Protein–RNA interactions for Protein: Q811S7

Ubp1, Upstream-binding protein 1, mousemouse

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubp1Q811S7 Gm16861-201ENSMUST00000181498 1647 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Ubp1Q811S7 D17Wsu92e-203ENSMUST00000114863 3828 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
Ubp1Q811S7 Pdcd5-202ENSMUST00000120714 767 ntTSL 3 BASIC16.72■□□□□ 0.27
Ubp1Q811S7 Gm26879-201ENSMUST00000181127 1176 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Ubp1Q811S7 Gm45618-201ENSMUST00000209890 660 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
Ubp1Q811S7 Zfpl1-201ENSMUST00000025707 1287 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Ubp1Q811S7 Limd2-202ENSMUST00000064545 798 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
Ubp1Q811S7 Snapc3-202ENSMUST00000071544 942 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Ubp1Q811S7 Irf3-213ENSMUST00000209066 1712 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Ubp1Q811S7 Hipk2-206ENSMUST00000161779 7684 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
Ubp1Q811S7 Ppp2r1b-204ENSMUST00000174628 2195 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Ubp1Q811S7 Vps4a-201ENSMUST00000034388 2178 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Ubp1Q811S7 Cacna1b-204ENSMUST00000102939 9736 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
Ubp1Q811S7 Tmem47-203ENSMUST00000171953 1801 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Ubp1Q811S7 Rhobtb1-202ENSMUST00000067908 4422 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Ubp1Q811S7 Kcnn2-208ENSMUST00000211323 2046 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Ubp1Q811S7 A130014A01Rik-201ENSMUST00000183021 2323 ntBASIC16.71■□□□□ 0.27
Ubp1Q811S7 Pten-201ENSMUST00000013807 8292 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Ubp1Q811S7 Vrk2-201ENSMUST00000078362 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Ubp1Q811S7 Klf13-201ENSMUST00000063694 6396 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Ubp1Q811S7 Gnb1-203ENSMUST00000165335 3143 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Ubp1Q811S7 Cdv3-207ENSMUST00000190226 3107 ntTSL 5 BASIC16.71■□□□□ 0.27
Ubp1Q811S7 Misp-205ENSMUST00000219305 2569 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Ubp1Q811S7 Mlxip-202ENSMUST00000111596 2653 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Ubp1Q811S7 Gm13032-201ENSMUST00000151848 2001 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Ubp1Q811S7 Tfg-202ENSMUST00000121554 716 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
Ubp1Q811S7 Cacna2d2-203ENSMUST00000164988 5542 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
Ubp1Q811S7 Il3ra-202ENSMUST00000223589 738 ntBASIC16.71■□□□□ 0.27
Ubp1Q811S7 Pigf-201ENSMUST00000024957 988 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Ubp1Q811S7 Sec11c-201ENSMUST00000025394 807 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Ubp1Q811S7 Prok1-201ENSMUST00000049852 813 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Ubp1Q811S7 Olfr464-201ENSMUST00000074874 1084 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
Ubp1Q811S7 Ankrd17-202ENSMUST00000081914 8057 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
Ubp1Q811S7 Sars2-201ENSMUST00000094632 1868 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Ubp1Q811S7 Ing1-202ENSMUST00000209565 1971 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Ubp1Q811S7 Gm19439-201ENSMUST00000198195 2273 ntBASIC16.71■□□□□ 0.27
Ubp1Q811S7 Arfip2-202ENSMUST00000084782 2254 ntAPPRIS P2 TSL 5 BASIC16.71■□□□□ 0.27
Ubp1Q811S7 Zdhhc24-201ENSMUST00000006632 2558 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
Ubp1Q811S7 Elk4-202ENSMUST00000086556 4433 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
Ubp1Q811S7 Cdk10-201ENSMUST00000036880 1642 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Ubp1Q811S7 Prkar2a-201ENSMUST00000035220 4965 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Ubp1Q811S7 Ppp2r5d-201ENSMUST00000002839 2926 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Ubp1Q811S7 Tmem131l-201ENSMUST00000052342 4815 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
Ubp1Q811S7 Smad1-202ENSMUST00000066091 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Ubp1Q811S7 Ctsf-201ENSMUST00000119694 1975 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Ubp1Q811S7 Ankrd22-201ENSMUST00000025686 1766 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Ubp1Q811S7 Tspoap1-202ENSMUST00000100644 7390 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
Ubp1Q811S7 Cutc-202ENSMUST00000112047 1233 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Ubp1Q811S7 Gm11973-203ENSMUST00000155498 867 ntTSL 3 BASIC16.7■□□□□ 0.26
