Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 Slc16a7-206ENSMUST00000211781 10981 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
Rnf40Q3U319 Gm43753-201ENSMUST00000196539 3309 ntBASIC3.24□□□□□ -1.89
Rnf40Q3U319 Gm23203-201ENSMUST00000104374 107 ntBASIC3.24□□□□□ -1.89
Rnf40Q3U319 Gm16171-201ENSMUST00000118004 324 ntBASIC3.24□□□□□ -1.89
Rnf40Q3U319 Gm22205-201ENSMUST00000122655 71 ntBASIC3.24□□□□□ -1.89
Rnf40Q3U319 Gm23390-201ENSMUST00000157393 106 ntBASIC3.24□□□□□ -1.89
Rnf40Q3U319 Gm23854-201ENSMUST00000158378 108 ntBASIC3.24□□□□□ -1.89
Rnf40Q3U319 Gm26004-201ENSMUST00000158804 116 ntBASIC3.24□□□□□ -1.89
Rnf40Q3U319 Gm22910-201ENSMUST00000178568 132 ntBASIC3.24□□□□□ -1.89
Rnf40Q3U319 Mir8096-201ENSMUST00000184526 127 ntBASIC3.24□□□□□ -1.89
Rnf40Q3U319 AL603834.1-201ENSMUST00000198372 121 ntBASIC3.24□□□□□ -1.89
Rnf40Q3U319 Gm42807-201ENSMUST00000200141 329 ntBASIC3.24□□□□□ -1.89
Rnf40Q3U319 Snora7a-201ENSMUST00000082629 140 ntBASIC3.24□□□□□ -1.89
Rnf40Q3U319 Gm24147-201ENSMUST00000082763 144 ntBASIC3.24□□□□□ -1.89
Rnf40Q3U319 Gm25854-201ENSMUST00000082792 72 ntBASIC3.24□□□□□ -1.89
Rnf40Q3U319 Zfp985-201ENSMUST00000081742 2762 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
Rnf40Q3U319 Gm25611-201ENSMUST00000104017 133 ntBASIC3.23□□□□□ -1.89
Rnf40Q3U319 Gm9009-201ENSMUST00000117321 326 ntBASIC3.23□□□□□ -1.89
Rnf40Q3U319 Gm22310-201ENSMUST00000157509 116 ntBASIC3.23□□□□□ -1.89
Rnf40Q3U319 Gm16111-201ENSMUST00000162128 285 ntBASIC3.23□□□□□ -1.89
Rnf40Q3U319 Gm25470-201ENSMUST00000175576 111 ntBASIC3.23□□□□□ -1.89
Rnf40Q3U319 Gm24656-201ENSMUST00000177548 132 ntBASIC3.23□□□□□ -1.89
Rnf40Q3U319 Trav7d-3-201ENSMUST00000179789 402 ntAPPRIS P1 BASIC3.23□□□□□ -1.89
Rnf40Q3U319 Gm44578-201ENSMUST00000207236 3835 ntBASIC3.23□□□□□ -1.89
Rnf40Q3U319 Gm9765-201ENSMUST00000043170 321 ntBASIC3.23□□□□□ -1.89
Rnf40Q3U319 Slain1os-201ENSMUST00000160117 3101 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
Rnf40Q3U319 Gm25526-201ENSMUST00000104332 132 ntBASIC3.22□□□□□ -1.89
Rnf40Q3U319 Ptma-ps1-201ENSMUST00000181079 309 ntBASIC3.22□□□□□ -1.89
Rnf40Q3U319 Gm25899-201ENSMUST00000082672 141 ntBASIC3.22□□□□□ -1.89
Rnf40Q3U319 Gm23376-201ENSMUST00000082938 160 ntBASIC3.22□□□□□ -1.89
Rnf40Q3U319 Gm24162-201ENSMUST00000093665 102 ntBASIC3.22□□□□□ -1.89
