Protein–RNA interactions for Protein: Q9D6Y1

Ccdc3, Coiled-coil domain-containing protein 3, mousemouse

Predictions only

Length 273 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc3Q9D6Y1 Gm24476-201ENSMUST00000157437 131 ntBASIC0.34□□□□□ -2.36
Ccdc3Q9D6Y1 Gm22814-201ENSMUST00000157452 104 ntBASIC0.34□□□□□ -2.36
Ccdc3Q9D6Y1 Gm23640-201ENSMUST00000157860 104 ntBASIC0.34□□□□□ -2.36
Ccdc3Q9D6Y1 Gm24847-201ENSMUST00000158032 108 ntBASIC0.34□□□□□ -2.36
Ccdc3Q9D6Y1 Gm25558-201ENSMUST00000158083 106 ntBASIC0.34□□□□□ -2.36
Ccdc3Q9D6Y1 Gm22088-201ENSMUST00000158341 117 ntBASIC0.34□□□□□ -2.36
Ccdc3Q9D6Y1 Gm25838-201ENSMUST00000158920 120 ntBASIC0.34□□□□□ -2.36
Ccdc3Q9D6Y1 Gm10772-201ENSMUST00000167981 255 ntAPPRIS P1 BASIC0.34□□□□□ -2.36
Ccdc3Q9D6Y1 Gm26116-201ENSMUST00000175600 77 ntBASIC0.34□□□□□ -2.36
Ccdc3Q9D6Y1 Olfr1401-ps1-201ENSMUST00000202296 211 ntBASIC0.34□□□□□ -2.36
Ccdc3Q9D6Y1 AC132615.1-201ENSMUST00000213873 255 ntBASIC0.34□□□□□ -2.36
Ccdc3Q9D6Y1 Gm22364-201ENSMUST00000083097 98 ntBASIC0.34□□□□□ -2.36
Ccdc3Q9D6Y1 Mir669f-201ENSMUST00000103850 121 ntBASIC0.33□□□□□ -2.36
Ccdc3Q9D6Y1 Gm23994-201ENSMUST00000158059 88 ntBASIC0.33□□□□□ -2.36
Ccdc3Q9D6Y1 Mir6350-201ENSMUST00000183639 105 ntBASIC0.33□□□□□ -2.36
Ccdc3Q9D6Y1 Olfr942-ps1-201ENSMUST00000215640 662 ntBASIC0.33□□□□□ -2.36
Ccdc3Q9D6Y1 AC165092.3-201ENSMUST00000223602 282 ntBASIC0.33□□□□□ -2.36
Ccdc3Q9D6Y1 Gm25138-201ENSMUST00000083248 136 ntBASIC0.33□□□□□ -2.36
Ccdc3Q9D6Y1 Gm22021-201ENSMUST00000104353 107 ntBASIC0.32□□□□□ -2.36
Ccdc3Q9D6Y1 Gm24963-201ENSMUST00000157916 144 ntBASIC0.32□□□□□ -2.36
Ccdc3Q9D6Y1 Gm16539-201ENSMUST00000160086 327 ntBASIC0.32□□□□□ -2.36
Ccdc3Q9D6Y1 Gm29296-201ENSMUST00000188146 320 ntTSL 5 BASIC0.32□□□□□ -2.36
Ccdc3Q9D6Y1 Mir3535-201ENSMUST00000197651 147 ntBASIC0.32□□□□□ -2.36
Ccdc3Q9D6Y1 Gm45508-201ENSMUST00000209298 299 ntBASIC0.32□□□□□ -2.36
Ccdc3Q9D6Y1 Olfr1007-ps1-201ENSMUST00000217468 138 ntBASIC0.32□□□□□ -2.36
Ccdc3Q9D6Y1 AC113441.1-201ENSMUST00000223464 134 ntBASIC0.32□□□□□ -2.36
Ccdc3Q9D6Y1 Gm24043-201ENSMUST00000083108 116 ntBASIC0.32□□□□□ -2.36
Ccdc3Q9D6Y1 Gm6358-201ENSMUST00000089101 156 ntAPPRIS ALT2 BASIC0.32□□□□□ -2.36
Ccdc3Q9D6Y1 Mir451a-201ENSMUST00000093557 72 ntBASIC0.32□□□□□ -2.36
Ccdc3Q9D6Y1 Mir500-201ENSMUST00000093600 92 ntBASIC0.32□□□□□ -2.36
Ccdc3Q9D6Y1 Mir710-201ENSMUST00000102088 110 ntBASIC0.31□□□□□ -2.36
Ccdc3Q9D6Y1 Gm23531-201ENSMUST00000104567 68 ntBASIC0.31□□□□□ -2.36
