Protein–RNA interactions for Protein: A0A0B4J1H5

Trbv20, T cell receptor beta, variable 20 (Fragment), mousemouse

Predictions only

Length 111 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv20A0A0B4J1H5 Ankrd29-201ENSMUST00000118525 3242 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trbv20A0A0B4J1H5 Igdcc3-203ENSMUST00000217371 3183 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trbv20A0A0B4J1H5 Bloc1s3-201ENSMUST00000077408 3188 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trbv20A0A0B4J1H5 Fam213a-202ENSMUST00000118466 1567 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trbv20A0A0B4J1H5 6330411D24Rik-201ENSMUST00000211105 1568 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Trbv20A0A0B4J1H5 Rrp9-201ENSMUST00000047721 1586 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trbv20A0A0B4J1H5 Galnt17-202ENSMUST00000160609 2875 ntTSL 5 BASIC15.23■□□□□ 0.03
Trbv20A0A0B4J1H5 Sharpin-201ENSMUST00000023211 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trbv20A0A0B4J1H5 Sh3bp2-203ENSMUST00000118545 3034 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trbv20A0A0B4J1H5 Bcs1l-202ENSMUST00000113732 1679 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
Trbv20A0A0B4J1H5 Ssu72-201ENSMUST00000030905 1472 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trbv20A0A0B4J1H5 Pola2-202ENSMUST00000165143 2397 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Trbv20A0A0B4J1H5 Gm2399-201ENSMUST00000104944 225 ntBASIC15.23■□□□□ 0.03
Trbv20A0A0B4J1H5 Rpl27-202ENSMUST00000107249 732 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
Trbv20A0A0B4J1H5 a-202ENSMUST00000109697 705 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
Trbv20A0A0B4J1H5 Tjap1-214ENSMUST00000225413 2189 ntAPPRIS ALT2 BASIC15.23■□□□□ 0.03
Trbv20A0A0B4J1H5 Wipi2-201ENSMUST00000036872 5171 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Trbv20A0A0B4J1H5 Nubpl-201ENSMUST00000040090 2987 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trbv20A0A0B4J1H5 Kdelc2-201ENSMUST00000037853 3642 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trbv20A0A0B4J1H5 Hhatl-201ENSMUST00000035110 1870 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trbv20A0A0B4J1H5 Chst2-201ENSMUST00000036267 7328 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trbv20A0A0B4J1H5 Ptpdc1-201ENSMUST00000035824 4402 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trbv20A0A0B4J1H5 Ppp4r3a-201ENSMUST00000048305 4516 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trbv20A0A0B4J1H5 Pex12-205ENSMUST00000175741 2337 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trbv20A0A0B4J1H5 Itsn1-203ENSMUST00000095909 6103 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Trbv20A0A0B4J1H5 Kri1-205ENSMUST00000184326 2490 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
Trbv20A0A0B4J1H5 Zkscan14-201ENSMUST00000031632 1967 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trbv20A0A0B4J1H5 Rbpms2-201ENSMUST00000055844 1987 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trbv20A0A0B4J1H5 9530080O11Rik-201ENSMUST00000137239 1475 ntTSL 2 BASIC15.22■□□□□ 0.03
Trbv20A0A0B4J1H5 Kif17-204ENSMUST00000105821 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trbv20A0A0B4J1H5 Ly6e-201ENSMUST00000051698 2281 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trbv20A0A0B4J1H5 Nkain1-201ENSMUST00000105993 1202 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trbv20A0A0B4J1H5 Tomm6-202ENSMUST00000113302 749 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trbv20A0A0B4J1H5 Ssbp1-203ENSMUST00000117411 933 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trbv20A0A0B4J1H5 Gm4285-201ENSMUST00000131222 902 ntTSL 2 BASIC15.22■□□□□ 0.03
Trbv20A0A0B4J1H5 Gm45890-201ENSMUST00000212043 1026 ntTSL 5 BASIC15.22■□□□□ 0.03
Trbv20A0A0B4J1H5 AC104834.1-201ENSMUST00000222611 1056 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
Trbv20A0A0B4J1H5 1700012B09Rik-201ENSMUST00000060330 688 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trbv20A0A0B4J1H5 Col18a1-202ENSMUST00000081654 5063 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Trbv20A0A0B4J1H5 Mgat1-201ENSMUST00000081794 2976 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trbv20A0A0B4J1H5 Vangl2-201ENSMUST00000027837 5698 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trbv20A0A0B4J1H5 Mtif3-201ENSMUST00000016654 2131 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trbv20A0A0B4J1H5 Samd4-211ENSMUST00000228404 3039 ntAPPRIS ALT2 BASIC15.22■□□□□ 0.03
Trbv20A0A0B4J1H5 Zfp740-202ENSMUST00000119168 3932 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Trbv20A0A0B4J1H5 Serbp1-203ENSMUST00000203077 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Trbv20A0A0B4J1H5 Dnajc3-201ENSMUST00000022734 5141 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Trbv20A0A0B4J1H5 Nfkbid-202ENSMUST00000108175 2000 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Trbv20A0A0B4J1H5 Irak1-205ENSMUST00000114353 1896 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
Trbv20A0A0B4J1H5 Fam185a-201ENSMUST00000056045 3027 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Trbv20A0A0B4J1H5 Foxc2-201ENSMUST00000054691 2725 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
