Protein–RNA interactions for Protein: Q8BJF9

Chmp2b, Charged multivesicular body protein 2b, mousemouse

Predictions only

Length 213 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp2bQ8BJF9 Tra2a-204ENSMUST00000204189 1777 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Chmp2bQ8BJF9 Acads-201ENSMUST00000031524 1870 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Chmp2bQ8BJF9 Mief1-203ENSMUST00000228788 5352 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
Chmp2bQ8BJF9 Btbd11-203ENSMUST00000105307 5788 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
Chmp2bQ8BJF9 Abcd4-201ENSMUST00000021666 2309 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Chmp2bQ8BJF9 Aftph-201ENSMUST00000035350 3998 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
Chmp2bQ8BJF9 Cask-201ENSMUST00000033321 4057 ntTSL 5 BASIC17.37■□□□□ 0.37
Chmp2bQ8BJF9 Gm28756-202ENSMUST00000209405 2461 ntTSL 5 BASIC17.37■□□□□ 0.37
Chmp2bQ8BJF9 Gorasp2-203ENSMUST00000112205 1196 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Chmp2bQ8BJF9 Gm13158-201ENSMUST00000122007 736 ntBASIC17.37■□□□□ 0.37
Chmp2bQ8BJF9 Gm42545-201ENSMUST00000202755 922 ntBASIC17.37■□□□□ 0.37
Chmp2bQ8BJF9 Trappc6a-201ENSMUST00000002112 785 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Chmp2bQ8BJF9 Gm10065-201ENSMUST00000076238 345 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
Chmp2bQ8BJF9 Ccnl1-201ENSMUST00000029416 2169 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Chmp2bQ8BJF9 Hbs1l-203ENSMUST00000092674 2625 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Chmp2bQ8BJF9 Kcnq2-201ENSMUST00000016491 3067 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Chmp2bQ8BJF9 Unc13b-203ENSMUST00000107953 5034 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
Chmp2bQ8BJF9 Lrg1-201ENSMUST00000041357 1351 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Chmp2bQ8BJF9 Cep104-201ENSMUST00000047497 5151 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Chmp2bQ8BJF9 Slc25a23-201ENSMUST00000040280 3362 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Chmp2bQ8BJF9 Rhot1-201ENSMUST00000017831 3029 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Chmp2bQ8BJF9 Ptprs-201ENSMUST00000067538 6855 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Chmp2bQ8BJF9 Anapc2-201ENSMUST00000028341 3004 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Chmp2bQ8BJF9 Bex3-202ENSMUST00000113112 826 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Chmp2bQ8BJF9 4930554G22Rik-201ENSMUST00000196102 686 ntBASIC17.36■□□□□ 0.37
Chmp2bQ8BJF9 AC164629.5-201ENSMUST00000220387 632 ntBASIC17.36■□□□□ 0.37
Chmp2bQ8BJF9 Gm18025-201ENSMUST00000221733 862 ntBASIC17.36■□□□□ 0.37
Chmp2bQ8BJF9 Cox8a-201ENSMUST00000039758 545 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Chmp2bQ8BJF9 Hist1h2ap-201ENSMUST00000081342 482 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
Chmp2bQ8BJF9 Gm20628-201ENSMUST00000177363 3215 ntBASIC17.36■□□□□ 0.37
Chmp2bQ8BJF9 Mettl4-ps1-202ENSMUST00000130218 1323 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Chmp2bQ8BJF9 Nanp-201ENSMUST00000066640 1394 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Chmp2bQ8BJF9 Opn4-202ENSMUST00000168444 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Chmp2bQ8BJF9 Atxn7-202ENSMUST00000223714 2954 ntAPPRIS ALT2 BASIC17.36■□□□□ 0.37
Chmp2bQ8BJF9 Klf5-201ENSMUST00000005279 3352 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Chmp2bQ8BJF9 Matr3-214ENSMUST00000190029 2845 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
Chmp2bQ8BJF9 Gpr137b-201ENSMUST00000021738 2971 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Chmp2bQ8BJF9 Fez2-202ENSMUST00000112487 2020 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Chmp2bQ8BJF9 Clasrp-201ENSMUST00000086041 2180 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Chmp2bQ8BJF9 Plxdc1-202ENSMUST00000107564 619 ntTSL 2 BASIC17.35■□□□□ 0.37
Chmp2bQ8BJF9 Fev-202ENSMUST00000159232 928 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Chmp2bQ8BJF9 A230065N10Rik-201ENSMUST00000172178 1028 ntBASIC17.35■□□□□ 0.37
Chmp2bQ8BJF9 E030030I06Rik-201ENSMUST00000069372 876 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Chmp2bQ8BJF9 Acvr2a-201ENSMUST00000063886 5686 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Chmp2bQ8BJF9 Isg20l2-201ENSMUST00000055984 2893 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Chmp2bQ8BJF9 K230015D01Rik-201ENSMUST00000211969 1516 ntBASIC17.35■□□□□ 0.37
Chmp2bQ8BJF9 Picalm-206ENSMUST00000207484 8209 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
Chmp2bQ8BJF9 Trp73-203ENSMUST00000105643 1916 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
Chmp2bQ8BJF9 Atp6v1c1-201ENSMUST00000022904 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Chmp2bQ8BJF9 Dph1-201ENSMUST00000044949 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Chmp2bQ8BJF9 Dnaaf3-201ENSMUST00000094897 2224 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Chmp2bQ8BJF9 Dtx2-201ENSMUST00000005072 2562 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
