Protein–RNA interactions for Protein: P70390

Shox2, Short stature homeobox protein 2, mousemouse

Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shox2P70390 Cntln-201ENSMUST00000047023 5528 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
Shox2P70390 Agk-201ENSMUST00000031977 2531 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Shox2P70390 Gm10382-201ENSMUST00000100700 1233 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
Shox2P70390 AC117245.1-201ENSMUST00000215481 566 ntTSL 3 BASIC16.84■□□□□ 0.29
Shox2P70390 Eml3-202ENSMUST00000224272 2978 ntAPPRIS ALT2 BASIC16.84■□□□□ 0.29
Shox2P70390 Sntb2-201ENSMUST00000047425 3225 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Shox2P70390 Pcnx-204ENSMUST00000221721 8318 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
Shox2P70390 Gm4756-201ENSMUST00000207585 1716 ntTSL 5 BASIC16.84■□□□□ 0.29
Shox2P70390 Rnf220-203ENSMUST00000102690 1842 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Shox2P70390 Atp5b-201ENSMUST00000026459 1916 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Shox2P70390 Fip1l1-203ENSMUST00000113535 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Shox2P70390 Zscan2-201ENSMUST00000044115 2310 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Shox2P70390 Gopc-202ENSMUST00000105475 4317 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
Shox2P70390 Crct1-202ENSMUST00000107301 460 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
Shox2P70390 Pex5l-206ENSMUST00000108226 2632 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Shox2P70390 Trim7-202ENSMUST00000109213 2356 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Shox2P70390 Gramd4-204ENSMUST00000138134 4292 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Shox2P70390 Eif1a-202ENSMUST00000168382 1750 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Shox2P70390 Ppp2r1b-204ENSMUST00000174628 2195 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Shox2P70390 Safb-207ENSMUST00000182533 3122 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
Shox2P70390 Copz2-201ENSMUST00000018816 930 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Shox2P70390 Tmem50b-201ENSMUST00000023686 2347 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Shox2P70390 Noc4l-201ENSMUST00000042147 2075 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Shox2P70390 Ninj1-201ENSMUST00000049022 1187 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Shox2P70390 Ifitm10-201ENSMUST00000059223 3412 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Shox2P70390 Pip4k2a-201ENSMUST00000006912 3477 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Shox2P70390 Rasgrp1-201ENSMUST00000102534 5229 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
Shox2P70390 Wdr12-202ENSMUST00000117438 3251 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Shox2P70390 Sppl3-201ENSMUST00000031530 3204 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Shox2P70390 Lrch3-210ENSMUST00000170201 2902 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Shox2P70390 Baz1a-205ENSMUST00000173433 5788 ntAPPRIS P2 TSL 5 BASIC16.83■□□□□ 0.28
Shox2P70390 Gtpbp3-201ENSMUST00000007754 2800 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Shox2P70390 Zic1-201ENSMUST00000034927 5606 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Shox2P70390 Casp3-204ENSMUST00000211115 2601 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Shox2P70390 Apba1-201ENSMUST00000025830 6632 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Shox2P70390 Dffb-201ENSMUST00000030893 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Shox2P70390 Degs1-201ENSMUST00000035295 2048 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Shox2P70390 Ccdc17-201ENSMUST00000051869 2003 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Shox2P70390 AC115863.1-201ENSMUST00000214815 1813 ntBASIC16.82■□□□□ 0.28
Shox2P70390 Asic1-205ENSMUST00000228185 1818 ntBASIC16.82■□□□□ 0.28
Shox2P70390 Rhod-202ENSMUST00000117462 1495 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Shox2P70390 Ppp2ca-201ENSMUST00000020608 7102 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Shox2P70390 9430015G10Rik-208ENSMUST00000169550 2660 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
Shox2P70390 Gm15155-201ENSMUST00000112542 1009 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Shox2P70390 Tm4sf19-201ENSMUST00000115149 1257 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Shox2P70390 4933406I18Rik-202ENSMUST00000163996 904 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Shox2P70390 Cyyr1-204ENSMUST00000175700 1294 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Shox2P70390 Dynlt1f-201ENSMUST00000179554 807 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Shox2P70390 AC140930.3-201ENSMUST00000222935 274 ntBASIC16.82■□□□□ 0.28