Trbv20A0A0B4J1H5 Diaph2-201ENSMUST00000037854 3742 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Trbv20A0A0B4J1H5 Trmo-202ENSMUST00000086563 1554 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
Trbv20A0A0B4J1H5 Disc1-201ENSMUST00000074562 2597 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
Trbv20A0A0B4J1H5 Disc1-203ENSMUST00000098311 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Trbv20A0A0B4J1H5 Polr2j-202ENSMUST00000111127 900 ntTSL 2 BASIC15.21■□□□□ 0.03
Trbv20A0A0B4J1H5 2700033N17Rik-201ENSMUST00000140185 721 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Trbv20A0A0B4J1H5 Mpig6b-202ENSMUST00000174190 729 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Trbv20A0A0B4J1H5 1810059H22Rik-205ENSMUST00000204570 690 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Trbv20A0A0B4J1H5 Nfu1-201ENSMUST00000032060 948 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
Trbv20A0A0B4J1H5 March8-201ENSMUST00000079012 4450 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Trbv20A0A0B4J1H5 Mtmr12-201ENSMUST00000038172 6840 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Trbv20A0A0B4J1H5 Mapt-202ENSMUST00000106988 2202 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
Trbv20A0A0B4J1H5 Tmem117-201ENSMUST00000080141 2781 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Trbv20A0A0B4J1H5 Gramd4-204ENSMUST00000138134 4292 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Trbv20A0A0B4J1H5 Rusc1-203ENSMUST00000166687 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.02
Trbv20A0A0B4J1H5 Nr1h2-213ENSMUST00000167197 1944 ntAPPRIS P3 TSL 5 BASIC15.21■□□□□ 0.02
Trbv20A0A0B4J1H5 1700034J05Rik-202ENSMUST00000111622 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.02
Trbv20A0A0B4J1H5 Tgfb2-201ENSMUST00000045288 5116 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Trbv20A0A0B4J1H5 Zbtb16-202ENSMUST00000216150 2505 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Trbv20A0A0B4J1H5 Lat2-202ENSMUST00000077636 1717 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Trbv20A0A0B4J1H5 Arpc2-202ENSMUST00000113819 1313 ntTSL 5 BASIC15.2■□□□□ 0.02
Trbv20A0A0B4J1H5 Hipk2-206ENSMUST00000161779 7684 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
Trbv20A0A0B4J1H5 Tfap2a-206ENSMUST00000224665 1958 ntAPPRIS ALT1 BASIC15.2■□□□□ 0.02
Trbv20A0A0B4J1H5 Dcaf17-203ENSMUST00000112159 2490 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Trbv20A0A0B4J1H5 Tmem183a-201ENSMUST00000049470 3149 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Trbv20A0A0B4J1H5 Rab33b-201ENSMUST00000054387 3492 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Trbv20A0A0B4J1H5 Rbm47-203ENSMUST00000113724 2186 ntAPPRIS P3 TSL 5 BASIC15.2■□□□□ 0.02
Trbv20A0A0B4J1H5 Crct1-202ENSMUST00000107301 460 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
Trbv20A0A0B4J1H5 1810059C17Rik-201ENSMUST00000125173 487 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Trbv20A0A0B4J1H5 Eif1a-202ENSMUST00000168382 1750 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Trbv20A0A0B4J1H5 Car2-201ENSMUST00000029078 1788 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Trbv20A0A0B4J1H5 Rnpep-202ENSMUST00000077340 2288 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Trbv20A0A0B4J1H5 Ripor2-205ENSMUST00000110384 5608 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Trbv20A0A0B4J1H5 Cacna1h-205ENSMUST00000159610 8230 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Trbv20A0A0B4J1H5 Cacna1h-201ENSMUST00000078496 8220 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Trbv20A0A0B4J1H5 Npffr1-201ENSMUST00000020287 3479 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
Trbv20A0A0B4J1H5 Mydgf-201ENSMUST00000019723 1710 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Trbv20A0A0B4J1H5 Zfp384-207ENSMUST00000112427 3072 ntAPPRIS P2 TSL 5 BASIC15.2■□□□□ 0.02
Trbv20A0A0B4J1H5 Shank3-203ENSMUST00000109309 7365 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Trbv20A0A0B4J1H5 Idnk-202ENSMUST00000109868 1462 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Trbv20A0A0B4J1H5 Agpat1-201ENSMUST00000037489 2190 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Trbv20A0A0B4J1H5 Ube2r2-201ENSMUST00000040008 3600 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Trbv20A0A0B4J1H5 Fnbp1-205ENSMUST00000113552 1910 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Trbv20A0A0B4J1H5 Hpca-202ENSMUST00000095807 1666 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Trbv20A0A0B4J1H5 Slc35a1-201ENSMUST00000029970 2039 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Trbv20A0A0B4J1H5 Ran-201ENSMUST00000031383 2377 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Trbv20A0A0B4J1H5 Rarg-202ENSMUST00000063339 2718 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Trbv20A0A0B4J1H5 Psmd8-201ENSMUST00000059642 1540 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Trbv20A0A0B4J1H5 Trmt2a-202ENSMUST00000100099 2235 ntAPPRIS P5 TSL 1 (best) BASIC15.19■□□□□ 0.02
Trbv20A0A0B4J1H5 Tmem260-201ENSMUST00000111735 5485 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
Retrieved 100 of 76,532 protein–RNA pairs in 37.4 ms