Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Gm23567-201ENSMUST00000178005 107 ntBASIC1.58□□□□□ -2.16
ShhQ62226 Snord61-201ENSMUST00000083176 71 ntBASIC1.58□□□□□ -2.16
ShhQ62226 Cdh4-202ENSMUST00000098996 69 ntTSL 5 BASIC1.58□□□□□ -2.16
ShhQ62226 Gm26213-201ENSMUST00000158582 110 ntBASIC1.57□□□□□ -2.16
ShhQ62226 Gm25071-201ENSMUST00000175232 70 ntBASIC1.57□□□□□ -2.16
ShhQ62226 Mir6379-201ENSMUST00000183392 115 ntBASIC1.57□□□□□ -2.16
ShhQ62226 Gm43381-201ENSMUST00000198553 165 ntBASIC1.57□□□□□ -2.16
ShhQ62226 Igkv13-78-1-201ENSMUST00000199298 200 ntBASIC1.57□□□□□ -2.16
ShhQ62226 CT033781.2-201ENSMUST00000221113 153 ntBASIC1.57□□□□□ -2.16
ShhQ62226 Gm25588-201ENSMUST00000082501 140 ntBASIC1.57□□□□□ -2.16
ShhQ62226 Gm24805-201ENSMUST00000082931 104 ntBASIC1.57□□□□□ -2.16
ShhQ62226 Mir223-201ENSMUST00000102112 110 ntBASIC1.56□□□□□ -2.16
ShhQ62226 Gm24342-201ENSMUST00000103907 104 ntBASIC1.56□□□□□ -2.16
ShhQ62226 Mir873a-201ENSMUST00000104863 77 ntBASIC1.56□□□□□ -2.16
ShhQ62226 Gm22603-201ENSMUST00000157603 96 ntBASIC1.56□□□□□ -2.16
ShhQ62226 Gm25771-201ENSMUST00000158565 144 ntBASIC1.56□□□□□ -2.16
ShhQ62226 AC158982.2-201ENSMUST00000226283 184 ntBASIC1.56□□□□□ -2.16
ShhQ62226 mt-Ta-201ENSMUST00000082398 69 ntBASIC1.56□□□□□ -2.16
ShhQ62226 Gm23947-201ENSMUST00000093636 107 ntBASIC1.56□□□□□ -2.16
ShhQ62226 Vmn1r75-203ENSMUST00000226855 6548 ntAPPRIS P2 BASIC1.56□□□□□ -2.16
ShhQ62226 Olfr67-201ENSMUST00000183254 3851 ntAPPRIS P1 TSL 5 BASIC1.55□□□□□ -2.16
ShhQ62226 Gm25035-201ENSMUST00000175414 77 ntBASIC1.55□□□□□ -2.16
ShhQ62226 Gm24572-201ENSMUST00000175505 88 ntBASIC1.55□□□□□ -2.16
ShhQ62226 4930522L14Rik-202ENSMUST00000112547 2001 ntAPPRIS P1 TSL 5 BASIC1.55□□□□□ -2.16
ShhQ62226 Vmn1r73-202ENSMUST00000226516 6155 ntAPPRIS P1 BASIC1.55□□□□□ -2.16
ShhQ62226 Olfr730-202ENSMUST00000205837 4903 ntAPPRIS ALT1 BASIC1.55□□□□□ -2.16
ShhQ62226 Mir669b-201ENSMUST00000102172 97 ntBASIC1.54□□□□□ -2.16
ShhQ62226 Gm25364-201ENSMUST00000158851 107 ntBASIC1.54□□□□□ -2.16
ShhQ62226 Selenok-ps4-201ENSMUST00000178835 277 ntBASIC1.54□□□□□ -2.16
ShhQ62226 Mir6394-201ENSMUST00000184738 99 ntBASIC1.54□□□□□ -2.16
ShhQ62226 Mir3969-201ENSMUST00000197106 92 ntBASIC1.54□□□□□ -2.16
ShhQ62226 AC126939.3-201ENSMUST00000226061 166 ntBASIC1.54□□□□□ -2.16
ShhQ62226 Snord90-201ENSMUST00000104568 111 ntBASIC1.53□□□□□ -2.16
