Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Zfp800-203ENSMUST00000115321 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Smc1aQ9CU62 Dgkz-201ENSMUST00000028667 3584 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
Smc1aQ9CU62 Pten-201ENSMUST00000013807 8292 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Smc1aQ9CU62 Mboat7-201ENSMUST00000038608 2878 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Smc1aQ9CU62 Sqor-201ENSMUST00000005953 1804 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Smc1aQ9CU62 Ank1-209ENSMUST00000121802 8218 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Smc1aQ9CU62 Nadk2-203ENSMUST00000100790 3665 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
Smc1aQ9CU62 Mdfic-202ENSMUST00000120512 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Smc1aQ9CU62 Cacna2d2-203ENSMUST00000164988 5542 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
Smc1aQ9CU62 4930579K19Rik-202ENSMUST00000190541 632 ntTSL 2 BASIC18.95■□□□□ 0.62
Smc1aQ9CU62 Uqcr11-201ENSMUST00000020372 445 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Smc1aQ9CU62 Npw-201ENSMUST00000095544 638 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Smc1aQ9CU62 Itm2c-203ENSMUST00000185569 1465 ntTSL 5 BASIC18.95■□□□□ 0.62
Smc1aQ9CU62 Faap20-201ENSMUST00000097747 1479 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Smc1aQ9CU62 Ube2j2-213ENSMUST00000166489 3339 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Smc1aQ9CU62 Map1s-201ENSMUST00000019405 3314 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Smc1aQ9CU62 Hist1h2bh-201ENSMUST00000224359 1679 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
Smc1aQ9CU62 Aldh7a1-206ENSMUST00000172734 1880 ntTSL 5 BASIC18.94■□□□□ 0.62
Smc1aQ9CU62 P2rx2-201ENSMUST00000058016 1895 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Smc1aQ9CU62 Vegfc-201ENSMUST00000033919 2449 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Smc1aQ9CU62 Bmp8a-202ENSMUST00000102641 1917 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
Smc1aQ9CU62 Whrn-207ENSMUST00000107393 4028 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Smc1aQ9CU62 Zfp697-202ENSMUST00000178372 4703 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
Smc1aQ9CU62 Whrn-203ENSMUST00000084510 4049 ntAPPRIS P4 TSL 1 (best) BASIC18.94■□□□□ 0.62
Smc1aQ9CU62 Zfp382-201ENSMUST00000098596 2117 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Smc1aQ9CU62 Mycn-201ENSMUST00000043396 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Smc1aQ9CU62 Ramp2-202ENSMUST00000122006 899 ntTSL 2 BASIC18.94■□□□□ 0.62
Smc1aQ9CU62 AC166341.7-201ENSMUST00000221698 126 ntBASIC18.94■□□□□ 0.62
Smc1aQ9CU62 Lrrc47-205ENSMUST00000169622 3468 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Smc1aQ9CU62 Alg5-201ENSMUST00000044567 1471 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Smc1aQ9CU62 Gm37519-201ENSMUST00000191687 2210 ntBASIC18.94■□□□□ 0.62
Smc1aQ9CU62 Cask-203ENSMUST00000115436 8260 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
Smc1aQ9CU62 Cnot9-201ENSMUST00000087215 3268 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Smc1aQ9CU62 Tmem51os1-202ENSMUST00000141769 2131 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Smc1aQ9CU62 Gm16201-202ENSMUST00000139218 2330 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Smc1aQ9CU62 Espnl-201ENSMUST00000088904 5445 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Smc1aQ9CU62 Fam171b-201ENSMUST00000051454 5614 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Smc1aQ9CU62 Slc35g2-201ENSMUST00000093792 1590 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
Smc1aQ9CU62 Hmbox1-203ENSMUST00000175744 1771 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Smc1aQ9CU62 Cadps2-212ENSMUST00000163871 4969 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
Smc1aQ9CU62 Igsf11-201ENSMUST00000023478 3443 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Smc1aQ9CU62 Dnaaf3-201ENSMUST00000094897 2224 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Smc1aQ9CU62 Tlk2-204ENSMUST00000106941 3699 ntAPPRIS ALT1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Smc1aQ9CU62 Stk39-201ENSMUST00000102715 3536 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Smc1aQ9CU62 E230001N04Rik-202ENSMUST00000181029 2091 ntBASIC18.93■□□□□ 0.62
Smc1aQ9CU62 Cenpa-205ENSMUST00000144742 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Smc1aQ9CU62 Tmem14c-201ENSMUST00000021790 914 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Smc1aQ9CU62 Ppm1j-201ENSMUST00000002298 1721 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Smc1aQ9CU62 Slit1-201ENSMUST00000025993 5045 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Smc1aQ9CU62 AL591207.1-203ENSMUST00000222401 1380 ntTSL 5 BASIC18.93■□□□□ 0.62
