Protein–RNA interactions for Protein: Q9D706

Rpap3, RNA polymerase II-associated protein 3, mousemouse

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rpap3Q9D706 Pacsin1-202ENSMUST00000097360 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Rpap3Q9D706 Tmie-201ENSMUST00000050958 2802 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Rpap3Q9D706 Krtap1-4-201ENSMUST00000100479 593 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
Rpap3Q9D706 Gm27742-201ENSMUST00000184667 60 ntBASIC18.68■□□□□ 0.58
Rpap3Q9D706 Gm17807-201ENSMUST00000186869 298 ntBASIC18.68■□□□□ 0.58
Rpap3Q9D706 BC048679-203ENSMUST00000207871 567 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Rpap3Q9D706 Angptl8-201ENSMUST00000058777 865 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Rpap3Q9D706 Prima1-201ENSMUST00000074416 909 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Rpap3Q9D706 Bnip2-203ENSMUST00000117450 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Rpap3Q9D706 Tarbp1-201ENSMUST00000170518 6383 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
Rpap3Q9D706 Fdxr-201ENSMUST00000021078 1948 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Rpap3Q9D706 Ccdc126-201ENSMUST00000055559 2351 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Rpap3Q9D706 4930474H06Rik-201ENSMUST00000132822 1590 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Rpap3Q9D706 Surf4-201ENSMUST00000015011 3281 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Rpap3Q9D706 Atrnl1-201ENSMUST00000077282 6581 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Rpap3Q9D706 Gm43808-201ENSMUST00000202534 2065 ntBASIC18.67■□□□□ 0.58
Rpap3Q9D706 Calb2-201ENSMUST00000003754 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Rpap3Q9D706 Arhgef25-212ENSMUST00000222006 1896 ntTSL 5 BASIC18.67■□□□□ 0.58
Rpap3Q9D706 Iqcd-202ENSMUST00000094391 1673 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Rpap3Q9D706 Arhgap21-201ENSMUST00000114594 7351 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
Rpap3Q9D706 Thumpd3-201ENSMUST00000032398 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Rpap3Q9D706 Tpm2-203ENSMUST00000107914 1164 ntAPPRIS ALT1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Rpap3Q9D706 Fbxo6-208ENSMUST00000168503 1240 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
Rpap3Q9D706 Gm19553-201ENSMUST00000175723 494 ntTSL 5 BASIC18.67■□□□□ 0.58
Rpap3Q9D706 Sftpb-201ENSMUST00000070437 1131 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
Rpap3Q9D706 Exosc5-201ENSMUST00000079634 1020 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Rpap3Q9D706 Chst1-201ENSMUST00000065797 2680 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Rpap3Q9D706 Abcg5-202ENSMUST00000163375 1613 ntTSL 5 BASIC18.67■□□□□ 0.58
Rpap3Q9D706 Mink1-201ENSMUST00000072237 4994 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
Rpap3Q9D706 Map7-201ENSMUST00000020173 4252 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Rpap3Q9D706 4932702P03Rik-201ENSMUST00000138447 1482 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Rpap3Q9D706 Gm10489-201ENSMUST00000180511 1466 ntTSL 2 BASIC18.66■□□□□ 0.58
Rpap3Q9D706 Retreg1-201ENSMUST00000022881 3248 ntTSL 5 BASIC18.66■□□□□ 0.58
Rpap3Q9D706 Dpy30-201ENSMUST00000112571 790 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
Rpap3Q9D706 Pld6-202ENSMUST00000125307 948 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Rpap3Q9D706 Blvrb-204ENSMUST00000133750 509 ntTSL 2 BASIC18.66■□□□□ 0.58
Rpap3Q9D706 Gm15890-201ENSMUST00000161024 770 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Rpap3Q9D706 Ighv6-1-201ENSMUST00000193612 343 ntBASIC18.66■□□□□ 0.58
Rpap3Q9D706 F420014N23Rik-202ENSMUST00000219079 659 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Rpap3Q9D706 Clasp2-204ENSMUST00000213663 2727 ntTSL 5 BASIC18.66■□□□□ 0.58
Rpap3Q9D706 Gm26892-201ENSMUST00000181695 1636 ntTSL 5 BASIC18.66■□□□□ 0.58
Rpap3Q9D706 Spsb4-201ENSMUST00000055433 2720 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Rpap3Q9D706 Snx16-202ENSMUST00000099223 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Rpap3Q9D706 Zfp119b-201ENSMUST00000056147 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Rpap3Q9D706 Bend6-202ENSMUST00000115161 2231 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Rpap3Q9D706 Dlgap2-203ENSMUST00000133298 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Rpap3Q9D706 Sytl3-204ENSMUST00000159880 1296 ntTSL 5 BASIC18.65■□□□□ 0.58
Rpap3Q9D706 Znhit2-201ENSMUST00000162726 1281 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
Rpap3Q9D706 Gm27357-201ENSMUST00000183754 135 ntBASIC18.65■□□□□ 0.58
