Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Mir544-201ENSMUST00000103813 78 ntBASIC1.46□□□□□ -2.18
ShhQ62226 Gm11792-201ENSMUST00000120640 168 ntBASIC1.46□□□□□ -2.18
ShhQ62226 Gm24141-201ENSMUST00000122776 115 ntBASIC1.46□□□□□ -2.18
ShhQ62226 Gm23328-201ENSMUST00000157418 132 ntBASIC1.46□□□□□ -2.18
ShhQ62226 Gm22349-201ENSMUST00000157864 107 ntBASIC1.46□□□□□ -2.18
ShhQ62226 Gm24229-201ENSMUST00000158830 118 ntBASIC1.46□□□□□ -2.18
ShhQ62226 Mir6985-201ENSMUST00000184641 61 ntBASIC1.46□□□□□ -2.18
ShhQ62226 Trgj2-201ENSMUST00000197113 60 ntAPPRIS P1 BASIC1.46□□□□□ -2.18
ShhQ62226 Gm23303-201ENSMUST00000082714 152 ntBASIC1.46□□□□□ -2.18
ShhQ62226 Snord14a-201ENSMUST00000082807 87 ntBASIC1.46□□□□□ -2.18
ShhQ62226 Gm24406-201ENSMUST00000083026 128 ntBASIC1.46□□□□□ -2.18
ShhQ62226 Mir320-201ENSMUST00000083594 82 ntBASIC1.46□□□□□ -2.18
ShhQ62226 Gm10730-201ENSMUST00000194097 2723 ntBASIC1.45□□□□□ -2.18
ShhQ62226 Mir343-201ENSMUST00000102360 75 ntBASIC1.45□□□□□ -2.18
ShhQ62226 Gm26076-201ENSMUST00000104065 105 ntBASIC1.45□□□□□ -2.18
ShhQ62226 Gm23651-201ENSMUST00000116755 120 ntBASIC1.45□□□□□ -2.18
ShhQ62226 Gm23859-201ENSMUST00000158383 64 ntBASIC1.45□□□□□ -2.18
ShhQ62226 Gm23340-201ENSMUST00000158955 123 ntBASIC1.45□□□□□ -2.18
ShhQ62226 Gm25958-201ENSMUST00000175114 71 ntBASIC1.45□□□□□ -2.18
ShhQ62226 Gm23922-201ENSMUST00000178792 79 ntBASIC1.45□□□□□ -2.18
ShhQ62226 Gm24657-201ENSMUST00000180085 79 ntBASIC1.45□□□□□ -2.18
ShhQ62226 Gm22996-201ENSMUST00000180236 79 ntBASIC1.45□□□□□ -2.18
ShhQ62226 AC154328.1-201ENSMUST00000225875 307 ntBASIC1.45□□□□□ -2.18
ShhQ62226 Gm8508-201ENSMUST00000061226 363 ntBASIC1.45□□□□□ -2.18
ShhQ62226 Gm23445-201ENSMUST00000082800 107 ntBASIC1.45□□□□□ -2.18
ShhQ62226 Gm22297-201ENSMUST00000083312 106 ntBASIC1.45□□□□□ -2.18
ShhQ62226 Mir466b-3-201ENSMUST00000103806 81 ntBASIC1.44□□□□□ -2.18
ShhQ62226 Gm23336-201ENSMUST00000117023 123 ntBASIC1.44□□□□□ -2.18
ShhQ62226 Gm11644-201ENSMUST00000119735 150 ntBASIC1.44□□□□□ -2.18
ShhQ62226 Gm12309-201ENSMUST00000119889 182 ntBASIC1.44□□□□□ -2.18
ShhQ62226 Gm24717-201ENSMUST00000157522 124 ntBASIC1.44□□□□□ -2.18
ShhQ62226 Mir7241-201ENSMUST00000184532 64 ntBASIC1.44□□□□□ -2.18
ShhQ62226 Gm42506-201ENSMUST00000202009 150 ntBASIC1.44□□□□□ -2.18
ShhQ62226 Gm35309-201ENSMUST00000208337 478 ntTSL 3 BASIC1.44□□□□□ -2.18
