Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Gm22163-201ENSMUST00000158408 135 ntBASIC1.65□□□□□ -2.15
ShhQ62226 Gm22888-201ENSMUST00000158640 77 ntBASIC1.65□□□□□ -2.15
ShhQ62226 Gm23337-201ENSMUST00000158959 118 ntBASIC1.65□□□□□ -2.15
ShhQ62226 Mir9-3-201ENSMUST00000175497 90 ntBASIC1.65□□□□□ -2.15
ShhQ62226 Gm21885-201ENSMUST00000178891 327 ntBASIC1.65□□□□□ -2.15
ShhQ62226 Gm42988-201ENSMUST00000198116 225 ntBASIC1.65□□□□□ -2.15
ShhQ62226 Gm45544-201ENSMUST00000211130 88 ntBASIC1.65□□□□□ -2.15
ShhQ62226 AC126691.1-201ENSMUST00000226534 202 ntBASIC1.65□□□□□ -2.15
ShhQ62226 Gm24165-201ENSMUST00000082718 128 ntBASIC1.65□□□□□ -2.15
ShhQ62226 Gm23100-201ENSMUST00000083455 141 ntBASIC1.65□□□□□ -2.15
ShhQ62226 Gm25878-201ENSMUST00000104327 93 ntBASIC1.64□□□□□ -2.15
ShhQ62226 Gm23772-201ENSMUST00000104433 102 ntBASIC1.64□□□□□ -2.15
ShhQ62226 Gm14709-201ENSMUST00000121225 304 ntBASIC1.64□□□□□ -2.15
ShhQ62226 Gm17020-201ENSMUST00000172274 274 ntBASIC1.64□□□□□ -2.15
ShhQ62226 Rnu6-ps2-201ENSMUST00000178059 107 ntBASIC1.64□□□□□ -2.15
ShhQ62226 Gm27517-201ENSMUST00000184347 236 ntBASIC1.64□□□□□ -2.15
ShhQ62226 Igkv13-54-1-201ENSMUST00000196495 303 ntBASIC1.64□□□□□ -2.15
ShhQ62226 Mir7021-201ENSMUST00000197026 63 ntBASIC1.64□□□□□ -2.15
ShhQ62226 Olfr1319-ps1-201ENSMUST00000208550 274 ntBASIC1.64□□□□□ -2.15
ShhQ62226 AC168880.2-201ENSMUST00000224488 201 ntBASIC1.64□□□□□ -2.15
ShhQ62226 Mir221-201ENSMUST00000083488 95 ntBASIC1.64□□□□□ -2.15
ShhQ62226 Mir448-201ENSMUST00000083516 112 ntBASIC1.64□□□□□ -2.15
ShhQ62226 Olfr1218-202ENSMUST00000213609 3760 ntAPPRIS P1 TSL 5 BASIC1.64□□□□□ -2.15
ShhQ62226 Olfr805-204ENSMUST00000217219 3314 ntAPPRIS P1 TSL 5 BASIC1.64□□□□□ -2.15
ShhQ62226 Vmn1r29-202ENSMUST00000226971 4714 ntAPPRIS P1 BASIC1.64□□□□□ -2.15
ShhQ62226 Arhgap5-201ENSMUST00000110725 5197 ntAPPRIS P1 TSL 1 (best) BASIC1.63□□□□□ -2.15
ShhQ62226 Traj26-201ENSMUST00000103715 60 ntAPPRIS P1 BASIC1.63□□□□□ -2.15
ShhQ62226 Gm23996-201ENSMUST00000158062 131 ntBASIC1.63□□□□□ -2.15
ShhQ62226 Gm22139-201ENSMUST00000158747 105 ntBASIC1.63□□□□□ -2.15
ShhQ62226 Mir3471-1-201ENSMUST00000175139 131 ntBASIC1.63□□□□□ -2.15
ShhQ62226 Ighv1-23-201ENSMUST00000194625 351 ntAPPRIS P1 BASIC1.63□□□□□ -2.15
ShhQ62226 Gm18213-201ENSMUST00000207850 178 ntBASIC1.63□□□□□ -2.15
ShhQ62226 Gm22738-201ENSMUST00000083440 147 ntBASIC1.63□□□□□ -2.15
