Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Npm1-201ENSMUST00000075641 1633 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Usp40Q8BWR4 Gm9991-201ENSMUST00000070048 1207 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
Usp40Q8BWR4 Ap1s1-201ENSMUST00000111080 1353 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Usp40Q8BWR4 Zbtb32-202ENSMUST00000108151 1775 ntAPPRIS P1 TSL 5 BASIC23.24■■□□□ 1.31
Usp40Q8BWR4 4933434E20Rik-209ENSMUST00000162114 1411 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
Usp40Q8BWR4 Cdipt-201ENSMUST00000032920 1974 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Usp40Q8BWR4 Tmem132b-201ENSMUST00000031446 7995 ntAPPRIS P1 TSL 5 BASIC23.23■■□□□ 1.31
Usp40Q8BWR4 Mprip-203ENSMUST00000108751 4021 ntAPPRIS ALT2 TSL 1 (best) BASIC23.23■■□□□ 1.31
Usp40Q8BWR4 Nxn-201ENSMUST00000021204 2755 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Usp40Q8BWR4 Prkcz-203ENSMUST00000105624 694 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
Usp40Q8BWR4 Rnf141-201ENSMUST00000106682 1101 ntAPPRIS P1 TSL 3 BASIC23.23■■□□□ 1.31
Usp40Q8BWR4 Ifi27l2a-201ENSMUST00000055071 463 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Usp40Q8BWR4 Trak1-209ENSMUST00000210798 5363 ntAPPRIS ALT2 TSL 1 (best) BASIC23.23■■□□□ 1.31
Usp40Q8BWR4 Med9-201ENSMUST00000081980 1920 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Usp40Q8BWR4 Tfeb-203ENSMUST00000113284 1974 ntTSL 5 BASIC23.23■■□□□ 1.31
Usp40Q8BWR4 Spi1-201ENSMUST00000002180 2034 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Usp40Q8BWR4 Fiz1-203ENSMUST00000167804 2637 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Usp40Q8BWR4 Nus1-201ENSMUST00000023830 4605 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Usp40Q8BWR4 Maml1-201ENSMUST00000059458 5528 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Usp40Q8BWR4 Ntrk1-201ENSMUST00000029712 2588 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Usp40Q8BWR4 Fam104a-201ENSMUST00000120194 2619 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Usp40Q8BWR4 Map4k5-203ENSMUST00000110570 4498 ntAPPRIS P5 TSL 5 BASIC23.22■■□□□ 1.31
Usp40Q8BWR4 Tulp3-205ENSMUST00000157005 1053 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
Usp40Q8BWR4 Bex3-204ENSMUST00000178632 933 ntAPPRIS P3 TSL 2 BASIC23.22■■□□□ 1.31
Usp40Q8BWR4 1810026B05Rik-205ENSMUST00000184855 409 ntTSL 3 BASIC23.22■■□□□ 1.31
Usp40Q8BWR4 2010010A06Rik-202ENSMUST00000186356 694 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
Usp40Q8BWR4 AC133598.3-202ENSMUST00000224219 531 ntBASIC23.22■■□□□ 1.31
Usp40Q8BWR4 Srrd-201ENSMUST00000031289 1110 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Usp40Q8BWR4 Ppib-201ENSMUST00000034947 892 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Usp40Q8BWR4 Gm9857-201ENSMUST00000050914 393 ntAPPRIS P1 BASIC23.22■■□□□ 1.31
Usp40Q8BWR4 Sult2b1-201ENSMUST00000075571 1193 ntAPPRIS P2 TSL 1 (best) BASIC23.22■■□□□ 1.31
Usp40Q8BWR4 Fam159b-201ENSMUST00000043061 1310 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Usp40Q8BWR4 Crhr2-203ENSMUST00000114374 1440 ntAPPRIS ALT1 TSL 5 BASIC23.22■■□□□ 1.31