ShhQ62226 Scarna3b-201ENSMUST00000157533 139 ntBASIC1.53□□□□□ -2.16
ShhQ62226 Mir3061-201ENSMUST00000175129 91 ntBASIC1.53□□□□□ -2.16
ShhQ62226 Mir7059-201ENSMUST00000184825 59 ntBASIC1.53□□□□□ -2.16
ShhQ62226 Gm44470-201ENSMUST00000203913 142 ntBASIC1.53□□□□□ -2.16
ShhQ62226 Gm44859-201ENSMUST00000207831 94 ntBASIC1.53□□□□□ -2.16
ShhQ62226 AC069074.1-201ENSMUST00000220048 381 ntBASIC1.53□□□□□ -2.16
ShhQ62226 Gm25423-201ENSMUST00000157609 107 ntBASIC1.52□□□□□ -2.17
ShhQ62226 Gm25769-201ENSMUST00000158569 127 ntBASIC1.52□□□□□ -2.17
ShhQ62226 Gm20391-201ENSMUST00000174722 106 ntBASIC1.52□□□□□ -2.17
ShhQ62226 Mir5104-201ENSMUST00000175319 94 ntBASIC1.52□□□□□ -2.17
ShhQ62226 Gm44358-201ENSMUST00000196301 98 ntBASIC1.52□□□□□ -2.17
ShhQ62226 AL772271.1-201ENSMUST00000196848 65 ntBASIC1.52□□□□□ -2.17
ShhQ62226 Gm8219-201ENSMUST00000218309 242 ntBASIC1.52□□□□□ -2.17
ShhQ62226 Gm23722-201ENSMUST00000083002 130 ntBASIC1.52□□□□□ -2.17
ShhQ62226 Gm26326-201ENSMUST00000083070 129 ntBASIC1.52□□□□□ -2.17
ShhQ62226 Gm18795-202ENSMUST00000223373 2920 ntBASIC1.51□□□□□ -2.17
ShhQ62226 Tex15-201ENSMUST00000009772 8405 ntAPPRIS P1 TSL 1 (best) BASIC1.51□□□□□ -2.17
ShhQ62226 Gm26301-201ENSMUST00000104813 95 ntBASIC1.51□□□□□ -2.17
ShhQ62226 Gm22105-201ENSMUST00000116734 116 ntBASIC1.51□□□□□ -2.17
ShhQ62226 Gm14674-201ENSMUST00000117816 342 ntBASIC1.51□□□□□ -2.17
ShhQ62226 Gm15115-201ENSMUST00000121145 264 ntBASIC1.51□□□□□ -2.17
ShhQ62226 2210418O10Rik-202ENSMUST00000135430 195 ntTSL 5 BASIC1.51□□□□□ -2.17
ShhQ62226 Gm21905-201ENSMUST00000177616 87 ntAPPRIS P1 TSL 5 BASIC1.51□□□□□ -2.17
ShhQ62226 Mir7675-201ENSMUST00000184262 58 ntBASIC1.51□□□□□ -2.17
ShhQ62226 Mir7052-201ENSMUST00000184821 65 ntBASIC1.51□□□□□ -2.17
ShhQ62226 Gm37545-201ENSMUST00000186512 148 ntBASIC1.51□□□□□ -2.17
ShhQ62226 Gm18433-201ENSMUST00000192747 197 ntBASIC1.51□□□□□ -2.17
ShhQ62226 Gm24523-201ENSMUST00000083965 132 ntBASIC1.51□□□□□ -2.17
ShhQ62226 Gm10172-201ENSMUST00000085929 558 ntBASIC1.51□□□□□ -2.17
ShhQ62226 Gm23329-201ENSMUST00000157415 108 ntBASIC1.5□□□□□ -2.17
ShhQ62226 Gm18665-201ENSMUST00000189783 270 ntBASIC1.5□□□□□ -2.17
ShhQ62226 Gm23140-201ENSMUST00000082487 107 ntBASIC1.5□□□□□ -2.17
ShhQ62226 Gm24461-201ENSMUST00000082735 103 ntBASIC1.5□□□□□ -2.17
ShhQ62226 Mir9-2-201ENSMUST00000083490 72 ntBASIC1.5□□□□□ -2.17