Ubp1Q811S7 Gm2431-201ENSMUST00000171531 519 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
Ubp1Q811S7 Gm7889-201ENSMUST00000185591 958 ntBASIC16.7■□□□□ 0.26
Ubp1Q811S7 AC159205.6-201ENSMUST00000224935 887 ntBASIC16.7■□□□□ 0.26
Ubp1Q811S7 Nudt8-202ENSMUST00000025802 787 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Ubp1Q811S7 Gng11-201ENSMUST00000031670 919 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Ubp1Q811S7 8030462N17Rik-201ENSMUST00000074653 3418 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Ubp1Q811S7 Dnaja3-202ENSMUST00000115854 2505 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Ubp1Q811S7 Nr1h2-213ENSMUST00000167197 1944 ntAPPRIS P3 TSL 5 BASIC16.7■□□□□ 0.26
Ubp1Q811S7 Mbnl1-201ENSMUST00000099087 5655 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Ubp1Q811S7 Spout1-201ENSMUST00000100220 1805 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Ubp1Q811S7 Fam120c-201ENSMUST00000073364 5463 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Ubp1Q811S7 Sgta-201ENSMUST00000005067 1969 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Ubp1Q811S7 Dnm1-216ENSMUST00000201494 2732 ntTSL 5 BASIC16.69■□□□□ 0.26
Ubp1Q811S7 Coil-201ENSMUST00000036649 2607 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Ubp1Q811S7 Cacna1h-205ENSMUST00000159610 8230 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Ubp1Q811S7 Cacna1h-201ENSMUST00000078496 8220 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Ubp1Q811S7 Sim1-202ENSMUST00000219436 1687 ntTSL 5 BASIC16.69■□□□□ 0.26
Ubp1Q811S7 Gm26858-201ENSMUST00000180608 2040 ntTSL 5 BASIC16.69■□□□□ 0.26
Ubp1Q811S7 Ccdc126-201ENSMUST00000055559 2351 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Ubp1Q811S7 Dnajb2-208ENSMUST00000188346 1823 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Ubp1Q811S7 Fkrp-201ENSMUST00000061390 2827 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Ubp1Q811S7 Ablim1-204ENSMUST00000111524 1251 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Ubp1Q811S7 Pih1d2-201ENSMUST00000000171 1256 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Ubp1Q811S7 Comtd1-204ENSMUST00000177527 714 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
Ubp1Q811S7 Gm28876-201ENSMUST00000188137 703 ntTSL 3 BASIC16.69■□□□□ 0.26
Ubp1Q811S7 Igsf8-201ENSMUST00000039506 2278 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Ubp1Q811S7 4930519A11Rik-201ENSMUST00000181381 1523 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Ubp1Q811S7 Tbc1d13-201ENSMUST00000044556 3595 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Ubp1Q811S7 Cdv3-201ENSMUST00000035484 3387 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
Ubp1Q811S7 Rab1a-201ENSMUST00000020358 2827 ntAPPRIS ALT1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Ubp1Q811S7 Tnfrsf25-201ENSMUST00000025706 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Ubp1Q811S7 Ak5-201ENSMUST00000045262 3323 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Ubp1Q811S7 Adgrb2-204ENSMUST00000106015 4982 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Ubp1Q811S7 Rmnd1-201ENSMUST00000042251 3139 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Ubp1Q811S7 Tm9sf2-203ENSMUST00000171318 1494 ntTSL 5 BASIC16.68■□□□□ 0.26
Ubp1Q811S7 Trabd-201ENSMUST00000081702 2439 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Ubp1Q811S7 Osgin2-201ENSMUST00000037198 2658 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Ubp1Q811S7 Ankra2-203ENSMUST00000123924 2328 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Ubp1Q811S7 Rbm33-204ENSMUST00000114884 6256 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
Ubp1Q811S7 Cyp4f13-204ENSMUST00000139353 1389 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Ubp1Q811S7 Rgcc-201ENSMUST00000022595 918 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Ubp1Q811S7 Farsa-202ENSMUST00000109754 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Ubp1Q811S7 Lrrc43-202ENSMUST00000121444 2016 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Ubp1Q811S7 Myo5b-201ENSMUST00000074157 6745 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Ubp1Q811S7 Ecel1-204ENSMUST00000161002 3033 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Ubp1Q811S7 Ing4-205ENSMUST00000140131 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Ubp1Q811S7 Gmcl1-201ENSMUST00000001185 2949 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Ubp1Q811S7 Epn1-201ENSMUST00000045277 2334 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Ubp1Q811S7 Pdlim5-211ENSMUST00000198381 1555 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
Ubp1Q811S7 Gm43294-201ENSMUST00000202850 2490 ntBASIC16.68■□□□□ 0.26
Ubp1Q811S7 Slc22a12-201ENSMUST00000113451 2213 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Retrieved 100 of 76,532 protein–RNA pairs in 23.5 ms