Shox2P70390 Proca1-201ENSMUST00000060539 960 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
Shox2P70390 Smpd1-201ENSMUST00000046983 2412 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Shox2P70390 2610301B20Rik-201ENSMUST00000080517 2116 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Shox2P70390 Snap91-204ENSMUST00000098495 4150 ntAPPRIS P4 TSL 1 (best) BASIC16.82■□□□□ 0.28
Shox2P70390 Pmpca-201ENSMUST00000076431 3135 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Shox2P70390 B4galt3-201ENSMUST00000064272 1998 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Shox2P70390 Crebbp-201ENSMUST00000023165 10820 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Shox2P70390 Gk5-201ENSMUST00000085217 2815 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Shox2P70390 Farsa-202ENSMUST00000109754 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Shox2P70390 Fam110a-201ENSMUST00000062047 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Shox2P70390 Raxos1-201ENSMUST00000181100 2547 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Shox2P70390 Tes-202ENSMUST00000115467 2440 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Shox2P70390 Trmo-202ENSMUST00000086563 1554 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
Shox2P70390 Isoc2a-201ENSMUST00000125249 2244 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Shox2P70390 B4galt7-201ENSMUST00000064701 2130 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Shox2P70390 Smarcc1-204ENSMUST00000197984 3538 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Shox2P70390 Seh1l-201ENSMUST00000025421 3516 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Shox2P70390 Gm8189-202ENSMUST00000211035 2039 ntTSL 5 BASIC16.81■□□□□ 0.28
Shox2P70390 AL590614.2-201ENSMUST00000225374 1937 ntBASIC16.81■□□□□ 0.28
Shox2P70390 Slc38a10-202ENSMUST00000053692 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Shox2P70390 Hmga1-205ENSMUST00000118599 529 ntAPPRIS P3 TSL 3 BASIC16.81■□□□□ 0.28
Shox2P70390 AC140264.2-202ENSMUST00000218746 817 ntBASIC16.81■□□□□ 0.28
Shox2P70390 Mapk8ip3-205ENSMUST00000119115 4173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Shox2P70390 Rhpn2-201ENSMUST00000032705 3508 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Shox2P70390 Kcnq2-204ENSMUST00000103047 2899 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Shox2P70390 Pdzd8-201ENSMUST00000099274 7076 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Shox2P70390 Foxq1-201ENSMUST00000042118 4843 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
Shox2P70390 Gdf3-201ENSMUST00000032211 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Shox2P70390 Fbrsl1-202ENSMUST00000069483 4720 ntAPPRIS P2 TSL 5 BASIC16.81■□□□□ 0.28
Shox2P70390 Bmp8b-201ENSMUST00000002457 2940 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Shox2P70390 Cgn-204ENSMUST00000155485 2361 ntTSL 2 BASIC16.8■□□□□ 0.28
Shox2P70390 Sec31a-201ENSMUST00000094578 4228 ntAPPRIS P2 TSL 5 BASIC16.8■□□□□ 0.28
Shox2P70390 Rasgef1b-206ENSMUST00000161516 2523 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Shox2P70390 Bcs1l-202ENSMUST00000113732 1679 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
Shox2P70390 Rsrc1-205ENSMUST00000161726 3213 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Shox2P70390 Nfe2-208ENSMUST00000149111 1878 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Shox2P70390 4930518J20Rik-201ENSMUST00000195064 1478 ntBASIC16.8■□□□□ 0.28
Shox2P70390 Ccdc166-201ENSMUST00000182172 2584 ntBASIC16.8■□□□□ 0.28
Shox2P70390 Pacsin2-203ENSMUST00000171436 3693 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
Shox2P70390 Gnb3-201ENSMUST00000024206 1846 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Shox2P70390 Dync1li2-201ENSMUST00000041769 4627 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Shox2P70390 Gm10564-201ENSMUST00000097750 3113 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Shox2P70390 Atrnl1-201ENSMUST00000077282 6581 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Shox2P70390 Tacstd2-201ENSMUST00000058178 1735 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
Shox2P70390 Rrp8-201ENSMUST00000033179 3053 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
Shox2P70390 Klc4-201ENSMUST00000003642 2322 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Shox2P70390 Hsdl2-201ENSMUST00000030078 2611 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Shox2P70390 Gpr37l1-201ENSMUST00000027682 2269 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Shox2P70390 Htr5b-201ENSMUST00000055884 1935 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Shox2P70390 Ankra2-205ENSMUST00000150916 1028 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Shox2P70390 a-201ENSMUST00000029123 731 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Retrieved 100 of 76,532 protein–RNA pairs in 27.2 ms