ShhQ62226 Gm25814-201ENSMUST00000082754 107 ntBASIC1.44□□□□□ -2.18
ShhQ62226 Mir19b-2-201ENSMUST00000083539 84 ntBASIC1.44□□□□□ -2.18
ShhQ62226 Mir92-2-201ENSMUST00000083679 91 ntBASIC1.44□□□□□ -2.18
ShhQ62226 Gm13231-201ENSMUST00000119218 2850 ntBASIC1.44□□□□□ -2.18
ShhQ62226 Vmn1r75-207ENSMUST00000228646 4466 ntAPPRIS ALT2 BASIC1.44□□□□□ -2.18
ShhQ62226 Gm24250-201ENSMUST00000157320 135 ntBASIC1.43□□□□□ -2.18
ShhQ62226 Gm23504-201ENSMUST00000158988 95 ntBASIC1.43□□□□□ -2.18
ShhQ62226 Mir1954-201ENSMUST00000175595 86 ntBASIC1.43□□□□□ -2.18
ShhQ62226 Gm23770-201ENSMUST00000178009 108 ntBASIC1.43□□□□□ -2.18
ShhQ62226 Gm22832-201ENSMUST00000178022 108 ntBASIC1.43□□□□□ -2.18
ShhQ62226 Gm23863-201ENSMUST00000178265 108 ntBASIC1.43□□□□□ -2.18
ShhQ62226 Gm24828-201ENSMUST00000178507 108 ntBASIC1.43□□□□□ -2.18
ShhQ62226 Gm23052-201ENSMUST00000178633 108 ntBASIC1.43□□□□□ -2.18
ShhQ62226 Gm25729-201ENSMUST00000179050 108 ntBASIC1.43□□□□□ -2.18
ShhQ62226 Gm25359-201ENSMUST00000179315 108 ntBASIC1.43□□□□□ -2.18
ShhQ62226 Gm22624-201ENSMUST00000179913 108 ntBASIC1.43□□□□□ -2.18
ShhQ62226 Gm27792-201ENSMUST00000184031 115 ntBASIC1.43□□□□□ -2.18
ShhQ62226 AC139186.1-201ENSMUST00000197610 94 ntBASIC1.43□□□□□ -2.18
ShhQ62226 Olfr1485-ps1-201ENSMUST00000208420 370 ntBASIC1.43□□□□□ -2.18
ShhQ62226 AC153512.4-201ENSMUST00000217783 426 ntTSL 3 BASIC1.43□□□□□ -2.18
ShhQ62226 Snord1a-201ENSMUST00000083160 74 ntBASIC1.43□□□□□ -2.18
ShhQ62226 Gm10813-201ENSMUST00000099936 90 ntBASIC1.43□□□□□ -2.18
ShhQ62226 Gm25992-201ENSMUST00000102437 109 ntBASIC1.42□□□□□ -2.18
ShhQ62226 Gm24174-201ENSMUST00000158933 111 ntBASIC1.42□□□□□ -2.18
ShhQ62226 Gm16539-201ENSMUST00000160086 327 ntBASIC1.42□□□□□ -2.18
ShhQ62226 Mir3098-201ENSMUST00000175416 87 ntBASIC1.42□□□□□ -2.18
ShhQ62226 Mir6351-201ENSMUST00000183826 99 ntBASIC1.42□□□□□ -2.18
ShhQ62226 Gm45492-201ENSMUST00000211611 288 ntBASIC1.42□□□□□ -2.18
ShhQ62226 AC164561.1-201ENSMUST00000220414 115 ntBASIC1.42□□□□□ -2.18
ShhQ62226 Gm42718-201ENSMUST00000197319 2681 ntBASIC1.42□□□□□ -2.18
ShhQ62226 Gm11250-201ENSMUST00000142137 306 ntTSL 5 BASIC1.41□□□□□ -2.18
ShhQ62226 Gm22082-201ENSMUST00000157587 161 ntBASIC1.41□□□□□ -2.18
ShhQ62226 Gm23122-201ENSMUST00000157645 103 ntBASIC1.41□□□□□ -2.18
