Protein–RNA interactions for Protein: Q6P5D8

Smchd1, Structural maintenance of chromosomes flexible hinge domain-containing protein 1, mousemouse

Known RBP Predictions only

Length 2,007 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smchd1Q6P5D8 Cacfd1-205ENSMUST00000114007 2689 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Smchd1Q6P5D8 Gpr137c-207ENSMUST00000227086 4997 ntAPPRIS ALT2 BASIC18.62■□□□□ 0.57
Smchd1Q6P5D8 Dlg3-202ENSMUST00000087984 4956 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Smchd1Q6P5D8 Klhdc10-202ENSMUST00000068259 5901 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Smchd1Q6P5D8 Zcchc2-201ENSMUST00000118196 5796 ntAPPRIS P4 TSL 5 BASIC18.62■□□□□ 0.57
Smchd1Q6P5D8 Gss-203ENSMUST00000130881 1724 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Smchd1Q6P5D8 Irf5-205ENSMUST00000167252 1693 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Smchd1Q6P5D8 Thrsp-201ENSMUST00000043077 1277 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Smchd1Q6P5D8 Gm43294-201ENSMUST00000202850 2490 ntBASIC18.62■□□□□ 0.57
Smchd1Q6P5D8 Epn1-201ENSMUST00000045277 2334 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Smchd1Q6P5D8 Slc26a10-205ENSMUST00000222911 3067 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
Smchd1Q6P5D8 Rbbp7-203ENSMUST00000112327 1862 ntTSL 5 BASIC18.62■□□□□ 0.57
Smchd1Q6P5D8 Krt12-201ENSMUST00000017741 1852 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Smchd1Q6P5D8 Gm20604-201ENSMUST00000174651 2795 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
Smchd1Q6P5D8 Gm26892-201ENSMUST00000181695 1636 ntTSL 5 BASIC18.61■□□□□ 0.57
Smchd1Q6P5D8 Bcar1-201ENSMUST00000166232 3142 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
Smchd1Q6P5D8 Gm6190-201ENSMUST00000220683 1374 ntBASIC18.61■□□□□ 0.57
Smchd1Q6P5D8 AC159205.3-201ENSMUST00000224614 874 ntBASIC18.61■□□□□ 0.57
Smchd1Q6P5D8 Gm10649-203ENSMUST00000148066 1812 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Smchd1Q6P5D8 Vps9d1-203ENSMUST00000122363 2952 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
Smchd1Q6P5D8 AU022751-202ENSMUST00000117544 2201 ntAPPRIS P4 BASIC18.61■□□□□ 0.57
Smchd1Q6P5D8 Mroh5-201ENSMUST00000071419 2766 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Smchd1Q6P5D8 Vsig10l-204ENSMUST00000203769 2473 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Smchd1Q6P5D8 Slc16a7-205ENSMUST00000210780 2562 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
Smchd1Q6P5D8 Umpk-ps-201ENSMUST00000211897 827 ntBASIC18.61■□□□□ 0.57
Smchd1Q6P5D8 Sftpb-201ENSMUST00000070437 1131 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
Smchd1Q6P5D8 Rab11b-203ENSMUST00000173860 1544 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Smchd1Q6P5D8 6430573F11Rik-202ENSMUST00000135373 2573 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Smchd1Q6P5D8 Atoh1-201ENSMUST00000101351 2121 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
Smchd1Q6P5D8 Lrrc43-202ENSMUST00000121444 2016 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Smchd1Q6P5D8 Pmm1-201ENSMUST00000023112 1300 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Smchd1Q6P5D8 Ifi27l2b-201ENSMUST00000044687 1093 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Smchd1Q6P5D8 Dvl3-204ENSMUST00000171774 2319 ntTSL 5 BASIC18.6■□□□□ 0.57
Smchd1Q6P5D8 Tmem254b-201ENSMUST00000022418 1447 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Smchd1Q6P5D8 Arhgap23-202ENSMUST00000107601 5450 ntTSL 5 BASIC18.6■□□□□ 0.57
Smchd1Q6P5D8 Cdk9-202ENSMUST00000120105 1565 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Smchd1Q6P5D8 Hoxaas2-202ENSMUST00000155922 1567 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Smchd1Q6P5D8 A130051J06Rik-201ENSMUST00000180649 2618 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Smchd1Q6P5D8 Gm11620-201ENSMUST00000118770 1845 ntBASIC18.59■□□□□ 0.57
Smchd1Q6P5D8 Atp6v1b2-201ENSMUST00000006435 2825 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Smchd1Q6P5D8 Rnf5-201ENSMUST00000015622 1238 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Smchd1Q6P5D8 4930515G01Rik-201ENSMUST00000173208 1247 ntBASIC18.59■□□□□ 0.57
Smchd1Q6P5D8 0610025J13Rik-203ENSMUST00000180374 713 ntTSL 5 BASIC18.59■□□□□ 0.57
Smchd1Q6P5D8 Mrpl36-203ENSMUST00000222030 680 ntAPPRIS P1 TSL 3 BASIC18.59■□□□□ 0.57
Smchd1Q6P5D8 Prm2-201ENSMUST00000037996 621 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Smchd1Q6P5D8 Ephx4-201ENSMUST00000049146 1279 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
Smchd1Q6P5D8 Ahnak-201ENSMUST00000092955 1046 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