ShhQ62226 Gm25409-201ENSMUST00000083764 131 ntBASIC1.63□□□□□ -2.15
ShhQ62226 Vmn2r69-201ENSMUST00000171213 2553 ntAPPRIS P1 TSL 5 BASIC1.63□□□□□ -2.15
ShhQ62226 Olfr141-201ENSMUST00000216117 2935 ntAPPRIS P1 TSL 5 BASIC1.62□□□□□ -2.15
ShhQ62226 Gm25170-201ENSMUST00000104191 129 ntBASIC1.62□□□□□ -2.15
ShhQ62226 Gm25044-201ENSMUST00000158603 104 ntBASIC1.62□□□□□ -2.15
ShhQ62226 Gm24345-201ENSMUST00000158706 124 ntBASIC1.62□□□□□ -2.15
ShhQ62226 Gm22665-201ENSMUST00000158720 275 ntBASIC1.62□□□□□ -2.15
ShhQ62226 Gm24656-201ENSMUST00000177548 132 ntBASIC1.62□□□□□ -2.15
ShhQ62226 Gm37778-201ENSMUST00000191732 190 ntBASIC1.62□□□□□ -2.15
ShhQ62226 AC117232.1-201ENSMUST00000197964 119 ntBASIC1.62□□□□□ -2.15
ShhQ62226 Gm18502-201ENSMUST00000218679 199 ntBASIC1.62□□□□□ -2.15
ShhQ62226 Mir201-201ENSMUST00000083470 66 ntBASIC1.62□□□□□ -2.15
ShhQ62226 Mir148b-201ENSMUST00000083626 97 ntBASIC1.62□□□□□ -2.15
ShhQ62226 Olfr1013-202ENSMUST00000216397 4925 ntAPPRIS P1 TSL 2 BASIC1.62□□□□□ -2.15
ShhQ62226 Gm24263-201ENSMUST00000104059 107 ntBASIC1.61□□□□□ -2.15
ShhQ62226 Gm25496-201ENSMUST00000104430 120 ntBASIC1.61□□□□□ -2.15
ShhQ62226 Gm14671-201ENSMUST00000121790 262 ntBASIC1.61□□□□□ -2.15
ShhQ62226 Gm25279-201ENSMUST00000122608 133 ntBASIC1.61□□□□□ -2.15
ShhQ62226 Gm15611-201ENSMUST00000146928 406 ntTSL 1 (best) BASIC1.61□□□□□ -2.15
ShhQ62226 Gm25976-201ENSMUST00000158695 130 ntBASIC1.61□□□□□ -2.15
ShhQ62226 Gm27934-201ENSMUST00000158795 63 ntBASIC1.61□□□□□ -2.15
ShhQ62226 Gm26073-201ENSMUST00000179906 127 ntBASIC1.61□□□□□ -2.15
ShhQ62226 Gm42855-201ENSMUST00000197388 253 ntBASIC1.61□□□□□ -2.15
ShhQ62226 Gm45754-201ENSMUST00000212380 279 ntBASIC1.61□□□□□ -2.15
ShhQ62226 AL627387.1-201ENSMUST00000226063 250 ntBASIC1.61□□□□□ -2.15
ShhQ62226 AC151902.2-201ENSMUST00000226419 301 ntBASIC1.61□□□□□ -2.15
ShhQ62226 8030445P17Rik-201ENSMUST00000192614 2741 ntBASIC1.61□□□□□ -2.15
ShhQ62226 Vmn1r78-203ENSMUST00000228664 8100 ntAPPRIS P1 BASIC1.61□□□□□ -2.15
ShhQ62226 Olfr820-202ENSMUST00000214917 4701 ntAPPRIS P1 TSL 5 BASIC1.61□□□□□ -2.15
ShhQ62226 G2e3-203ENSMUST00000121521 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC1.6□□□□□ -2.15
ShhQ62226 Olfr921-203ENSMUST00000217114 4120 ntAPPRIS P1 TSL 2 BASIC1.6□□□□□ -2.15
ShhQ62226 Mir880-201ENSMUST00000104809 78 ntBASIC1.6□□□□□ -2.15
ShhQ62226 Gm11856-201ENSMUST00000118712 276 ntBASIC1.6□□□□□ -2.15
