Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Ttc39a-201ENSMUST00000064129 2356 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
Msx1P13297 AC125311.2-201ENSMUST00000227477 1940 ntBASIC16.06■□□□□ 0.16
Msx1P13297 Hmga1-204ENSMUST00000118570 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Msx1P13297 Eif1a-202ENSMUST00000168382 1750 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Msx1P13297 Ctsh-201ENSMUST00000034915 1617 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Msx1P13297 Fam181a-203ENSMUST00000191218 1419 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
Msx1P13297 Trim24-201ENSMUST00000031859 4042 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
Msx1P13297 Pkn1-201ENSMUST00000005616 6662 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
Msx1P13297 Blvrb-204ENSMUST00000133750 509 ntTSL 2 BASIC16.06■□□□□ 0.16
Msx1P13297 C030037D09Rik-202ENSMUST00000136201 1216 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Msx1P13297 Gm4217-201ENSMUST00000182243 1002 ntBASIC16.06■□□□□ 0.16
Msx1P13297 Cnih3-204ENSMUST00000209607 564 ntTSL 5 BASIC16.06■□□□□ 0.16
Msx1P13297 Gm4974-201ENSMUST00000209974 875 ntBASIC16.06■□□□□ 0.16
Msx1P13297 AC073947.1-201ENSMUST00000216991 649 ntBASIC16.06■□□□□ 0.16
Msx1P13297 Alkbh2-201ENSMUST00000053657 1073 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Msx1P13297 Nfib-206ENSMUST00000107248 3294 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Msx1P13297 Rbpms-213ENSMUST00000191473 2547 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Msx1P13297 Nrl-201ENSMUST00000062232 2504 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Msx1P13297 St7l-202ENSMUST00000106769 2428 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Msx1P13297 Il17rb-202ENSMUST00000122205 2094 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
Msx1P13297 Necab3-202ENSMUST00000109716 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Msx1P13297 Nipsnap3b-201ENSMUST00000015391 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Msx1P13297 2010016I18Rik-204ENSMUST00000190356 1562 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Msx1P13297 Iqgap2-201ENSMUST00000068603 5771 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Msx1P13297 Eva1c-202ENSMUST00000099543 1554 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Msx1P13297 B3gnt9-202ENSMUST00000136822 2516 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
Msx1P13297 2810408A11Rik-201ENSMUST00000018714 1485 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Msx1P13297 Map4k5-210ENSMUST00000171211 4334 ntTSL 2 BASIC16.05■□□□□ 0.16
Msx1P13297 Pdap1-201ENSMUST00000031627 2353 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Msx1P13297 Vangl2-203ENSMUST00000111264 2349 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Msx1P13297 Iqsec2-203ENSMUST00000112605 6017 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
Msx1P13297 Fam171a1-204ENSMUST00000115099 4149 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
Msx1P13297 Nptn-212ENSMUST00000177292 1390 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
Msx1P13297 Zmym3-206ENSMUST00000120107 5882 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
Msx1P13297 Cisd3-201ENSMUST00000107583 737 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Msx1P13297 Gm13420-201ENSMUST00000129574 1091 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
Msx1P13297 Gm18558-201ENSMUST00000186253 1214 ntBASIC16.05■□□□□ 0.16
Msx1P13297 Gm5587-201ENSMUST00000206270 674 ntBASIC16.05■□□□□ 0.16
Msx1P13297 AC156832.2-201ENSMUST00000216217 1295 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Msx1P13297 Fthl17f-201ENSMUST00000097029 847 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
Msx1P13297 Proser2-201ENSMUST00000054254 2061 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Msx1P13297 Gm26858-201ENSMUST00000180608 2040 ntTSL 5 BASIC16.05■□□□□ 0.16
Msx1P13297 Acadvl-201ENSMUST00000018718 2020 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
Msx1P13297 Eif2b4-201ENSMUST00000077693 2025 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Msx1P13297 Fam110a-204ENSMUST00000109865 1853 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
Msx1P13297 Stk32c-202ENSMUST00000165870 1883 ntTSL 5 BASIC16.05■□□□□ 0.16