Chmp2bQ8BJF9 Csk-201ENSMUST00000034863 2749 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Chmp2bQ8BJF9 Adam22-201ENSMUST00000046838 2773 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
Chmp2bQ8BJF9 Bicdl1-201ENSMUST00000055408 3026 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Chmp2bQ8BJF9 Susd1-202ENSMUST00000107544 3220 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
Chmp2bQ8BJF9 Sh2b1-202ENSMUST00000205340 3366 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Chmp2bQ8BJF9 Ghrhr-202ENSMUST00000203241 1328 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Chmp2bQ8BJF9 Gm36736-201ENSMUST00000206060 646 ntTSL 3 BASIC17.34■□□□□ 0.37
Chmp2bQ8BJF9 Gm26571-205ENSMUST00000223215 591 ntTSL 3 BASIC17.34■□□□□ 0.37
Chmp2bQ8BJF9 Tspan4-201ENSMUST00000026585 1466 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Chmp2bQ8BJF9 Ccdc126-201ENSMUST00000055559 2351 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Chmp2bQ8BJF9 Arfip2-202ENSMUST00000084782 2254 ntAPPRIS P2 TSL 5 BASIC17.34■□□□□ 0.37
Chmp2bQ8BJF9 Gabpa-201ENSMUST00000009120 4987 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Chmp2bQ8BJF9 Myo5b-201ENSMUST00000074157 6745 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Chmp2bQ8BJF9 Anks6-201ENSMUST00000084616 3552 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
Chmp2bQ8BJF9 Dync1li2-201ENSMUST00000041769 4627 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Chmp2bQ8BJF9 Nr1h2-204ENSMUST00000107912 1839 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
Chmp2bQ8BJF9 Gpr161-202ENSMUST00000178700 1827 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
Chmp2bQ8BJF9 Dpep3-201ENSMUST00000034371 1698 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Chmp2bQ8BJF9 2310002F09Rik-201ENSMUST00000181454 1607 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
Chmp2bQ8BJF9 Etnk1-201ENSMUST00000032413 6433 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Chmp2bQ8BJF9 Hmga1-202ENSMUST00000117254 1328 ntAPPRIS P3 TSL 2 BASIC17.33■□□□□ 0.36
Chmp2bQ8BJF9 Mrps10-203ENSMUST00000119945 1018 ntAPPRIS P4 TSL 1 (best) BASIC17.33■□□□□ 0.36
Chmp2bQ8BJF9 Alcam-206ENSMUST00000168071 878 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Chmp2bQ8BJF9 Snhg6-203ENSMUST00000182580 473 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Chmp2bQ8BJF9 Cmtm7-204ENSMUST00000216760 665 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Chmp2bQ8BJF9 Cdk2ap2-201ENSMUST00000025779 1080 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Chmp2bQ8BJF9 Tmem192-201ENSMUST00000026595 1122 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Chmp2bQ8BJF9 Oxld1-201ENSMUST00000044007 813 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Chmp2bQ8BJF9 Ppp2r1b-204ENSMUST00000174628 2195 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Chmp2bQ8BJF9 Cul1-201ENSMUST00000031697 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Chmp2bQ8BJF9 Anks1-202ENSMUST00000088027 6781 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Chmp2bQ8BJF9 Cdh2-201ENSMUST00000025166 4843 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Chmp2bQ8BJF9 Wdr41-203ENSMUST00000160115 2851 ntTSL 5 BASIC17.33■□□□□ 0.36
Chmp2bQ8BJF9 Sox4-201ENSMUST00000067230 4795 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
Chmp2bQ8BJF9 Cnksr2-201ENSMUST00000026750 5738 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Chmp2bQ8BJF9 Cadps2-201ENSMUST00000018122 4723 ntAPPRIS P3 TSL 5 BASIC17.33■□□□□ 0.36
Chmp2bQ8BJF9 Zfp326-201ENSMUST00000031227 2667 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Chmp2bQ8BJF9 Txndc11-201ENSMUST00000038424 3095 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Chmp2bQ8BJF9 Apba3-211ENSMUST00000220297 2268 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
Chmp2bQ8BJF9 Scamp3-201ENSMUST00000029684 1489 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
Chmp2bQ8BJF9 Sytl3-201ENSMUST00000097430 2100 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Chmp2bQ8BJF9 Dhrs7-201ENSMUST00000021512 1385 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Chmp2bQ8BJF9 Ccdc17-201ENSMUST00000051869 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Chmp2bQ8BJF9 Sprn-201ENSMUST00000059241 3374 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Chmp2bQ8BJF9 Osbpl1a-208ENSMUST00000121888 2674 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Chmp2bQ8BJF9 Pid1-201ENSMUST00000168574 2664 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Chmp2bQ8BJF9 A930003O13Rik-203ENSMUST00000199056 1955 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Chmp2bQ8BJF9 Htr5b-201ENSMUST00000055884 1935 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 42.6 ms