| Hoxa6 | P09092 | Vmn2r-ps78-201 | ENSMUST00000173350 | 308 nt | BASIC | -0.31 | □□□□□ -2.46 | | |
| Hoxa6 | P09092 | Gm20409-201 | ENSMUST00000173457 | 130 nt | BASIC | -0.31 | □□□□□ -2.46 | | |
| Hoxa6 | P09092 | Gm25241-201 | ENSMUST00000174909 | 84 nt | BASIC | -0.31 | □□□□□ -2.46 | | |
| Hoxa6 | P09092 | Gm25693-201 | ENSMUST00000175443 | 85 nt | BASIC | -0.31 | □□□□□ -2.46 | | |
| Hoxa6 | P09092 | Igkv13-54-1-201 | ENSMUST00000196495 | 303 nt | BASIC | -0.31 | □□□□□ -2.46 | | |
| Hoxa6 | P09092 | Gm44989-201 | ENSMUST00000204749 | 217 nt | BASIC | -0.31 | □□□□□ -2.46 | | |
| Hoxa6 | P09092 | AC159619.2-201 | ENSMUST00000222924 | 401 nt | BASIC | -0.31 | □□□□□ -2.46 | | |
| Hoxa6 | P09092 | Gm23301-201 | ENSMUST00000082713 | 65 nt | BASIC | -0.31 | □□□□□ -2.46 | | |
| Hoxa6 | P09092 | Snora75-201 | ENSMUST00000082903 | 133 nt | BASIC | -0.31 | □□□□□ -2.46 | | |
| Hoxa6 | P09092 | Gm24204-201 | ENSMUST00000082950 | 107 nt | BASIC | -0.31 | □□□□□ -2.46 | | |
| Hoxa6 | P09092 | Gm24887-201 | ENSMUST00000104386 | 108 nt | BASIC | -0.32 | □□□□□ -2.46 | | |
| Hoxa6 | P09092 | Gm22097-201 | ENSMUST00000157929 | 278 nt | BASIC | -0.32 | □□□□□ -2.46 | | |
| Hoxa6 | P09092 | Gm22087-201 | ENSMUST00000158339 | 88 nt | BASIC | -0.32 | □□□□□ -2.46 | | |
| Hoxa6 | P09092 | Gm22841-201 | ENSMUST00000158443 | 62 nt | BASIC | -0.32 | □□□□□ -2.46 | | |
| Hoxa6 | P09092 | Gm25771-201 | ENSMUST00000158565 | 144 nt | BASIC | -0.32 | □□□□□ -2.46 | | |
| Hoxa6 | P09092 | Gm22324-201 | ENSMUST00000158903 | 114 nt | BASIC | -0.32 | □□□□□ -2.46 | | |
| Hoxa6 | P09092 | Gm45738-201 | ENSMUST00000203645 | 233 nt | TSL 5 BASIC | -0.32 | □□□□□ -2.46 | | |
| Hoxa6 | P09092 | Snora19-201 | ENSMUST00000082962 | 132 nt | BASIC | -0.32 | □□□□□ -2.46 | | |
| Hoxa6 | P09092 | Gm23658-201 | ENSMUST00000083233 | 132 nt | BASIC | -0.32 | □□□□□ -2.46 | | |
| Hoxa6 | P09092 | CT030170.3-201 | ENSMUST00000221205 | 1815 nt | BASIC | -0.32 | □□□□□ -2.46 | | |
| Hoxa6 | P09092 | mt-Nd4-201 | ENSMUST00000082414 | 1378 nt | APPRIS P1 BASIC | -0.32 | □□□□□ -2.46 | | |
| Hoxa6 | P09092 | Gm24276-201 | ENSMUST00000102181 | 110 nt | BASIC | -0.33 | □□□□□ -2.46 | | |
| Hoxa6 | P09092 | Traj37-201 | ENSMUST00000103705 | 60 nt | APPRIS P1 BASIC | -0.33 | □□□□□ -2.46 | | |
| Hoxa6 | P09092 | Gm15069-201 | ENSMUST00000117792 | 192 nt | BASIC | -0.33 | □□□□□ -2.46 | | |
| Hoxa6 | P09092 | Gm15068-201 | ENSMUST00000119796 | 192 nt | BASIC | -0.33 | □□□□□ -2.46 | | |