Smc1aQ9CU62 Atf7-209ENSMUST00000184485 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Smc1aQ9CU62 Diaph2-201ENSMUST00000037854 3742 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Smc1aQ9CU62 Bmt2-202ENSMUST00000203078 4462 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Smc1aQ9CU62 Tlcd1-204ENSMUST00000127587 1412 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
Smc1aQ9CU62 Hand1-201ENSMUST00000036917 1904 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Smc1aQ9CU62 Kif7-202ENSMUST00000178048 4524 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Smc1aQ9CU62 Gm42477-201ENSMUST00000202427 469 ntTSL 3 BASIC18.92■□□□□ 0.62
Smc1aQ9CU62 Metrn-201ENSMUST00000002344 987 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
Smc1aQ9CU62 Tpsg1-201ENSMUST00000024999 1186 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Smc1aQ9CU62 Dancr-204ENSMUST00000132389 2347 ntBASIC18.92■□□□□ 0.62
Smc1aQ9CU62 Fam53a-201ENSMUST00000045329 2346 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Smc1aQ9CU62 Fmnl2-202ENSMUST00000050719 3380 ntTSL 5 BASIC18.92■□□□□ 0.62
Smc1aQ9CU62 Ankrd13b-201ENSMUST00000037593 3105 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Smc1aQ9CU62 Xiap-203ENSMUST00000115094 6542 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
Smc1aQ9CU62 Umad1-202ENSMUST00000159335 2615 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Smc1aQ9CU62 Lmbr1-207ENSMUST00000200564 1598 ntTSL 5 BASIC18.92■□□□□ 0.62
Smc1aQ9CU62 Btbd10-203ENSMUST00000119278 2394 ntTSL 5 BASIC18.92■□□□□ 0.62
Smc1aQ9CU62 Gm37166-201ENSMUST00000195473 2474 ntBASIC18.92■□□□□ 0.62
Smc1aQ9CU62 Isca1-201ENSMUST00000057115 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Smc1aQ9CU62 Card10-203ENSMUST00000170584 3220 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
Smc1aQ9CU62 Mag-201ENSMUST00000040548 2419 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Smc1aQ9CU62 Rbpms-203ENSMUST00000053251 2466 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Smc1aQ9CU62 Zfp710-201ENSMUST00000049680 4721 ntAPPRIS P4 TSL 1 (best) BASIC18.91■□□□□ 0.62
Smc1aQ9CU62 4930405A21Rik-202ENSMUST00000139042 994 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Smc1aQ9CU62 Ccnd2-204ENSMUST00000201637 1006 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Smc1aQ9CU62 Chmp2a-203ENSMUST00000210587 930 ntAPPRIS P1 TSL 3 BASIC18.91■□□□□ 0.62
Smc1aQ9CU62 Mrpl21-201ENSMUST00000025743 802 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Smc1aQ9CU62 Arl2-201ENSMUST00000025893 1144 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Smc1aQ9CU62 Rpl21-202ENSMUST00000075453 899 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Smc1aQ9CU62 Ust-201ENSMUST00000061601 4228 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Smc1aQ9CU62 Dbndd2-201ENSMUST00000017878 1338 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
Smc1aQ9CU62 Trappc3-201ENSMUST00000030660 1336 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Smc1aQ9CU62 Rbm12b1-202ENSMUST00000069128 3069 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Smc1aQ9CU62 D16Ertd472e-203ENSMUST00000114220 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Smc1aQ9CU62 Tubgcp4-203ENSMUST00000110658 4250 ntAPPRIS ALT1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Smc1aQ9CU62 Gprin1-202ENSMUST00000135343 4248 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Smc1aQ9CU62 Fbrsl1-202ENSMUST00000069483 4720 ntAPPRIS P2 TSL 5 BASIC18.9■□□□□ 0.62
Smc1aQ9CU62 4930447C04Rik-202ENSMUST00000110489 1988 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
Smc1aQ9CU62 Dhh-201ENSMUST00000023737 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Smc1aQ9CU62 Gm26548-201ENSMUST00000181165 2029 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Smc1aQ9CU62 Zmym3-206ENSMUST00000120107 5882 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
Smc1aQ9CU62 Ablim1-204ENSMUST00000111524 1251 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Smc1aQ9CU62 Ccdc58-202ENSMUST00000163352 970 ntTSL 3 BASIC18.9■□□□□ 0.62
Smc1aQ9CU62 Ccdc58-203ENSMUST00000164916 1096 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Smc1aQ9CU62 Spata25-201ENSMUST00000017911 786 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Smc1aQ9CU62 Gm21362-201ENSMUST00000194272 928 ntBASIC18.9■□□□□ 0.62
Smc1aQ9CU62 AC159205.6-201ENSMUST00000224935 887 ntBASIC18.9■□□□□ 0.62
Smc1aQ9CU62 Banf1-201ENSMUST00000025762 735 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Smc1aQ9CU62 Atp5l-201ENSMUST00000043675 544 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Smc1aQ9CU62 Pdcd2-201ENSMUST00000054450 1120 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Retrieved 100 of 76,532 protein–RNA pairs in 11.5 ms