| Brd4 | Q9ESU6 | Gm27993-201 | ENSMUST00000184362 | 85 nt | BASIC | -0.29 | □□□□□ -2.46 | | |
| Brd4 | Q9ESU6 | Gm38364-201 | ENSMUST00000191814 | 179 nt | BASIC | -0.29 | □□□□□ -2.46 | | |
| Brd4 | Q9ESU6 | AC132437.1-201 | ENSMUST00000218308 | 320 nt | BASIC | -0.29 | □□□□□ -2.46 | | |
| Brd4 | Q9ESU6 | AC154484.1-201 | ENSMUST00000227311 | 771 nt | BASIC | -0.29 | □□□□□ -2.46 | | |
| Brd4 | Q9ESU6 | Gm22303-201 | ENSMUST00000082686 | 122 nt | BASIC | -0.29 | □□□□□ -2.46 | | |
| Brd4 | Q9ESU6 | Gm26123-201 | ENSMUST00000083363 | 135 nt | BASIC | -0.29 | □□□□□ -2.46 | | |
| Brd4 | Q9ESU6 | Gm24372-201 | ENSMUST00000104400 | 110 nt | BASIC | -0.3 | □□□□□ -2.46 | | |
| Brd4 | Q9ESU6 | Gm24509-201 | ENSMUST00000157086 | 101 nt | BASIC | -0.3 | □□□□□ -2.46 | | |
| Brd4 | Q9ESU6 | Gm25358-201 | ENSMUST00000157189 | 101 nt | BASIC | -0.3 | □□□□□ -2.46 | | |
| Brd4 | Q9ESU6 | Gm22598-201 | ENSMUST00000157600 | 127 nt | BASIC | -0.3 | □□□□□ -2.46 | | |
| Brd4 | Q9ESU6 | Gm44803-201 | ENSMUST00000204384 | 156 nt | BASIC | -0.3 | □□□□□ -2.46 | | |
| Brd4 | Q9ESU6 | AC164297.5-201 | ENSMUST00000224365 | 198 nt | BASIC | -0.3 | □□□□□ -2.46 | | |
| Brd4 | Q9ESU6 | Snora75-201 | ENSMUST00000082903 | 133 nt | BASIC | -0.3 | □□□□□ -2.46 | | |
| Brd4 | Q9ESU6 | Mir18-201 | ENSMUST00000083469 | 96 nt | BASIC | -0.3 | □□□□□ -2.46 | | |
| Brd4 | Q9ESU6 | Gm25006-201 | ENSMUST00000083813 | 107 nt | BASIC | -0.3 | □□□□□ -2.46 | | |
| Brd4 | Q9ESU6 | Gm15002-201 | ENSMUST00000118406 | 452 nt | BASIC | -0.3 | □□□□□ -2.46 | | |
| Brd4 | Q9ESU6 | Gm22321-201 | ENSMUST00000157152 | 104 nt | BASIC | -0.3 | □□□□□ -2.46 | | |
| Brd4 | Q9ESU6 | Gm25444-201 | ENSMUST00000158999 | 113 nt | BASIC | -0.3 | □□□□□ -2.46 | | |
| Brd4 | Q9ESU6 | Vmn2r-ps78-201 | ENSMUST00000173350 | 308 nt | BASIC | -0.3 | □□□□□ -2.46 | | |
| Brd4 | Q9ESU6 | Gm27755-201 | ENSMUST00000184623 | 132 nt | BASIC | -0.3 | □□□□□ -2.46 | | |
| Brd4 | Q9ESU6 | Trgj2-201 | ENSMUST00000197113 | 60 nt | APPRIS P1 BASIC | -0.3 | □□□□□ -2.46 | | |
| Brd4 | Q9ESU6 | Mir721-201 | ENSMUST00000200230 | 88 nt | BASIC | -0.3 | □□□□□ -2.46 | | |
| Brd4 | Q9ESU6 | Gm23509-201 | ENSMUST00000083080 | 160 nt | BASIC | -0.3 | □□□□□ -2.46 | | |
| Brd4 | Q9ESU6 | Gm25136-201 | ENSMUST00000083253 | 115 nt | BASIC | -0.3 | □□□□□ -2.46 | | |
| Brd4 | Q9ESU6 | Gm26071-201 | ENSMUST00000083261 | 107 nt | BASIC | -0.3 | □□□□□ -2.46 | | |