ShhQ62226 Mir344-201ENSMUST00000083634 95 ntBASIC1.5□□□□□ -2.17
ShhQ62226 Mir451a-201ENSMUST00000093557 72 ntBASIC1.5□□□□□ -2.17
ShhQ62226 Snord71-201ENSMUST00000104361 85 ntBASIC1.49□□□□□ -2.17
ShhQ62226 Gm23653-201ENSMUST00000116751 97 ntBASIC1.49□□□□□ -2.17
ShhQ62226 Gm26090-201ENSMUST00000157897 128 ntBASIC1.49□□□□□ -2.17
ShhQ62226 Gm22386-201ENSMUST00000158192 129 ntBASIC1.49□□□□□ -2.17
ShhQ62226 Gm22403-201ENSMUST00000174919 84 ntBASIC1.49□□□□□ -2.17
ShhQ62226 Gm24154-201ENSMUST00000175261 130 ntBASIC1.49□□□□□ -2.17
ShhQ62226 Gm27656-201ENSMUST00000185055 80 ntBASIC1.49□□□□□ -2.17
ShhQ62226 Gm31450-201ENSMUST00000220668 132 ntTSL 2 BASIC1.49□□□□□ -2.17
ShhQ62226 Snora20-201ENSMUST00000082703 128 ntBASIC1.49□□□□□ -2.17
ShhQ62226 Gm23239-201ENSMUST00000083006 181 ntBASIC1.49□□□□□ -2.17
ShhQ62226 Gm22576-201ENSMUST00000083733 104 ntBASIC1.49□□□□□ -2.17
ShhQ62226 Traj30-201ENSMUST00000103711 59 ntAPPRIS P1 BASIC1.48□□□□□ -2.17
ShhQ62226 Gm26420-201ENSMUST00000104273 103 ntBASIC1.48□□□□□ -2.17
ShhQ62226 Gm23170-201ENSMUST00000157158 106 ntBASIC1.48□□□□□ -2.17
ShhQ62226 Gm23277-201ENSMUST00000157914 136 ntBASIC1.48□□□□□ -2.17
ShhQ62226 Gm26337-201ENSMUST00000178000 79 ntBASIC1.48□□□□□ -2.17
ShhQ62226 Gm28383-201ENSMUST00000187563 139 ntBASIC1.48□□□□□ -2.17
ShhQ62226 Gm25797-201ENSMUST00000082640 107 ntBASIC1.48□□□□□ -2.17
ShhQ62226 Gm25038-201ENSMUST00000082928 130 ntBASIC1.48□□□□□ -2.17
ShhQ62226 Pcdh11x-208ENSMUST00000193899 5394 ntAPPRIS ALT2 TSL 5 BASIC1.48□□□□□ -2.17
ShhQ62226 Gm25915-201ENSMUST00000104265 126 ntBASIC1.47□□□□□ -2.17
ShhQ62226 Mir654-201ENSMUST00000104787 84 ntBASIC1.47□□□□□ -2.17
ShhQ62226 Gm14502-201ENSMUST00000118154 113 ntBASIC1.47□□□□□ -2.17
ShhQ62226 Gm25425-201ENSMUST00000157611 96 ntBASIC1.47□□□□□ -2.17
ShhQ62226 Gm26181-201ENSMUST00000157687 106 ntBASIC1.47□□□□□ -2.17
ShhQ62226 Gm26291-201ENSMUST00000158889 137 ntBASIC1.47□□□□□ -2.17
ShhQ62226 Gm25949-201ENSMUST00000175333 114 ntBASIC1.47□□□□□ -2.17
ShhQ62226 Gm23419-201ENSMUST00000175523 84 ntBASIC1.47□□□□□ -2.17
ShhQ62226 Gm44384-201ENSMUST00000200208 114 ntBASIC1.47□□□□□ -2.17
ShhQ62226 Gm24624-201ENSMUST00000082617 164 ntBASIC1.47□□□□□ -2.17
ShhQ62226 Gm43960-201ENSMUST00000204249 5020 ntBASIC1.47□□□□□ -2.17
Retrieved 100 of 76,532 protein–RNA pairs in 98.7 ms