Rpap3Q9D706 Gm44450-201ENSMUST00000199528 114 ntBASIC18.65■□□□□ 0.58
Rpap3Q9D706 Krt10-202ENSMUST00000211768 557 ntTSL 3 BASIC18.65■□□□□ 0.58
Rpap3Q9D706 Sdhaf4-201ENSMUST00000027338 683 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Rpap3Q9D706 Rnf112-203ENSMUST00000102661 3118 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Rpap3Q9D706 Car9-201ENSMUST00000030183 2023 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Rpap3Q9D706 Ccdc6-203ENSMUST00000147545 5511 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
Rpap3Q9D706 Kcnj4-201ENSMUST00000057801 2148 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Rpap3Q9D706 Agap3-205ENSMUST00000199856 2685 ntTSL 5 BASIC18.65■□□□□ 0.58
Rpap3Q9D706 Ciz1-201ENSMUST00000048964 2771 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.58
Rpap3Q9D706 Asnsd1-201ENSMUST00000027264 2442 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Rpap3Q9D706 Spi1-201ENSMUST00000002180 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Rpap3Q9D706 Kcns3-201ENSMUST00000055673 2933 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Rpap3Q9D706 Gpat3-203ENSMUST00000112887 3059 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Rpap3Q9D706 Ciz1-205ENSMUST00000113338 2666 ntAPPRIS P3 TSL 5 BASIC18.64■□□□□ 0.57
Rpap3Q9D706 Otx2os1-206ENSMUST00000228153 787 ntBASIC18.64■□□□□ 0.57
Rpap3Q9D706 Upk3a-201ENSMUST00000023070 1106 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Rpap3Q9D706 Etfb-201ENSMUST00000004729 893 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Rpap3Q9D706 Lrrc14-204ENSMUST00000137649 2832 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Rpap3Q9D706 Myrip-201ENSMUST00000048121 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Rpap3Q9D706 Amigo2-201ENSMUST00000053106 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Rpap3Q9D706 Ager-201ENSMUST00000015596 1370 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
Rpap3Q9D706 AC122335.2-201ENSMUST00000213901 6181 ntBASIC18.64■□□□□ 0.57
Rpap3Q9D706 Gm13285-201ENSMUST00000179725 1462 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
Rpap3Q9D706 Zfp768-201ENSMUST00000060783 2356 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Rpap3Q9D706 Gm10461-201ENSMUST00000202073 4786 ntBASIC18.63■□□□□ 0.57
Rpap3Q9D706 Tdh-201ENSMUST00000022522 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Rpap3Q9D706 Zbtb24-202ENSMUST00000213797 2734 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Rpap3Q9D706 Il1rn-201ENSMUST00000114482 1986 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Rpap3Q9D706 Cdipt-201ENSMUST00000032920 1974 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Rpap3Q9D706 Rps27a-202ENSMUST00000102845 791 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Rpap3Q9D706 Gm13524-201ENSMUST00000125869 662 ntTSL 3 BASIC18.63■□□□□ 0.57
Rpap3Q9D706 Gm16075-201ENSMUST00000135873 361 ntTSL 3 BASIC18.63■□□□□ 0.57
Rpap3Q9D706 Gm12359-202ENSMUST00000141696 713 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Rpap3Q9D706 Gm12359-203ENSMUST00000153181 680 ntTSL 3 BASIC18.63■□□□□ 0.57
Rpap3Q9D706 Arl5b-206ENSMUST00000193836 481 ntTSL 2 BASIC18.63■□□□□ 0.57
Rpap3Q9D706 Gm18669-201ENSMUST00000216049 778 ntBASIC18.63■□□□□ 0.57
Rpap3Q9D706 AC159205.3-201ENSMUST00000224614 874 ntBASIC18.63■□□□□ 0.57
Rpap3Q9D706 Hist1h2ad-201ENSMUST00000090776 572 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
Rpap3Q9D706 Arid1a-202ENSMUST00000105897 8175 ntAPPRIS P2 TSL 5 BASIC18.63■□□□□ 0.57
Rpap3Q9D706 Igf2bp2-201ENSMUST00000100052 3899 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Rpap3Q9D706 Slc30a9-201ENSMUST00000113676 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Rpap3Q9D706 Cldn7-201ENSMUST00000018713 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Rpap3Q9D706 Cep57-208ENSMUST00000147115 2262 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Rpap3Q9D706 Ppt2-205ENSMUST00000169067 1392 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
Rpap3Q9D706 Plpbp-202ENSMUST00000098851 1368 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Rpap3Q9D706 Dbn1-202ENSMUST00000109921 2378 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Rpap3Q9D706 Pea15a-201ENSMUST00000013842 2501 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Rpap3Q9D706 Rsu1-201ENSMUST00000028059 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Rpap3Q9D706 Ube2k-201ENSMUST00000142407 4893 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Rpap3Q9D706 BC034090-204ENSMUST00000186156 4873 ntAPPRIS P5 TSL 5 BASIC18.63■□□□□ 0.57
Rpap3Q9D706 Wasf3-201ENSMUST00000016143 5196 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 22.7 ms