Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Gm23329-201ENSMUST00000157415 108 ntBASIC2□□□□□ -2.09
Ddb1Q3U1J4 Gm22387-201ENSMUST00000158191 131 ntBASIC2□□□□□ -2.09
Ddb1Q3U1J4 Gm25771-201ENSMUST00000158565 144 ntBASIC2□□□□□ -2.09
Ddb1Q3U1J4 Gm22888-201ENSMUST00000158640 77 ntBASIC2□□□□□ -2.09
Ddb1Q3U1J4 Gm45544-201ENSMUST00000211130 88 ntBASIC2□□□□□ -2.09
Ddb1Q3U1J4 Gm26326-201ENSMUST00000083070 129 ntBASIC2□□□□□ -2.09
Ddb1Q3U1J4 Olfr1448-203ENSMUST00000213713 4336 ntAPPRIS P1 TSL 5 BASIC2□□□□□ -2.09
Ddb1Q3U1J4 Gm14709-201ENSMUST00000121225 304 ntBASIC1.99□□□□□ -2.09
Ddb1Q3U1J4 Gm37796-201ENSMUST00000195327 134 ntBASIC1.99□□□□□ -2.09
Ddb1Q3U1J4 Sprr2c-ps-201ENSMUST00000195581 301 ntBASIC1.99□□□□□ -2.09
Ddb1Q3U1J4 AC069074.1-201ENSMUST00000220048 381 ntBASIC1.99□□□□□ -2.09
Ddb1Q3U1J4 Gm23100-201ENSMUST00000083455 141 ntBASIC1.99□□□□□ -2.09
Ddb1Q3U1J4 Gm22576-201ENSMUST00000083733 104 ntBASIC1.99□□□□□ -2.09
Ddb1Q3U1J4 G2e3-203ENSMUST00000121521 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC1.98□□□□□ -2.09
Ddb1Q3U1J4 Gm23558-201ENSMUST00000157823 80 ntBASIC1.98□□□□□ -2.09
Ddb1Q3U1J4 Gm26084-201ENSMUST00000157903 104 ntBASIC1.98□□□□□ -2.09
Ddb1Q3U1J4 Gm24000-201ENSMUST00000158063 89 ntBASIC1.98□□□□□ -2.09
Ddb1Q3U1J4 Gm24345-201ENSMUST00000158706 124 ntBASIC1.98□□□□□ -2.09
Ddb1Q3U1J4 Gm26741-201ENSMUST00000180473 87 ntAPPRIS P1 BASIC1.98□□□□□ -2.09
Ddb1Q3U1J4 Mir6394-201ENSMUST00000184738 99 ntBASIC1.98□□□□□ -2.09
Ddb1Q3U1J4 Gm45754-201ENSMUST00000212380 279 ntBASIC1.98□□□□□ -2.09
Ddb1Q3U1J4 Gm24805-201ENSMUST00000082931 104 ntBASIC1.98□□□□□ -2.09
Ddb1Q3U1J4 Gm25089-201ENSMUST00000102015 79 ntBASIC1.97□□□□□ -2.09
Ddb1Q3U1J4 Gm24842-201ENSMUST00000158681 54 ntBASIC1.97□□□□□ -2.09
Ddb1Q3U1J4 Gm25840-201ENSMUST00000177821 79 ntBASIC1.97□□□□□ -2.09
Ddb1Q3U1J4 Gm24952-201ENSMUST00000177909 79 ntBASIC1.97□□□□□ -2.09
Ddb1Q3U1J4 Gm23682-201ENSMUST00000178146 79 ntBASIC1.97□□□□□ -2.09
Ddb1Q3U1J4 Gm24652-201ENSMUST00000178223 79 ntBASIC1.97□□□□□ -2.09
Ddb1Q3U1J4 Gm22629-201ENSMUST00000178272 79 ntBASIC1.97□□□□□ -2.09
Ddb1Q3U1J4 Gm24021-201ENSMUST00000178435 79 ntBASIC1.97□□□□□ -2.09
Ddb1Q3U1J4 Gm22274-201ENSMUST00000178441 79 ntBASIC1.97□□□□□ -2.09
Ddb1Q3U1J4 Gm22050-201ENSMUST00000178442 79 ntBASIC1.97□□□□□ -2.09
Ddb1Q3U1J4 Gm23688-201ENSMUST00000178502 79 ntBASIC1.97□□□□□ -2.09