Smchd1Q6P5D8 Osgin2-201ENSMUST00000037198 2658 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Smchd1Q6P5D8 Ube2h-202ENSMUST00000102993 4657 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Smchd1Q6P5D8 2810468N07Rik-201ENSMUST00000163493 1349 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Smchd1Q6P5D8 Ext2-212ENSMUST00000184931 2629 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Smchd1Q6P5D8 Cldn6-201ENSMUST00000024699 1506 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Smchd1Q6P5D8 Tmem8-201ENSMUST00000025010 3464 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Smchd1Q6P5D8 Gm27357-201ENSMUST00000183754 135 ntBASIC18.59■□□□□ 0.57
Smchd1Q6P5D8 Zkscan6-202ENSMUST00000071465 2270 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Smchd1Q6P5D8 H2-DMb1-201ENSMUST00000114232 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Smchd1Q6P5D8 A430057M04Rik-202ENSMUST00000170150 2176 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
Smchd1Q6P5D8 Mfsd4b3-201ENSMUST00000095749 1787 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Smchd1Q6P5D8 4930455H04Rik-201ENSMUST00000117592 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Smchd1Q6P5D8 Fam3a-206ENSMUST00000114143 1899 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Smchd1Q6P5D8 Cd82-204ENSMUST00000111257 1003 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
Smchd1Q6P5D8 Srpx-202ENSMUST00000115543 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
Smchd1Q6P5D8 Krt10-202ENSMUST00000211768 557 ntTSL 3 BASIC18.58■□□□□ 0.56
Smchd1Q6P5D8 AC122351.1-201ENSMUST00000220467 126 ntBASIC18.58■□□□□ 0.56
Smchd1Q6P5D8 Armc10-202ENSMUST00000095495 2700 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Smchd1Q6P5D8 Dtx3-202ENSMUST00000116229 1994 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Smchd1Q6P5D8 Gm9917-202ENSMUST00000181099 1499 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Smchd1Q6P5D8 Dok5-201ENSMUST00000029075 1768 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Smchd1Q6P5D8 Timm44-201ENSMUST00000003029 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Smchd1Q6P5D8 Samd13-205ENSMUST00000197989 591 ntTSL 5 BASIC18.57■□□□□ 0.56
Smchd1Q6P5D8 Prss40-201ENSMUST00000047840 1275 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Smchd1Q6P5D8 Slc39a1-201ENSMUST00000015467 2364 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Smchd1Q6P5D8 Mdm1-204ENSMUST00000169817 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Smchd1Q6P5D8 Mapk7-203ENSMUST00000108714 3069 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Smchd1Q6P5D8 Npas3-203ENSMUST00000223057 2724 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
Smchd1Q6P5D8 Axin1-203ENSMUST00000163421 2890 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
Smchd1Q6P5D8 Zfp264-201ENSMUST00000208656 1563 ntBASIC18.57■□□□□ 0.56
Smchd1Q6P5D8 Ddx28-201ENSMUST00000058579 2262 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
Smchd1Q6P5D8 Gm15952-201ENSMUST00000122858 490 ntTSL 3 BASIC18.57■□□□□ 0.56
Smchd1Q6P5D8 Etfb-201ENSMUST00000004729 893 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Smchd1Q6P5D8 Gzme-201ENSMUST00000089549 916 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Smchd1Q6P5D8 Rbpms-201ENSMUST00000033994 2375 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Smchd1Q6P5D8 Ipmk-201ENSMUST00000079252 5447 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
Smchd1Q6P5D8 Elac2-202ENSMUST00000101049 2884 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
Smchd1Q6P5D8 Spats2l-212ENSMUST00000170139 2315 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
Smchd1Q6P5D8 Zufsp-202ENSMUST00000218055 2180 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Smchd1Q6P5D8 Wdr55-201ENSMUST00000049323 1498 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Smchd1Q6P5D8 Gm16638-201ENSMUST00000148687 1865 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Smchd1Q6P5D8 Rbpms2-201ENSMUST00000055844 1987 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Smchd1Q6P5D8 Pias2-202ENSMUST00000114777 4968 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Smchd1Q6P5D8 Yif1b-203ENSMUST00000108238 1126 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Smchd1Q6P5D8 Smpdl3b-201ENSMUST00000030709 2006 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Smchd1Q6P5D8 Neo1-202ENSMUST00000214547 5414 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Smchd1Q6P5D8 Coil-201ENSMUST00000036649 2607 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Smchd1Q6P5D8 Fosl1-201ENSMUST00000025850 1707 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Smchd1Q6P5D8 Tubg1-201ENSMUST00000043680 1802 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Smchd1Q6P5D8 Cep68-204ENSMUST00000162811 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Smchd1Q6P5D8 Pdxdc1-202ENSMUST00000115802 2466 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Smchd1Q6P5D8 Gm43338-201ENSMUST00000198617 2223 ntBASIC18.56■□□□□ 0.56
Smchd1Q6P5D8 Ocel1-201ENSMUST00000002469 1611 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Retrieved 100 of 76,532 protein–RNA pairs in 18.9 ms