ShhQ62226 Gm12432-201ENSMUST00000119540 186 ntBASIC1.6□□□□□ -2.15
ShhQ62226 Gm11334-201ENSMUST00000121969 156 ntBASIC1.6□□□□□ -2.15
ShhQ62226 n-R5s73-201ENSMUST00000122508 107 ntBASIC1.6□□□□□ -2.15
ShhQ62226 Gm22790-201ENSMUST00000157229 129 ntBASIC1.6□□□□□ -2.15
ShhQ62226 Gm26049-201ENSMUST00000157313 108 ntBASIC1.6□□□□□ -2.15
ShhQ62226 Gm24000-201ENSMUST00000158063 89 ntBASIC1.6□□□□□ -2.15
ShhQ62226 Gm25831-201ENSMUST00000158924 163 ntBASIC1.6□□□□□ -2.15
ShhQ62226 Gm29613-201ENSMUST00000185846 313 ntBASIC1.6□□□□□ -2.15
ShhQ62226 Gm29544-201ENSMUST00000188860 313 ntBASIC1.6□□□□□ -2.15
ShhQ62226 Gm28808-201ENSMUST00000190978 313 ntBASIC1.6□□□□□ -2.15
ShhQ62226 1700016B01Rik-201ENSMUST00000197688 270 ntTSL 1 (best) BASIC1.6□□□□□ -2.15
ShhQ62226 Mir6962-201ENSMUST00000199512 63 ntBASIC1.6□□□□□ -2.15
ShhQ62226 Gm25855-201ENSMUST00000082787 72 ntBASIC1.6□□□□□ -2.15
ShhQ62226 Gm25136-201ENSMUST00000083253 115 ntBASIC1.6□□□□□ -2.15
ShhQ62226 Gm23347-201ENSMUST00000083823 82 ntBASIC1.6□□□□□ -2.15
ShhQ62226 Gm24232-201ENSMUST00000104314 132 ntBASIC1.59□□□□□ -2.15
ShhQ62226 Gm22373-201ENSMUST00000104584 89 ntBASIC1.59□□□□□ -2.15
ShhQ62226 Gm25428-201ENSMUST00000157608 114 ntBASIC1.59□□□□□ -2.15
ShhQ62226 Gm22946-201ENSMUST00000158558 82 ntBASIC1.59□□□□□ -2.15
ShhQ62226 Trav5d-3-201ENSMUST00000170041 270 ntBASIC1.59□□□□□ -2.15
ShhQ62226 Gm25750-201ENSMUST00000175483 112 ntBASIC1.59□□□□□ -2.15
ShhQ62226 Sprr2c-ps-201ENSMUST00000195581 301 ntBASIC1.59□□□□□ -2.15
ShhQ62226 Trav5-2-201ENSMUST00000199855 280 ntBASIC1.59□□□□□ -2.15
ShhQ62226 Gm44976-201ENSMUST00000205543 261 ntBASIC1.59□□□□□ -2.15
ShhQ62226 Olfr1007-ps1-201ENSMUST00000217468 138 ntBASIC1.59□□□□□ -2.15
ShhQ62226 Gm22283-201ENSMUST00000082556 161 ntBASIC1.59□□□□□ -2.15
ShhQ62226 Gm22884-201ENSMUST00000083127 140 ntBASIC1.59□□□□□ -2.15
ShhQ62226 Mir489-201ENSMUST00000093599 107 ntBASIC1.59□□□□□ -2.15
ShhQ62226 Olfr1253-204ENSMUST00000215988 6332 ntAPPRIS P1 TSL 5 BASIC1.58□□□□□ -2.16
ShhQ62226 Gm23320-201ENSMUST00000104462 127 ntBASIC1.58□□□□□ -2.16
ShhQ62226 Gm25980-201ENSMUST00000157176 218 ntBASIC1.58□□□□□ -2.16
ShhQ62226 Gm22387-201ENSMUST00000158191 131 ntBASIC1.58□□□□□ -2.16
ShhQ62226 Gm23350-201ENSMUST00000158429 103 ntBASIC1.58□□□□□ -2.16
ShhQ62226 Gm24222-201ENSMUST00000158834 93 ntBASIC1.58□□□□□ -2.16
Retrieved 100 of 76,532 protein–RNA pairs in 88.1 ms