Rnf40Q3U319 Gm44680-201ENSMUST00000208414 2910 ntBASIC3.22□□□□□ -1.89
Rnf40Q3U319 n-R5s26-201ENSMUST00000104601 122 ntBASIC3.21□□□□□ -1.9
Rnf40Q3U319 Gm26477-201ENSMUST00000122617 323 ntBASIC3.21□□□□□ -1.9
Rnf40Q3U319 n-R5s188-201ENSMUST00000122646 105 ntBASIC3.21□□□□□ -1.9
Rnf40Q3U319 Gm23602-201ENSMUST00000157258 132 ntBASIC3.21□□□□□ -1.9
Rnf40Q3U319 Gm25476-201ENSMUST00000175125 185 ntBASIC3.21□□□□□ -1.9
Rnf40Q3U319 Gm27878-201ENSMUST00000184000 106 ntBASIC3.21□□□□□ -1.9
Rnf40Q3U319 Gm45386-201ENSMUST00000210194 218 ntBASIC3.21□□□□□ -1.9
Rnf40Q3U319 Gm23736-201ENSMUST00000082553 75 ntBASIC3.21□□□□□ -1.9
Rnf40Q3U319 Gm24805-201ENSMUST00000082931 104 ntBASIC3.21□□□□□ -1.9
Rnf40Q3U319 Olfr394-202ENSMUST00000214284 5562 ntAPPRIS P1 TSL 5 BASIC3.21□□□□□ -1.9
Rnf40Q3U319 Olfr166-202ENSMUST00000213531 4205 ntAPPRIS P1 TSL 5 BASIC3.2□□□□□ -1.9
Rnf40Q3U319 Ctdspl2-202ENSMUST00000110572 4160 ntTSL 5 BASIC3.2□□□□□ -1.9
Rnf40Q3U319 Vmn1r51-205ENSMUST00000227109 4214 ntAPPRIS P1 BASIC3.2□□□□□ -1.9
Rnf40Q3U319 Olfr810-203ENSMUST00000214878 4709 ntAPPRIS P1 TSL 5 BASIC3.2□□□□□ -1.9
Rnf40Q3U319 Gm25417-201ENSMUST00000104212 131 ntBASIC3.2□□□□□ -1.9
Rnf40Q3U319 Gemin6-ps-201ENSMUST00000120444 501 ntBASIC3.2□□□□□ -1.9
Rnf40Q3U319 Gm23326-201ENSMUST00000157419 105 ntBASIC3.2□□□□□ -1.9
Rnf40Q3U319 Gm24730-201ENSMUST00000158228 117 ntBASIC3.2□□□□□ -1.9
Rnf40Q3U319 Gm23380-201ENSMUST00000158448 103 ntBASIC3.2□□□□□ -1.9
Rnf40Q3U319 Gm22140-201ENSMUST00000158745 120 ntBASIC3.2□□□□□ -1.9
Rnf40Q3U319 Gm24495-201ENSMUST00000178575 79 ntBASIC3.2□□□□□ -1.9
Rnf40Q3U319 Gm22253-201ENSMUST00000179870 79 ntBASIC3.2□□□□□ -1.9
Rnf40Q3U319 Gm27527-201ENSMUST00000183903 99 ntBASIC3.2□□□□□ -1.9
Rnf40Q3U319 Gm27392-201ENSMUST00000185041 101 ntBASIC3.2□□□□□ -1.9
Rnf40Q3U319 Gm29139-201ENSMUST00000185794 248 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
Rnf40Q3U319 Traj49-202ENSMUST00000199452 62 ntAPPRIS P1 BASIC3.2□□□□□ -1.9
Rnf40Q3U319 Gm45245-201ENSMUST00000210082 376 ntBASIC3.2□□□□□ -1.9
Rnf40Q3U319 AC174457.1-201ENSMUST00000215932 226 ntBASIC3.2□□□□□ -1.9
Rnf40Q3U319 AC132465.3-201ENSMUST00000219326 195 ntBASIC3.2□□□□□ -1.9
Rnf40Q3U319 mt-Tn-201ENSMUST00000082399 71 ntBASIC3.2□□□□□ -1.9
Rnf40Q3U319 Mir410-201ENSMUST00000083563 81 ntBASIC3.2□□□□□ -1.9