Ccdc3Q9D6Y1 Gm11008-201ENSMUST00000109032 622 ntTSL 5 BASIC0.31□□□□□ -2.36
Ccdc3Q9D6Y1 Gm23982-201ENSMUST00000157141 106 ntBASIC0.31□□□□□ -2.36
Ccdc3Q9D6Y1 Gm26415-201ENSMUST00000157673 292 ntBASIC0.31□□□□□ -2.36
Ccdc3Q9D6Y1 Gm26482-201ENSMUST00000158015 62 ntBASIC0.31□□□□□ -2.36
Ccdc3Q9D6Y1 Gm24500-201ENSMUST00000158447 124 ntBASIC0.31□□□□□ -2.36
Ccdc3Q9D6Y1 Gm28669-201ENSMUST00000188400 100 ntBASIC0.31□□□□□ -2.36
Ccdc3Q9D6Y1 AC154994.1-201ENSMUST00000217395 302 ntBASIC0.31□□□□□ -2.36
Ccdc3Q9D6Y1 RMST_1.1-206ENSMUST00000218255 309 ntTSL 3 BASIC0.31□□□□□ -2.36
Ccdc3Q9D6Y1 Snord42a-201ENSMUST00000082606 65 ntBASIC0.31□□□□□ -2.36
Ccdc3Q9D6Y1 Gm24000-201ENSMUST00000158063 89 ntBASIC0.3□□□□□ -2.36
Ccdc3Q9D6Y1 Gm23763-201ENSMUST00000158345 60 ntBASIC0.3□□□□□ -2.36
Ccdc3Q9D6Y1 Gm25718-201ENSMUST00000158632 118 ntBASIC0.3□□□□□ -2.36
Ccdc3Q9D6Y1 Gm24880-201ENSMUST00000158776 85 ntBASIC0.3□□□□□ -2.36
Ccdc3Q9D6Y1 Gm24737-201ENSMUST00000158861 100 ntBASIC0.3□□□□□ -2.36
Ccdc3Q9D6Y1 Gm25615-201ENSMUST00000177836 94 ntBASIC0.3□□□□□ -2.36
Ccdc3Q9D6Y1 Nbdy-205ENSMUST00000208235 132 ntAPPRIS P2 TSL 2 BASIC0.3□□□□□ -2.36
Ccdc3Q9D6Y1 Gm45471-201ENSMUST00000211270 281 ntBASIC0.3□□□□□ -2.36
Ccdc3Q9D6Y1 Gm45741-201ENSMUST00000212661 152 ntTSL 1 (best) BASIC0.3□□□□□ -2.36
Ccdc3Q9D6Y1 Gm30155-201ENSMUST00000223458 339 ntBASIC0.3□□□□□ -2.36
Ccdc3Q9D6Y1 Gm22283-201ENSMUST00000082556 161 ntBASIC0.3□□□□□ -2.36
Ccdc3Q9D6Y1 Gm24204-201ENSMUST00000082950 107 ntBASIC0.3□□□□□ -2.36
Ccdc3Q9D6Y1 Mir181a-1-201ENSMUST00000083631 87 ntBASIC0.3□□□□□ -2.36
Ccdc3Q9D6Y1 Mir709-201ENSMUST00000102190 88 ntBASIC0.29□□□□□ -2.36
Ccdc3Q9D6Y1 Traj37-201ENSMUST00000103705 60 ntAPPRIS P1 BASIC0.29□□□□□ -2.36
Ccdc3Q9D6Y1 Gm25878-201ENSMUST00000104327 93 ntBASIC0.29□□□□□ -2.36
Ccdc3Q9D6Y1 Scgb1b23-ps-201ENSMUST00000116009 252 ntBASIC0.29□□□□□ -2.36
Ccdc3Q9D6Y1 Gm14946-201ENSMUST00000119859 296 ntBASIC0.29□□□□□ -2.36
Ccdc3Q9D6Y1 Gm24909-201ENSMUST00000157290 280 ntBASIC0.29□□□□□ -2.36
Ccdc3Q9D6Y1 Gm22706-201ENSMUST00000157907 112 ntBASIC0.29□□□□□ -2.36
Ccdc3Q9D6Y1 Gm23278-201ENSMUST00000157911 143 ntBASIC0.29□□□□□ -2.36
Ccdc3Q9D6Y1 Vmn2r-ps20-201ENSMUST00000179853 382 ntBASIC0.29□□□□□ -2.36
Ccdc3Q9D6Y1 Scgb1b6-ps-201ENSMUST00000185337 199 ntBASIC0.29□□□□□ -2.36
Ccdc3Q9D6Y1 Gm37338-201ENSMUST00000191986 127 ntBASIC0.29□□□□□ -2.36
Ccdc3Q9D6Y1 Olfr375-ps1-201ENSMUST00000198131 249 ntBASIC0.29□□□□□ -2.36