| Brd4 | Q9ESU6 | Mir532-201 | ENSMUST00000093630 | 96 nt | BASIC | -0.3 | □□□□□ -2.46 | | |
| Brd4 | Q9ESU6 | Mir3473d-201 | ENSMUST00000175346 | 81 nt | BASIC | -0.31 | □□□□□ -2.46 | | |
| Brd4 | Q9ESU6 | Gm38183-201 | ENSMUST00000193189 | 205 nt | BASIC | -0.31 | □□□□□ -2.46 | | |
| Brd4 | Q9ESU6 | Gm45673-201 | ENSMUST00000210293 | 358 nt | BASIC | -0.31 | □□□□□ -2.46 | | |
| Brd4 | Q9ESU6 | AL845349.1-201 | ENSMUST00000213794 | 78 nt | BASIC | -0.31 | □□□□□ -2.46 | | |
| Brd4 | Q9ESU6 | AL627387.1-201 | ENSMUST00000226063 | 250 nt | BASIC | -0.31 | □□□□□ -2.46 | | |
| Brd4 | Q9ESU6 | AC115735.2-201 | ENSMUST00000227135 | 351 nt | BASIC | -0.31 | □□□□□ -2.46 | | |
| Brd4 | Q9ESU6 | Gm14792-201 | ENSMUST00000119725 | 258 nt | BASIC | -0.32 | □□□□□ -2.46 | | |
| Brd4 | Q9ESU6 | Gm23788-201 | ENSMUST00000122535 | 106 nt | BASIC | -0.32 | □□□□□ -2.46 | | |
| Brd4 | Q9ESU6 | Gm22814-201 | ENSMUST00000157452 | 104 nt | BASIC | -0.32 | □□□□□ -2.46 | | |
| Brd4 | Q9ESU6 | Gm37338-201 | ENSMUST00000191986 | 127 nt | BASIC | -0.32 | □□□□□ -2.46 | | |
| Brd4 | Q9ESU6 | Sva-201 | ENSMUST00000024059 | 651 nt | APPRIS P2 TSL 1 (best) BASIC | -0.32 | □□□□□ -2.46 | | |
| Brd4 | Q9ESU6 | Gm26495-201 | ENSMUST00000083152 | 137 nt | BASIC | -0.32 | □□□□□ -2.46 | | |
| Brd4 | Q9ESU6 | Mir145a-201 | ENSMUST00000083658 | 70 nt | BASIC | -0.32 | □□□□□ -2.46 | | |
| Brd4 | Q9ESU6 | Gm26011-201 | ENSMUST00000104410 | 104 nt | BASIC | -0.33 | □□□□□ -2.46 | | |
| Brd4 | Q9ESU6 | Gm23314-201 | ENSMUST00000157218 | 107 nt | BASIC | -0.33 | □□□□□ -2.46 | | |
| Brd4 | Q9ESU6 | Gm22815-201 | ENSMUST00000157451 | 62 nt | BASIC | -0.33 | □□□□□ -2.46 | | |
| Brd4 | Q9ESU6 | Gm26712-201 | ENSMUST00000180813 | 217 nt | BASIC | -0.33 | □□□□□ -2.46 | | |
| Brd4 | Q9ESU6 | Gm44977-201 | ENSMUST00000205283 | 420 nt | BASIC | -0.33 | □□□□□ -2.46 | | |
| Brd4 | Q9ESU6 | AC145736.2-201 | ENSMUST00000216305 | 365 nt | BASIC | -0.33 | □□□□□ -2.46 | | |
| Brd4 | Q9ESU6 | Gm22981-201 | ENSMUST00000082611 | 75 nt | BASIC | -0.33 | □□□□□ -2.46 | | |
| Brd4 | Q9ESU6 | Mir377-201 | ENSMUST00000083504 | 68 nt | BASIC | -0.33 | □□□□□ -2.46 | | |
| Brd4 | Q9ESU6 | Gm10267-201 | ENSMUST00000091916 | 258 nt | APPRIS ALT2 TSL 5 BASIC | -0.33 | □□□□□ -2.46 | | |
| Brd4 | Q9ESU6 | Gm22324-201 | ENSMUST00000158903 | 114 nt | BASIC | -0.34 | □□□□□ -2.46 | | |
| Brd4 | Q9ESU6 | 1700129C05Rik-203 | ENSMUST00000162271 | 325 nt | APPRIS ALT2 TSL 3 BASIC | -0.34 | □□□□□ -2.46 | | |