ShhQ62226 Gm23558-201ENSMUST00000157823 80 ntBASIC1.41□□□□□ -2.18
ShhQ62226 Gm24747-201ENSMUST00000157835 87 ntBASIC1.41□□□□□ -2.18
ShhQ62226 Gm24880-201ENSMUST00000158776 85 ntBASIC1.41□□□□□ -2.18
ShhQ62226 Gm22929-201ENSMUST00000175517 107 ntBASIC1.41□□□□□ -2.18
ShhQ62226 Gm27851-201ENSMUST00000183529 63 ntBASIC1.41□□□□□ -2.18
ShhQ62226 Gm27265-201ENSMUST00000183559 77 ntBASIC1.41□□□□□ -2.18
ShhQ62226 Gm44240-201ENSMUST00000204015 2654 ntBASIC1.41□□□□□ -2.18
ShhQ62226 Olfr921-202ENSMUST00000213958 4012 ntAPPRIS P1 TSL 2 BASIC1.4□□□□□ -2.19
ShhQ62226 Gm45886-201ENSMUST00000148141 342 ntTSL 5 BASIC1.4□□□□□ -2.19
ShhQ62226 Gm25060-201ENSMUST00000157374 130 ntBASIC1.4□□□□□ -2.19
ShhQ62226 Gm22079-201ENSMUST00000157592 106 ntBASIC1.4□□□□□ -2.19
ShhQ62226 Gm22200-201ENSMUST00000158614 67 ntBASIC1.4□□□□□ -2.19
ShhQ62226 Gm24676-201ENSMUST00000158758 75 ntBASIC1.4□□□□□ -2.19
ShhQ62226 Gm25838-201ENSMUST00000158920 120 ntBASIC1.4□□□□□ -2.19
ShhQ62226 Mir6928-201ENSMUST00000185166 70 ntBASIC1.4□□□□□ -2.19
ShhQ62226 Gm45471-201ENSMUST00000211270 281 ntBASIC1.4□□□□□ -2.19
ShhQ62226 CT485608.2-201ENSMUST00000227210 291 ntBASIC1.4□□□□□ -2.19
ShhQ62226 Gm10351-201ENSMUST00000087694 125 ntBASIC1.4□□□□□ -2.19
ShhQ62226 Gm37824-201ENSMUST00000193430 3236 ntBASIC1.4□□□□□ -2.19
ShhQ62226 Olfr1431-202ENSMUST00000213759 3001 ntAPPRIS P1 TSL 5 BASIC1.39□□□□□ -2.19
ShhQ62226 Gm22999-201ENSMUST00000157082 88 ntBASIC1.39□□□□□ -2.19
ShhQ62226 Gm22164-201ENSMUST00000158413 106 ntBASIC1.39□□□□□ -2.19
ShhQ62226 Gm17490-201ENSMUST00000166779 63 ntAPPRIS P1 TSL 5 BASIC1.39□□□□□ -2.19
ShhQ62226 Gm22565-201ENSMUST00000175540 69 ntBASIC1.39□□□□□ -2.19
ShhQ62226 Gm27248-201ENSMUST00000184004 166 ntBASIC1.39□□□□□ -2.19
ShhQ62226 Gm44458-201ENSMUST00000196594 143 ntBASIC1.39□□□□□ -2.19
ShhQ62226 Gm45268-201ENSMUST00000210046 370 ntBASIC1.39□□□□□ -2.19
ShhQ62226 Gm23299-201ENSMUST00000082708 79 ntBASIC1.39□□□□□ -2.19
ShhQ62226 Olfr307-203ENSMUST00000217494 4515 ntAPPRIS P1 TSL 5 BASIC1.38□□□□□ -2.19
ShhQ62226 Gm44489-201ENSMUST00000104619 97 ntBASIC1.38□□□□□ -2.19
ShhQ62226 Gm25541-201ENSMUST00000116888 126 ntBASIC1.38□□□□□ -2.19
ShhQ62226 Gm14923-201ENSMUST00000118270 155 ntBASIC1.38□□□□□ -2.19
ShhQ62226 Gm22796-201ENSMUST00000157234 106 ntBASIC1.38□□□□□ -2.19
Retrieved 100 of 76,532 protein–RNA pairs in 85.7 ms