Ddb1Q3U1J4 Gm23944-201ENSMUST00000178607 79 ntBASIC1.97□□□□□ -2.09
Ddb1Q3U1J4 Gm26283-201ENSMUST00000178625 79 ntBASIC1.97□□□□□ -2.09
Ddb1Q3U1J4 Gm25452-201ENSMUST00000178776 79 ntBASIC1.97□□□□□ -2.09
Ddb1Q3U1J4 Gm23286-201ENSMUST00000178963 79 ntBASIC1.97□□□□□ -2.09
Ddb1Q3U1J4 Gm22640-201ENSMUST00000179035 79 ntBASIC1.97□□□□□ -2.09
Ddb1Q3U1J4 Gm25984-201ENSMUST00000179129 79 ntBASIC1.97□□□□□ -2.09
Ddb1Q3U1J4 Gm25585-201ENSMUST00000179469 79 ntBASIC1.97□□□□□ -2.09
Ddb1Q3U1J4 Gm26374-201ENSMUST00000179737 79 ntBASIC1.97□□□□□ -2.09
Ddb1Q3U1J4 Gm24040-201ENSMUST00000179786 79 ntBASIC1.97□□□□□ -2.09
Ddb1Q3U1J4 Gm25017-201ENSMUST00000179805 79 ntBASIC1.97□□□□□ -2.09
Ddb1Q3U1J4 Gm23618-201ENSMUST00000179912 79 ntBASIC1.97□□□□□ -2.09
Ddb1Q3U1J4 Gm26284-201ENSMUST00000180107 79 ntBASIC1.97□□□□□ -2.09
Ddb1Q3U1J4 Gm24570-201ENSMUST00000180314 79 ntBASIC1.97□□□□□ -2.09
Ddb1Q3U1J4 Gm24654-201ENSMUST00000180315 79 ntBASIC1.97□□□□□ -2.09
Ddb1Q3U1J4 Gm27517-201ENSMUST00000184347 236 ntBASIC1.97□□□□□ -2.09
Ddb1Q3U1J4 Gm42855-201ENSMUST00000197388 253 ntBASIC1.97□□□□□ -2.09
Ddb1Q3U1J4 CT025689.3-201ENSMUST00000223817 301 ntBASIC1.97□□□□□ -2.09
Ddb1Q3U1J4 Gm22283-201ENSMUST00000082556 161 ntBASIC1.97□□□□□ -2.09
Ddb1Q3U1J4 Gm25855-201ENSMUST00000082787 72 ntBASIC1.97□□□□□ -2.09
Ddb1Q3U1J4 Gm24406-201ENSMUST00000083026 128 ntBASIC1.97□□□□□ -2.09
Ddb1Q3U1J4 Mir200b-201ENSMUST00000083615 70 ntBASIC1.97□□□□□ -2.09
Ddb1Q3U1J4 Mirlet7f-2-201ENSMUST00000083668 83 ntBASIC1.97□□□□□ -2.09
Ddb1Q3U1J4 Gm43960-201ENSMUST00000204249 5020 ntBASIC1.96□□□□□ -2.1
Ddb1Q3U1J4 Mir873a-201ENSMUST00000104863 77 ntBASIC1.96□□□□□ -2.1
Ddb1Q3U1J4 Gm11856-201ENSMUST00000118712 276 ntBASIC1.96□□□□□ -2.1
Ddb1Q3U1J4 Gm14568-201ENSMUST00000119321 294 ntBASIC1.96□□□□□ -2.1
Ddb1Q3U1J4 Gm23434-201ENSMUST00000157179 100 ntBASIC1.96□□□□□ -2.1
Ddb1Q3U1J4 Gm24783-201ENSMUST00000157639 100 ntBASIC1.96□□□□□ -2.1
Ddb1Q3U1J4 Gm25044-201ENSMUST00000158603 104 ntBASIC1.96□□□□□ -2.1
Ddb1Q3U1J4 Gm25750-201ENSMUST00000175483 112 ntBASIC1.96□□□□□ -2.1
Ddb1Q3U1J4 Gm25496-201ENSMUST00000104430 120 ntBASIC1.95□□□□□ -2.1
Ddb1Q3U1J4 Mir880-201ENSMUST00000104809 78 ntBASIC1.95□□□□□ -2.1
Ddb1Q3U1J4 Gm16225-201ENSMUST00000146152 276 ntTSL 5 BASIC1.95□□□□□ -2.1
Ddb1Q3U1J4 Gm23996-201ENSMUST00000158062 131 ntBASIC1.95□□□□□ -2.1