| Brd4 | Q9ESU6 | Gm24810-201 | ENSMUST00000175317 | 70 nt | BASIC | -0.34 | □□□□□ -2.46 | | |
| Brd4 | Q9ESU6 | Gm23571-201 | ENSMUST00000180073 | 127 nt | BASIC | -0.34 | □□□□□ -2.46 | | |
| Brd4 | Q9ESU6 | Mir6342-201 | ENSMUST00000183870 | 125 nt | BASIC | -0.34 | □□□□□ -2.46 | | |
| Brd4 | Q9ESU6 | Gm10105-201 | ENSMUST00000184601 | 270 nt | BASIC | -0.34 | □□□□□ -2.46 | | |
| Brd4 | Q9ESU6 | Mir3065-201 | ENSMUST00000198674 | 87 nt | BASIC | -0.34 | □□□□□ -2.46 | | |
| Brd4 | Q9ESU6 | AC154282.1-201 | ENSMUST00000223154 | 265 nt | BASIC | -0.34 | □□□□□ -2.46 | | |
| Brd4 | Q9ESU6 | Gm24150-201 | ENSMUST00000082759 | 104 nt | BASIC | -0.34 | □□□□□ -2.46 | | |
| Brd4 | Q9ESU6 | Gm21833-201 | ENSMUST00000177665 | 1500 nt | APPRIS P1 BASIC | -0.34 | □□□□□ -2.46 | | |
| Brd4 | Q9ESU6 | mt-Nd4-201 | ENSMUST00000082414 | 1378 nt | APPRIS P1 BASIC | -0.35 | □□□□□ -2.47 | | |
| Brd4 | Q9ESU6 | Gm13922-201 | ENSMUST00000119505 | 156 nt | BASIC | -0.35 | □□□□□ -2.47 | | |
| Brd4 | Q9ESU6 | Gm24504-201 | ENSMUST00000157679 | 100 nt | BASIC | -0.35 | □□□□□ -2.47 | | |
| Brd4 | Q9ESU6 | Gm10772-201 | ENSMUST00000167981 | 255 nt | APPRIS P1 BASIC | -0.35 | □□□□□ -2.47 | | |
| Brd4 | Q9ESU6 | Gm44602-201 | ENSMUST00000205948 | 132 nt | BASIC | -0.35 | □□□□□ -2.47 | | |
| Brd4 | Q9ESU6 | AC125311.1-201 | ENSMUST00000226950 | 220 nt | BASIC | -0.35 | □□□□□ -2.47 | | |
| Brd4 | Q9ESU6 | Gm10172-201 | ENSMUST00000085929 | 558 nt | BASIC | -0.35 | □□□□□ -2.47 | | |
| Brd4 | Q9ESU6 | Scgb1b24-201 | ENSMUST00000108087 | 279 nt | APPRIS P1 TSL 1 (best) BASIC | -0.36 | □□□□□ -2.47 | | |
| Brd4 | Q9ESU6 | Zfp967-201 | ENSMUST00000108997 | 417 nt | TSL 3 BASIC | -0.36 | □□□□□ -2.47 | | |
| Brd4 | Q9ESU6 | Zfp969-201 | ENSMUST00000109027 | 417 nt | TSL 3 BASIC | -0.36 | □□□□□ -2.47 | | |
| Brd4 | Q9ESU6 | Zfp965-203 | ENSMUST00000109043 | 417 nt | TSL 5 BASIC | -0.36 | □□□□□ -2.47 | | |
| Brd4 | Q9ESU6 | Gm15069-201 | ENSMUST00000117792 | 192 nt | BASIC | -0.36 | □□□□□ -2.47 | | |
| Brd4 | Q9ESU6 | Gm15068-201 | ENSMUST00000119796 | 192 nt | BASIC | -0.36 | □□□□□ -2.47 | | |
| Brd4 | Q9ESU6 | Gm25102-201 | ENSMUST00000122479 | 112 nt | BASIC | -0.36 | □□□□□ -2.47 | | |
| Brd4 | Q9ESU6 | Gm22199-201 | ENSMUST00000122660 | 126 nt | BASIC | -0.36 | □□□□□ -2.47 | | |
| Brd4 | Q9ESU6 | Gm14298-201 | ENSMUST00000139032 | 237 nt | BASIC | -0.36 | □□□□□ -2.47 | | |
| Brd4 | Q9ESU6 | Gm22999-201 | ENSMUST00000157082 | 88 nt | BASIC | -0.36 | □□□□□ -2.47 | | |