Ccdc3Q9D6Y1 Gm43944-201ENSMUST00000205220 120 ntBASIC0.29□□□□□ -2.36
Ccdc3Q9D6Y1 Snora19-201ENSMUST00000082962 132 ntBASIC0.29□□□□□ -2.36
Ccdc3Q9D6Y1 Gm24316-201ENSMUST00000083041 107 ntBASIC0.29□□□□□ -2.36
Ccdc3Q9D6Y1 Gm22421-201ENSMUST00000083058 107 ntBASIC0.29□□□□□ -2.36
Ccdc3Q9D6Y1 Gm23658-201ENSMUST00000083233 132 ntBASIC0.29□□□□□ -2.36
Ccdc3Q9D6Y1 Gm25497-201ENSMUST00000104425 132 ntBASIC0.28□□□□□ -2.36
Ccdc3Q9D6Y1 Olfr1169-ps1-201ENSMUST00000121437 233 ntBASIC0.28□□□□□ -2.36
Ccdc3Q9D6Y1 Gm26255-201ENSMUST00000122492 103 ntBASIC0.28□□□□□ -2.36
Ccdc3Q9D6Y1 Gm25393-201ENSMUST00000157336 285 ntBASIC0.28□□□□□ -2.36
Ccdc3Q9D6Y1 Gm26152-201ENSMUST00000157427 101 ntBASIC0.28□□□□□ -2.36
Ccdc3Q9D6Y1 Gm24467-201ENSMUST00000157887 126 ntBASIC0.28□□□□□ -2.36
Ccdc3Q9D6Y1 Gm23194-201ENSMUST00000158813 105 ntBASIC0.28□□□□□ -2.36
Ccdc3Q9D6Y1 Gm27997-201ENSMUST00000184942 69 ntBASIC0.28□□□□□ -2.36
Ccdc3Q9D6Y1 Gm45738-201ENSMUST00000203645 233 ntTSL 5 BASIC0.28□□□□□ -2.36
Ccdc3Q9D6Y1 Gm44959-201ENSMUST00000209127 231 ntBASIC0.28□□□□□ -2.36
Ccdc3Q9D6Y1 AC164117.2-201ENSMUST00000222090 327 ntBASIC0.28□□□□□ -2.36
Ccdc3Q9D6Y1 Gm26326-201ENSMUST00000083070 129 ntBASIC0.28□□□□□ -2.36
Ccdc3Q9D6Y1 Gm24616-201ENSMUST00000083274 139 ntBASIC0.28□□□□□ -2.36
Ccdc3Q9D6Y1 Gm23845-201ENSMUST00000083834 152 ntBASIC0.28□□□□□ -2.36
Ccdc3Q9D6Y1 Gm13723-201ENSMUST00000130722 5036 ntAPPRIS P1 TSL 2 BASIC0.28□□□□□ -2.36
Ccdc3Q9D6Y1 Gm382-201ENSMUST00000096332 4070 ntAPPRIS P1 TSL 1 (best) BASIC0.28□□□□□ -2.37
Ccdc3Q9D6Y1 Gm12837-201ENSMUST00000120131 373 ntBASIC0.27□□□□□ -2.37
Ccdc3Q9D6Y1 Gm25318-201ENSMUST00000122554 314 ntBASIC0.27□□□□□ -2.37
Ccdc3Q9D6Y1 n-R5s18-201ENSMUST00000122740 121 ntBASIC0.27□□□□□ -2.37
Ccdc3Q9D6Y1 Gm26274-201ENSMUST00000157103 321 ntBASIC0.27□□□□□ -2.37
Ccdc3Q9D6Y1 Gm22586-201ENSMUST00000157507 122 ntBASIC0.27□□□□□ -2.37
Ccdc3Q9D6Y1 Gm22097-201ENSMUST00000157929 278 ntBASIC0.27□□□□□ -2.37
Ccdc3Q9D6Y1 Gm24634-201ENSMUST00000158672 107 ntBASIC0.27□□□□□ -2.37
Ccdc3Q9D6Y1 Scarna3a-201ENSMUST00000158911 140 ntBASIC0.27□□□□□ -2.37
Ccdc3Q9D6Y1 Gm26194-201ENSMUST00000175036 71 ntBASIC0.27□□□□□ -2.37
Ccdc3Q9D6Y1 Gm24415-201ENSMUST00000180218 107 ntBASIC0.27□□□□□ -2.37
Ccdc3Q9D6Y1 Gm37763-201ENSMUST00000193445 120 ntBASIC0.27□□□□□ -2.37
Ccdc3Q9D6Y1 Mir30c-2-201ENSMUST00000083633 84 ntBASIC0.27□□□□□ -2.37
Ccdc3Q9D6Y1 CT030170.3-201ENSMUST00000221205 1815 ntBASIC0.27□□□□□ -2.37
Retrieved 100 of 76,532 protein–RNA pairs in 448 ms