Usp40Q8BWR4 Zfp264-201ENSMUST00000208656 1563 ntBASIC23.22■■□□□ 1.31
Usp40Q8BWR4 Gm37519-201ENSMUST00000191687 2210 ntBASIC23.21■■□□□ 1.31
Usp40Q8BWR4 Map6-206ENSMUST00000208605 2275 ntAPPRIS ALT2 TSL 1 (best) BASIC23.21■■□□□ 1.31
Usp40Q8BWR4 Por-201ENSMUST00000005651 2636 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Usp40Q8BWR4 Ubtf-204ENSMUST00000107117 3258 ntAPPRIS ALT2 TSL 5 BASIC23.21■■□□□ 1.31
Usp40Q8BWR4 Pemt-203ENSMUST00000102693 961 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
Usp40Q8BWR4 2310009B15Rik-201ENSMUST00000112025 565 ntAPPRIS P1 TSL 2 BASIC23.21■■□□□ 1.31
Usp40Q8BWR4 Gm19345-201ENSMUST00000172815 993 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Usp40Q8BWR4 Gm40457-201ENSMUST00000205319 1174 ntTSL 5 BASIC23.21■■□□□ 1.31
Usp40Q8BWR4 Npw-202ENSMUST00000213213 531 ntAPPRIS P2 TSL 1 (best) BASIC23.21■■□□□ 1.31
Usp40Q8BWR4 Pnmt-201ENSMUST00000041301 1154 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Usp40Q8BWR4 Birc2-201ENSMUST00000054878 378 ntBASIC23.21■■□□□ 1.31
Usp40Q8BWR4 9430097D07Rik-201ENSMUST00000100190 1501 ntAPPRIS P1 BASIC23.21■■□□□ 1.31
Usp40Q8BWR4 Tsc22d1-201ENSMUST00000022587 1762 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Usp40Q8BWR4 Tubg1-201ENSMUST00000043680 1802 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Usp40Q8BWR4 Isl2-201ENSMUST00000034869 1854 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Usp40Q8BWR4 A130014A01Rik-201ENSMUST00000183021 2323 ntBASIC23.21■■□□□ 1.31
Usp40Q8BWR4 Slc16a7-205ENSMUST00000210780 2562 ntAPPRIS P1 TSL 5 BASIC23.21■■□□□ 1.31
Usp40Q8BWR4 Ciz1-201ENSMUST00000048964 2771 ntAPPRIS P3 TSL 1 (best) BASIC23.2■■□□□ 1.3
Usp40Q8BWR4 Il1rn-201ENSMUST00000114482 1986 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Usp40Q8BWR4 Usb1-201ENSMUST00000034245 1758 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Usp40Q8BWR4 Rnf181-203ENSMUST00000114095 869 ntTSL 3 BASIC23.2■■□□□ 1.3
Usp40Q8BWR4 Gm12895-201ENSMUST00000122214 226 ntBASIC23.2■■□□□ 1.3
Usp40Q8BWR4 Ctsg-201ENSMUST00000015583 1002 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Usp40Q8BWR4 8030462N17Rik-201ENSMUST00000074653 3418 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Usp40Q8BWR4 Pi4k2b-201ENSMUST00000031081 3139 ntAPPRIS P3 TSL 1 (best) BASIC23.2■■□□□ 1.3
Usp40Q8BWR4 Igsf8-201ENSMUST00000039506 2278 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Usp40Q8BWR4 Slc23a4-205ENSMUST00000201355 2003 ntAPPRIS P1 TSL 5 BASIC23.2■■□□□ 1.3
Usp40Q8BWR4 Gm45203-201ENSMUST00000206384 1831 ntBASIC23.19■■□□□ 1.3
Usp40Q8BWR4 Galnt1-206ENSMUST00000170243 4108 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Usp40Q8BWR4 Mrpl49-201ENSMUST00000007482 1722 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Usp40Q8BWR4 Rgmb-201ENSMUST00000170578 2633 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Usp40Q8BWR4 C130026I21Rik-201ENSMUST00000064341 1561 ntAPPRIS P3 TSL 1 (best) BASIC23.19■■□□□ 1.3
Usp40Q8BWR4 Kmt2b-202ENSMUST00000108154 8454 ntAPPRIS P2 TSL 1 (best) BASIC23.19■■□□□ 1.3