Msx1P13297 Coil-201ENSMUST00000036649 2607 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Msx1P13297 Dhx32-203ENSMUST00000106139 2233 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Msx1P13297 Dmap1-201ENSMUST00000102687 1566 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Msx1P13297 Rtkn-201ENSMUST00000065512 2191 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Msx1P13297 Slc25a31-201ENSMUST00000091184 2128 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Msx1P13297 Mtmr3-202ENSMUST00000109943 5674 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Msx1P13297 Rnf112-202ENSMUST00000060255 3161 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Msx1P13297 Ddx19a-201ENSMUST00000040416 2547 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Msx1P13297 Hnrnpu-201ENSMUST00000037748 7640 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Msx1P13297 Pdcd5-202ENSMUST00000120714 767 ntTSL 3 BASIC16.04■□□□□ 0.16
Msx1P13297 Hist1h2br-203ENSMUST00000180288 1256 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Msx1P13297 Gm27389-201ENSMUST00000183622 195 ntBASIC16.04■□□□□ 0.16
Msx1P13297 Ndufs7-201ENSMUST00000020361 758 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Msx1P13297 AC133598.3-202ENSMUST00000224219 531 ntBASIC16.04■□□□□ 0.16
Msx1P13297 Krtap1-5-201ENSMUST00000054532 1041 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
Msx1P13297 Tctex1d4-201ENSMUST00000062206 990 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Msx1P13297 Znhit1-202ENSMUST00000085941 740 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Msx1P13297 Hist1h2bq-202ENSMUST00000091749 1254 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Msx1P13297 Cacnb1-204ENSMUST00000107561 1778 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Msx1P13297 Phldb3-201ENSMUST00000073325 2273 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
Msx1P13297 Matn4-202ENSMUST00000103104 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Msx1P13297 Gm37519-201ENSMUST00000191687 2210 ntBASIC16.04■□□□□ 0.16
Msx1P13297 Ccdc105-201ENSMUST00000105383 1714 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Msx1P13297 Prss12-201ENSMUST00000029603 2602 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Msx1P13297 Epn1-202ENSMUST00000098845 2565 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Msx1P13297 Ostm1-201ENSMUST00000040718 3006 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Msx1P13297 Man1c1-202ENSMUST00000054096 4715 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
Msx1P13297 Fam131c-201ENSMUST00000006380 1433 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Msx1P13297 Gm43808-201ENSMUST00000202534 2065 ntBASIC16.03■□□□□ 0.16
Msx1P13297 D1Ertd622e-204ENSMUST00000153115 3495 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Msx1P13297 Muc2-203ENSMUST00000179227 399 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Msx1P13297 Gm28033-201ENSMUST00000184224 96 ntBASIC16.03■□□□□ 0.16
Msx1P13297 Gm17807-201ENSMUST00000186869 298 ntBASIC16.03■□□□□ 0.16
Msx1P13297 Ttc32-203ENSMUST00000219488 768 ntTSL 3 BASIC16.03■□□□□ 0.16
Msx1P13297 Gm21559-201ENSMUST00000220638 855 ntBASIC16.03■□□□□ 0.16
Msx1P13297 Cebpg-201ENSMUST00000070191 914 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
Msx1P13297 Gm8587-201ENSMUST00000076538 843 ntBASIC16.03■□□□□ 0.16
Msx1P13297 Olfr315-201ENSMUST00000081533 998 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
Msx1P13297 Mrpl9-201ENSMUST00000029786 1612 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Msx1P13297 Il17re-203ENSMUST00000101065 1973 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Msx1P13297 Rtn4-204ENSMUST00000102842 2257 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Msx1P13297 Rprd1b-207ENSMUST00000152452 1910 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Msx1P13297 Raver2-201ENSMUST00000038463 4045 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Msx1P13297 Psmd8-203ENSMUST00000186182 1512 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Msx1P13297 Rsu1-201ENSMUST00000028059 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Msx1P13297 Ptges3l-202ENSMUST00000103102 1463 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Msx1P13297 Nxn-201ENSMUST00000021204 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Msx1P13297 Lins1-203ENSMUST00000121777 2729 ntAPPRIS P3 TSL 2 BASIC16.03■□□□□ 0.16
Msx1P13297 8030462N17Rik-201ENSMUST00000074653 3418 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Msx1P13297 Sh3yl1-202ENSMUST00000110880 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
Msx1P13297 Ctnnal1-202ENSMUST00000107612 850 ntTSL 3 BASIC16.02■□□□□ 0.16
Msx1P13297 Gm9013-201ENSMUST00000132939 882 ntBASIC16.02■□□□□ 0.16
Msx1P13297 Aicda-202ENSMUST00000160685 1292 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Msx1P13297 Gm28914-201ENSMUST00000188115 667 ntTSL 2 BASIC16.02■□□□□ 0.16
Retrieved 100 of 76,532 protein–RNA pairs in 26.8 ms