| Brd4 | Q9ESU6 | Gm25149-201 | ENSMUST00000157119 | 82 nt | BASIC | -0.36 | □□□□□ -2.47 | | |
| Brd4 | Q9ESU6 | Gm43563-201 | ENSMUST00000196761 | 198 nt | BASIC | -0.36 | □□□□□ -2.47 | | |
| Brd4 | Q9ESU6 | Mir1949-202 | ENSMUST00000199259 | 70 nt | BASIC | -0.36 | □□□□□ -2.47 | | |
| Brd4 | Q9ESU6 | Gm29818-201 | ENSMUST00000218070 | 165 nt | BASIC | -0.36 | □□□□□ -2.47 | | |
| Brd4 | Q9ESU6 | Gm12770-201 | ENSMUST00000121734 | 462 nt | BASIC | -0.37 | □□□□□ -2.47 | | |
| Brd4 | Q9ESU6 | Gm13725-201 | ENSMUST00000122139 | 207 nt | BASIC | -0.37 | □□□□□ -2.47 | | |
| Brd4 | Q9ESU6 | Gm26158-201 | ENSMUST00000158973 | 119 nt | BASIC | -0.37 | □□□□□ -2.47 | | |
| Brd4 | Q9ESU6 | Gm37763-201 | ENSMUST00000193445 | 120 nt | BASIC | -0.37 | □□□□□ -2.47 | | |
| Brd4 | Q9ESU6 | Mir3967-201 | ENSMUST00000198710 | 68 nt | BASIC | -0.37 | □□□□□ -2.47 | | |
| Brd4 | Q9ESU6 | B230307C23Rik-201 | ENSMUST00000113729 | 192 nt | TSL 5 BASIC | -0.38 | □□□□□ -2.47 | | |
| Brd4 | Q9ESU6 | Gm12647-201 | ENSMUST00000118977 | 265 nt | BASIC | -0.38 | □□□□□ -2.47 | | |
| Brd4 | Q9ESU6 | Gm13801-201 | ENSMUST00000120750 | 160 nt | BASIC | -0.38 | □□□□□ -2.47 | | |
| Brd4 | Q9ESU6 | Ranbp2-ps1-201 | ENSMUST00000184001 | 403 nt | BASIC | -0.38 | □□□□□ -2.47 | | |
| Brd4 | Q9ESU6 | Gm27539-201 | ENSMUST00000184971 | 224 nt | BASIC | -0.38 | □□□□□ -2.47 | | |
| Brd4 | Q9ESU6 | Gm29535-201 | ENSMUST00000185723 | 109 nt | BASIC | -0.38 | □□□□□ -2.47 | | |
| Brd4 | Q9ESU6 | Gm28767-201 | ENSMUST00000188601 | 114 nt | BASIC | -0.38 | □□□□□ -2.47 | | |
| Brd4 | Q9ESU6 | Gm28143-201 | ENSMUST00000191082 | 109 nt | BASIC | -0.38 | □□□□□ -2.47 | | |
| Brd4 | Q9ESU6 | Gm24453-201 | ENSMUST00000083346 | 76 nt | BASIC | -0.38 | □□□□□ -2.47 | | |
| Brd4 | Q9ESU6 | Gm24868-201 | ENSMUST00000157265 | 136 nt | BASIC | -0.38 | □□□□□ -2.47 | | |
| Brd4 | Q9ESU6 | Gm24077-201 | ENSMUST00000158183 | 136 nt | BASIC | -0.38 | □□□□□ -2.47 | | |
| Brd4 | Q9ESU6 | Gm26210-201 | ENSMUST00000158680 | 91 nt | BASIC | -0.38 | □□□□□ -2.47 | | |
| Brd4 | Q9ESU6 | 1700014F14Rik-201 | ENSMUST00000199566 | 197 nt | TSL 1 (best) BASIC | -0.38 | □□□□□ -2.47 | | |
| Brd4 | Q9ESU6 | Gm44959-201 | ENSMUST00000209127 | 231 nt | BASIC | -0.38 | □□□□□ -2.47 | | |
| Brd4 | Q9ESU6 | AC162857.1-201 | ENSMUST00000226614 | 400 nt | BASIC | -0.38 | □□□□□ -2.47 | | |
| Brd4 | Q9ESU6 | Gm26056-201 | ENSMUST00000083043 | 104 nt | BASIC | -0.38 | □□□□□ -2.47 | | |