| Hoxa6 | P09092 | Gm26158-201 | ENSMUST00000158973 | 119 nt | BASIC | -0.33 | □□□□□ -2.46 | | |
| Hoxa6 | P09092 | Gm17528-201 | ENSMUST00000171026 | 239 nt | BASIC | -0.33 | □□□□□ -2.46 | | |
| Hoxa6 | P09092 | Gm25328-201 | ENSMUST00000175013 | 107 nt | BASIC | -0.33 | □□□□□ -2.46 | | |
| Hoxa6 | P09092 | Mir669k-201 | ENSMUST00000177742 | 127 nt | BASIC | -0.33 | □□□□□ -2.46 | | |
| Hoxa6 | P09092 | Gm24488-201 | ENSMUST00000179934 | 127 nt | BASIC | -0.33 | □□□□□ -2.46 | | |
| Hoxa6 | P09092 | Gm25673-201 | ENSMUST00000179957 | 127 nt | BASIC | -0.33 | □□□□□ -2.46 | | |
| Hoxa6 | P09092 | Gm25701-201 | ENSMUST00000179988 | 127 nt | BASIC | -0.33 | □□□□□ -2.46 | | |
| Hoxa6 | P09092 | Gm26431-201 | ENSMUST00000180199 | 127 nt | BASIC | -0.33 | □□□□□ -2.46 | | |
| Hoxa6 | P09092 | Gm44959-201 | ENSMUST00000209127 | 231 nt | BASIC | -0.33 | □□□□□ -2.46 | | |
| Hoxa6 | P09092 | AC132615.1-201 | ENSMUST00000213873 | 255 nt | BASIC | -0.33 | □□□□□ -2.46 | | |
| Hoxa6 | P09092 | Gm29818-201 | ENSMUST00000218070 | 165 nt | BASIC | -0.33 | □□□□□ -2.46 | | |
| Hoxa6 | P09092 | Sva-201 | ENSMUST00000024059 | 651 nt | APPRIS P2 TSL 1 (best) BASIC | -0.33 | □□□□□ -2.46 | | |
| Hoxa6 | P09092 | Gm10226-201 | ENSMUST00000072133 | 255 nt | APPRIS P1 BASIC | -0.33 | □□□□□ -2.46 | | |
| Hoxa6 | P09092 | Gm24316-201 | ENSMUST00000083041 | 107 nt | BASIC | -0.33 | □□□□□ -2.46 | | |
| Hoxa6 | P09092 | Gm23881-201 | ENSMUST00000116872 | 66 nt | BASIC | -0.34 | □□□□□ -2.46 | | |
| Hoxa6 | P09092 | Gm13720-201 | ENSMUST00000120741 | 196 nt | BASIC | -0.34 | □□□□□ -2.46 | | |
| Hoxa6 | P09092 | Gm23655-201 | ENSMUST00000122627 | 105 nt | BASIC | -0.34 | □□□□□ -2.46 | | |
| Hoxa6 | P09092 | Gm23640-201 | ENSMUST00000157860 | 104 nt | BASIC | -0.34 | □□□□□ -2.46 | | |
| Hoxa6 | P09092 | Gm26400-201 | ENSMUST00000175012 | 85 nt | BASIC | -0.34 | □□□□□ -2.46 | | |
| Hoxa6 | P09092 | Gm26217-201 | ENSMUST00000175212 | 84 nt | BASIC | -0.34 | □□□□□ -2.46 | | |
| Hoxa6 | P09092 | Gm23921-201 | ENSMUST00000175258 | 107 nt | BASIC | -0.34 | □□□□□ -2.46 | | |
| Hoxa6 | P09092 | Gm27993-201 | ENSMUST00000184362 | 85 nt | BASIC | -0.34 | □□□□□ -2.46 | | |
| Hoxa6 | P09092 | Gm42795-201 | ENSMUST00000198847 | 76 nt | BASIC | -0.34 | □□□□□ -2.46 | | |
| Hoxa6 | P09092 | Mir1949-202 | ENSMUST00000199259 | 70 nt | BASIC | -0.34 | □□□□□ -2.46 | | |
| Hoxa6 | P09092 | Gm44327-201 | ENSMUST00000200068 | 117 nt | BASIC | -0.34 | □□□□□ -2.46 | | |