Ddb1Q3U1J4 Gm23859-201ENSMUST00000158383 64 ntBASIC1.95□□□□□ -2.1
Ddb1Q3U1J4 Gm26073-201ENSMUST00000179906 127 ntBASIC1.95□□□□□ -2.1
Ddb1Q3U1J4 Gm27493-201ENSMUST00000184128 78 ntBASIC1.95□□□□□ -2.1
Ddb1Q3U1J4 1700016B01Rik-201ENSMUST00000197688 270 ntTSL 1 (best) BASIC1.95□□□□□ -2.1
Ddb1Q3U1J4 Gm43381-201ENSMUST00000198553 165 ntBASIC1.95□□□□□ -2.1
Ddb1Q3U1J4 Olfr1007-ps1-201ENSMUST00000217468 138 ntBASIC1.95□□□□□ -2.1
Ddb1Q3U1J4 Olfr188-ps1-201ENSMUST00000205766 4706 ntTSL 5 BASIC1.95□□□□□ -2.1
Ddb1Q3U1J4 Gm24342-201ENSMUST00000103907 104 ntBASIC1.94□□□□□ -2.1
Ddb1Q3U1J4 Gm24246-201ENSMUST00000157315 132 ntBASIC1.94□□□□□ -2.1
Ddb1Q3U1J4 Gm23253-201ENSMUST00000157441 104 ntBASIC1.94□□□□□ -2.1
Ddb1Q3U1J4 Gm25364-201ENSMUST00000158851 107 ntBASIC1.94□□□□□ -2.1
Ddb1Q3U1J4 Gm23504-201ENSMUST00000158988 95 ntBASIC1.94□□□□□ -2.1
Ddb1Q3U1J4 Gm27656-201ENSMUST00000185055 80 ntBASIC1.94□□□□□ -2.1
Ddb1Q3U1J4 AC126939.3-201ENSMUST00000226061 166 ntBASIC1.94□□□□□ -2.1
Ddb1Q3U1J4 Gm23509-201ENSMUST00000083080 160 ntBASIC1.94□□□□□ -2.1
Ddb1Q3U1J4 Gm22884-201ENSMUST00000083127 140 ntBASIC1.94□□□□□ -2.1
Ddb1Q3U1J4 Gm26168-201ENSMUST00000083787 112 ntBASIC1.94□□□□□ -2.1
Ddb1Q3U1J4 Gm24030-201ENSMUST00000083931 164 ntBASIC1.94□□□□□ -2.1
Ddb1Q3U1J4 Olfr921-202ENSMUST00000213958 4012 ntAPPRIS P1 TSL 2 BASIC1.94□□□□□ -2.1
Ddb1Q3U1J4 Gm25623-201ENSMUST00000157216 108 ntBASIC1.93□□□□□ -2.1
Ddb1Q3U1J4 Gm22796-201ENSMUST00000157234 106 ntBASIC1.93□□□□□ -2.1
Ddb1Q3U1J4 Gm24222-201ENSMUST00000158834 93 ntBASIC1.93□□□□□ -2.1
Ddb1Q3U1J4 Gm24165-201ENSMUST00000082718 128 ntBASIC1.93□□□□□ -2.1
Ddb1Q3U1J4 4930522L14Rik-202ENSMUST00000112547 2001 ntAPPRIS P1 TSL 5 BASIC1.92□□□□□ -2.1
Ddb1Q3U1J4 Gm26213-201ENSMUST00000158582 110 ntBASIC1.92□□□□□ -2.1
Ddb1Q3U1J4 Mir1954-201ENSMUST00000175595 86 ntBASIC1.92□□□□□ -2.1
Ddb1Q3U1J4 Gm22070-201ENSMUST00000178475 107 ntBASIC1.92□□□□□ -2.1
Ddb1Q3U1J4 Mir6379-201ENSMUST00000183392 115 ntBASIC1.92□□□□□ -2.1
Ddb1Q3U1J4 mt-Tt-201ENSMUST00000082422 67 ntBASIC1.92□□□□□ -2.1
Ddb1Q3U1J4 Gm18795-202ENSMUST00000223373 2920 ntBASIC1.92□□□□□ -2.1
Ddb1Q3U1J4 Gm14674-201ENSMUST00000117816 342 ntBASIC1.91□□□□□ -2.1
Ddb1Q3U1J4 Gm23328-201ENSMUST00000157418 132 ntBASIC1.91□□□□□ -2.1
Ddb1Q3U1J4 Gm23340-201ENSMUST00000158955 123 ntBASIC1.91□□□□□ -2.1
Retrieved 100 of 76,532 protein–RNA pairs in 153.6 ms