38
Ccdc43Q9CR29 Mir7077-201ENSMUST00000183991 57 ntBASIC0.16□□□□□ -2.38
Ccdc43Q9CR29 Gm23679-201ENSMUST00000083161 119 ntBASIC0.16□□□□□ -2.38
Ccdc43Q9CR29 Mir669d-2-201ENSMUST00000116854 86 ntBASIC0.15□□□□□ -2.39
Ccdc43Q9CR29 Gm12815-201ENSMUST00000121737 135 ntBASIC0.15□□□□□ -2.39
Ccdc43Q9CR29 Gm24724-201ENSMUST00000158230 107 ntBASIC0.15□□□□□ -2.39
Ccdc43Q9CR29 Gm24488-201ENSMUST00000179934 127 ntBASIC0.15□□□□□ -2.39
Ccdc43Q9CR29 Gm25701-201ENSMUST00000179988 127 ntBASIC0.15□□□□□ -2.39
Ccdc43Q9CR29 Gm26431-201ENSMUST00000180199 127 ntBASIC0.15□□□□□ -2.39
Ccdc43Q9CR29 Mir219b-201ENSMUST00000198317 65 ntBASIC0.15□□□□□ -2.39
Ccdc43Q9CR29 Gm25364-201ENSMUST00000158851 107 ntBASIC0.14□□□□□ -2.39
Ccdc43Q9CR29 Gm16550-201ENSMUST00000162550 126 ntBASIC0.14□□□□□ -2.39
Ccdc43Q9CR29 Gm25952-201ENSMUST00000175329 74 ntBASIC0.14□□□□□ -2.39
Ccdc43Q9CR29 Mir881-201ENSMUST00000104844 78 ntBASIC0.13□□□□□ -2.39
Ccdc43Q9CR29 Gm25769-201ENSMUST00000158569 127 ntBASIC0.13□□□□□ -2.39
Ccdc43Q9CR29 Gm23567-201ENSMUST00000178005 107 ntBASIC0.13□□□□□ -2.39
Ccdc43Q9CR29 Gm44455-201ENSMUST00000200061 82 ntBASIC0.13□□□□□ -2.39
Ccdc43Q9CR29 Gm12686-201ENSMUST00000120546 397 ntBASIC0.12□□□□□ -2.39
Ccdc43Q9CR29 Gm24250-201ENSMUST00000157320 135 ntBASIC0.12□□□□□ -2.39
Ccdc43Q9CR29 Gm23770-201ENSMUST00000178009 108 ntBASIC0.12□□□□□ -2.39
Ccdc43Q9CR29 Gm22832-201ENSMUST00000178022 108 ntBASIC0.12□□□□□ -2.39
Ccdc43Q9CR29 Gm23863-201ENSMUST00000178265 108 ntBASIC0.12□□□□□ -2.39
Ccdc43Q9CR29 Gm24828-201ENSMUST00000178507 108 ntBASIC0.12□□□□□ -2.39
Ccdc43Q9CR29 Gm23052-201ENSMUST00000178633 108 ntBASIC0.12□□□□□ -2.39
Ccdc43Q9CR29 Gm25729-201ENSMUST00000179050 108 ntBASIC0.12□□□□□ -2.39
Ccdc43Q9CR29 Gm25359-201ENSMUST00000179315 108 ntBASIC0.12□□□□□ -2.39
Ccdc43Q9CR29 Gm22624-201ENSMUST00000179913 108 ntBASIC0.12□□□□□ -2.39
Ccdc43Q9CR29 Gm31450-201ENSMUST00000220668 132 ntTSL 2 BASIC0.12□□□□□ -2.39
Ccdc43Q9CR29 Gm25895-201ENSMUST00000083714 100 ntBASIC0.12□□□□□ -2.39
Ccdc43Q9CR29 Gm24030-201ENSMUST00000083931 164 ntBASIC0.12□□□□□ -2.39
Retrieved 100 of 76,532 protein–RNA pairs in 175.1 ms