| Hoxa6 | P09092 | AC159896.1-201 | ENSMUST00000215264 | 215 nt | BASIC | -0.34 | □□□□□ -2.46 | | |
| Hoxa6 | P09092 | AC102369.1-201 | ENSMUST00000218415 | 373 nt | BASIC | -0.34 | □□□□□ -2.46 | | |
| Hoxa6 | P09092 | AC166358.7-201 | ENSMUST00000221132 | 108 nt | BASIC | -0.34 | □□□□□ -2.46 | | |
| Hoxa6 | P09092 | AC125543.5-201 | ENSMUST00000222799 | 108 nt | BASIC | -0.34 | □□□□□ -2.46 | | |
| Hoxa6 | P09092 | Gm23442-201 | ENSMUST00000082919 | 134 nt | BASIC | -0.34 | □□□□□ -2.46 | | |
| Hoxa6 | P09092 | Gm24453-201 | ENSMUST00000083346 | 76 nt | BASIC | -0.34 | □□□□□ -2.46 | | |
| Hoxa6 | P09092 | Gm22738-201 | ENSMUST00000083440 | 147 nt | BASIC | -0.34 | □□□□□ -2.46 | | |
| Hoxa6 | P09092 | Scgb1b24-201 | ENSMUST00000108087 | 279 nt | APPRIS P1 TSL 1 (best) BASIC | -0.35 | □□□□□ -2.47 | | |
| Hoxa6 | P09092 | Gm14293-201 | ENSMUST00000118528 | 577 nt | BASIC | -0.35 | □□□□□ -2.47 | | |
| Hoxa6 | P09092 | Tra2b-ps-201 | ENSMUST00000119906 | 168 nt | BASIC | -0.35 | □□□□□ -2.47 | | |
| Hoxa6 | P09092 | Gm23788-201 | ENSMUST00000122535 | 106 nt | BASIC | -0.35 | □□□□□ -2.47 | | |
| Hoxa6 | P09092 | Gm25828-201 | ENSMUST00000157087 | 95 nt | BASIC | -0.35 | □□□□□ -2.47 | | |
| Hoxa6 | P09092 | Gm24290-201 | ENSMUST00000157634 | 96 nt | BASIC | -0.35 | □□□□□ -2.47 | | |
| Hoxa6 | P09092 | Gm22387-201 | ENSMUST00000158191 | 131 nt | BASIC | -0.35 | □□□□□ -2.47 | | |
| Hoxa6 | P09092 | Gm24823-201 | ENSMUST00000175092 | 91 nt | BASIC | -0.35 | □□□□□ -2.47 | | |
| Hoxa6 | P09092 | Mir344-2-201 | ENSMUST00000175446 | 80 nt | BASIC | -0.35 | □□□□□ -2.47 | | |
| Hoxa6 | P09092 | Gm23571-201 | ENSMUST00000180073 | 127 nt | BASIC | -0.35 | □□□□□ -2.47 | | |
| Hoxa6 | P09092 | Gm28767-201 | ENSMUST00000188601 | 114 nt | BASIC | -0.35 | □□□□□ -2.47 | | |
| Hoxa6 | P09092 | Gm37313-201 | ENSMUST00000191673 | 290 nt | BASIC | -0.35 | □□□□□ -2.47 | | |
| Hoxa6 | P09092 | Gm44602-201 | ENSMUST00000205948 | 132 nt | BASIC | -0.35 | □□□□□ -2.47 | | |
| Hoxa6 | P09092 | Gm24150-201 | ENSMUST00000082759 | 104 nt | BASIC | -0.35 | □□□□□ -2.47 | | |
| Hoxa6 | P09092 | Gm26123-201 | ENSMUST00000083363 | 135 nt | BASIC | -0.35 | □□□□□ -2.47 | | |
| Hoxa6 | P09092 | Gm25102-201 | ENSMUST00000122479 | 112 nt | BASIC | -0.36 | □□□□□ -2.47 | | |
| Hoxa6 | P09092 | Gm24635-201 | ENSMUST00000122712 | 128 nt | BASIC | -0.36 | □□□□□ -2.47 | | |
| Hoxa6 | P09092 | Gm24894-201 | ENSMUST00000122744 | 118 nt | BASIC | -0.36 | □□□□□ -2.47 | | |