Usp40Q8BWR4 Nxnl1-201ENSMUST00000048243 2285 ntAPPRIS P1 TSL 2 BASIC23.19■■□□□ 1.3
Usp40Q8BWR4 Gtf3c2-202ENSMUST00000200871 318 ntTSL 3 BASIC23.19■■□□□ 1.3
Usp40Q8BWR4 Kcns3-201ENSMUST00000055673 2933 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Usp40Q8BWR4 Cnpy1-202ENSMUST00000118882 1984 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
Usp40Q8BWR4 Pacsin1-204ENSMUST00000114873 1857 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Usp40Q8BWR4 Celf3-208ENSMUST00000198316 2505 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
Usp40Q8BWR4 B4galt3-205ENSMUST00000126699 1758 ntTSL 5 BASIC23.19■■□□□ 1.3
Usp40Q8BWR4 Stxbp5l-202ENSMUST00000114775 1691 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
Usp40Q8BWR4 Gne-202ENSMUST00000102936 2920 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Usp40Q8BWR4 Cep57-208ENSMUST00000147115 2262 ntAPPRIS ALT2 TSL 1 (best) BASIC23.19■■□□□ 1.3
Usp40Q8BWR4 Epha10-201ENSMUST00000059343 2544 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Usp40Q8BWR4 Snx16-202ENSMUST00000099223 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
Usp40Q8BWR4 Sult2b1-204ENSMUST00000209739 1858 ntAPPRIS ALT2 TSL 5 BASIC23.18■■□□□ 1.3
Usp40Q8BWR4 Plekhh1-201ENSMUST00000039928 6439 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Usp40Q8BWR4 Psma3-204ENSMUST00000160864 859 ntTSL 5 BASIC23.18■■□□□ 1.3
Usp40Q8BWR4 Gm26871-202ENSMUST00000180774 695 ntTSL 2 BASIC23.18■■□□□ 1.3
Usp40Q8BWR4 Gm38119-201ENSMUST00000192027 755 ntAPPRIS P1 TSL 5 BASIC23.18■■□□□ 1.3
Usp40Q8BWR4 Hikeshi-207ENSMUST00000207309 835 ntTSL 5 BASIC23.18■■□□□ 1.3
Usp40Q8BWR4 Gm44930-202ENSMUST00000208733 689 ntTSL 5 BASIC23.18■■□□□ 1.3
Usp40Q8BWR4 Hist1h1a-201ENSMUST00000055770 741 ntAPPRIS P1 BASIC23.18■■□□□ 1.3
Usp40Q8BWR4 A730056A06Rik-201ENSMUST00000181299 2689 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
Usp40Q8BWR4 Rnf112-203ENSMUST00000102661 3118 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Usp40Q8BWR4 Fhl3-201ENSMUST00000038684 1664 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
Usp40Q8BWR4 1700025L06Rik-203ENSMUST00000211477 1623 ntTSL 5 BASIC23.18■■□□□ 1.3
Usp40Q8BWR4 Pea15a-201ENSMUST00000013842 2501 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Usp40Q8BWR4 Ttc19-201ENSMUST00000050646 3410 ntAPPRIS P3 TSL 1 (best) BASIC23.18■■□□□ 1.3
Usp40Q8BWR4 Zpbp2-203ENSMUST00000107509 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
Usp40Q8BWR4 Myo16-204ENSMUST00000208309 2462 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
Usp40Q8BWR4 Bmt2-201ENSMUST00000045235 4143 ntAPPRIS P2 TSL 1 (best) BASIC23.18■■□□□ 1.3
Usp40Q8BWR4 Tdh-201ENSMUST00000022522 1881 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
Usp40Q8BWR4 Klf16-201ENSMUST00000038558 2674 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
Usp40Q8BWR4 Tm6sf2-201ENSMUST00000049197 1418 ntAPPRIS P3 TSL 1 (best) BASIC23.17■■□□□ 1.3
Usp40Q8BWR4 Nmnat3-201ENSMUST00000112935 2166 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
Retrieved 100 of 76,532 protein–RNA pairs in 36.1 ms