| Hoxa6 | P09092 | Gm25160-201 | ENSMUST00000158914 | 102 nt | BASIC | -0.36 | □□□□□ -2.47 | | |
| Hoxa6 | P09092 | Gm10548-202 | ENSMUST00000165672 | 272 nt | BASIC | -0.36 | □□□□□ -2.47 | | |
| Hoxa6 | P09092 | AC150901.1-201 | ENSMUST00000208407 | 145 nt | BASIC | -0.36 | □□□□□ -2.47 | | |
| Hoxa6 | P09092 | Gm26111-201 | ENSMUST00000083969 | 106 nt | BASIC | -0.36 | □□□□□ -2.47 | | |
| Hoxa6 | P09092 | Gm25538-201 | ENSMUST00000101943 | 107 nt | BASIC | -0.37 | □□□□□ -2.47 | | |
| Hoxa6 | P09092 | Gm11042-201 | ENSMUST00000110441 | 120 nt | APPRIS P1 TSL 5 BASIC | -0.37 | □□□□□ -2.47 | | |
| Hoxa6 | P09092 | Gm15030-201 | ENSMUST00000119804 | 484 nt | BASIC | -0.37 | □□□□□ -2.47 | | |
| Hoxa6 | P09092 | Gm25109-201 | ENSMUST00000122474 | 114 nt | BASIC | -0.37 | □□□□□ -2.47 | | |
| Hoxa6 | P09092 | Gm16356-201 | ENSMUST00000143300 | 169 nt | BASIC | -0.37 | □□□□□ -2.47 | | |
| Hoxa6 | P09092 | Gm23982-201 | ENSMUST00000157141 | 106 nt | BASIC | -0.37 | □□□□□ -2.47 | | |
| Hoxa6 | P09092 | Gm38050-201 | ENSMUST00000191904 | 238 nt | BASIC | -0.37 | □□□□□ -2.47 | | |
| Hoxa6 | P09092 | AC158981.3-202 | ENSMUST00000228906 | 523 nt | BASIC | -0.37 | □□□□□ -2.47 | | |
| Hoxa6 | P09092 | Gm25929-201 | ENSMUST00000082784 | 107 nt | BASIC | -0.37 | □□□□□ -2.47 | | |
| Hoxa6 | P09092 | Snord60-201 | ENSMUST00000082834 | 78 nt | BASIC | -0.37 | □□□□□ -2.47 | | |
| Hoxa6 | P09092 | AC160984.1-201 | ENSMUST00000225855 | 3154 nt | BASIC | -0.38 | □□□□□ -2.47 | | |
| Hoxa6 | P09092 | Gm25611-201 | ENSMUST00000104017 | 133 nt | BASIC | -0.38 | □□□□□ -2.47 | | |
| Hoxa6 | P09092 | Gm24233-201 | ENSMUST00000104317 | 122 nt | BASIC | -0.38 | □□□□□ -2.47 | | |
| Hoxa6 | P09092 | Gm6952-201 | ENSMUST00000118629 | 159 nt | BASIC | -0.38 | □□□□□ -2.47 | | |
| Hoxa6 | P09092 | Gm13065-201 | ENSMUST00000119178 | 141 nt | BASIC | -0.38 | □□□□□ -2.47 | | |
| Hoxa6 | P09092 | Gm14947-201 | ENSMUST00000133704 | 303 nt | BASIC | -0.38 | □□□□□ -2.47 | | |
| Hoxa6 | P09092 | Gm13569-201 | ENSMUST00000137221 | 574 nt | TSL 3 BASIC | -0.38 | □□□□□ -2.47 | | |
| Hoxa6 | P09092 | Gm24250-201 | ENSMUST00000157320 | 135 nt | BASIC | -0.38 | □□□□□ -2.47 | | |
| Hoxa6 | P09092 | Gm22118-201 | ENSMUST00000175593 | 171 nt | BASIC | -0.38 | □□□□□ -2.47 | | |
| Hoxa6 | P09092 | Gm38364-201 | ENSMUST00000191814 | 179 nt | BASIC | -0.38 | □□□□□ -2.47 | | |
| Hoxa6 | P09092 | Gm36929-201 | ENSMUST00000195152 | 166 nt | TSL 5 BASIC | -0.38 | □□□□□ -2.47 | | |