Rnf40Q3U319 Zfp988-201ENSMUST00000148762 2800 ntAPPRIS P1 TSL 5 BASIC3.2□□□□□ -1.9
Rnf40Q3U319 AC123052.1-201ENSMUST00000220604 4616 ntBASIC3.2□□□□□ -1.9
Rnf40Q3U319 AC152951.2-201ENSMUST00000218293 3587 ntBASIC3.2□□□□□ -1.9
Rnf40Q3U319 Olfr25-203ENSMUST00000214155 6479 ntAPPRIS ALT2 TSL 5 BASIC3.19□□□□□ -1.9
Rnf40Q3U319 Gm32014-202ENSMUST00000215328 4168 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
Rnf40Q3U319 Mir880-201ENSMUST00000104809 78 ntBASIC3.19□□□□□ -1.9
Rnf40Q3U319 Gm23785-201ENSMUST00000116741 96 ntBASIC3.19□□□□□ -1.9
Rnf40Q3U319 Gm23168-201ENSMUST00000157156 143 ntBASIC3.19□□□□□ -1.9
Rnf40Q3U319 Mir6379-201ENSMUST00000183392 115 ntBASIC3.19□□□□□ -1.9
Rnf40Q3U319 Igkv14-126-1-201ENSMUST00000199899 346 ntBASIC3.19□□□□□ -1.9
Rnf40Q3U319 Adgrg4-204ENSMUST00000153784 9329 ntAPPRIS P5 TSL 5 BASIC3.19□□□□□ -1.9
Rnf40Q3U319 Olfr141-201ENSMUST00000216117 2935 ntAPPRIS P1 TSL 5 BASIC3.19□□□□□ -1.9
Rnf40Q3U319 Muc16-204ENSMUST00000208663 25437 ntAPPRIS P1 TSL 5 BASIC3.18□□□□□ -1.9
Rnf40Q3U319 Olfr1222-203ENSMUST00000215816 3796 ntAPPRIS P1 TSL 5 BASIC3.18□□□□□ -1.9
Rnf40Q3U319 Zbtb37-203ENSMUST00000162226 18814 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
Rnf40Q3U319 Gm22151-201ENSMUST00000116963 58 ntBASIC3.18□□□□□ -1.9
Rnf40Q3U319 Gm25322-201ENSMUST00000122556 104 ntBASIC3.18□□□□□ -1.9
Rnf40Q3U319 Gm15404-201ENSMUST00000141811 364 ntTSL 2 BASIC3.18□□□□□ -1.9
Rnf40Q3U319 Gm24199-201ENSMUST00000157808 136 ntBASIC3.18□□□□□ -1.9
Rnf40Q3U319 Gm24668-201ENSMUST00000158935 104 ntBASIC3.18□□□□□ -1.9
Rnf40Q3U319 Gm26398-201ENSMUST00000179015 127 ntBASIC3.18□□□□□ -1.9
Rnf40Q3U319 Mir8103-201ENSMUST00000183945 107 ntBASIC3.18□□□□□ -1.9
Rnf40Q3U319 Mir6405-201ENSMUST00000184584 124 ntBASIC3.18□□□□□ -1.9
Rnf40Q3U319 Gm23299-201ENSMUST00000082708 79 ntBASIC3.18□□□□□ -1.9
Rnf40Q3U319 Vmn1r185-202ENSMUST00000226694 5656 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
Rnf40Q3U319 Olfr839-ps1-201ENSMUST00000212127 7759 ntAPPRIS P1 TSL 5 BASIC3.18□□□□□ -1.9
Rnf40Q3U319 Gm13076-201ENSMUST00000118041 204 ntBASIC3.17□□□□□ -1.9
Rnf40Q3U319 Gm11856-201ENSMUST00000118712 276 ntBASIC3.17□□□□□ -1.9
Rnf40Q3U319 Gm27686-201ENSMUST00000185123 91 ntBASIC3.17□□□□□ -1.9
Rnf40Q3U319 AC132221.1-201ENSMUST00000220577 3841 ntBASIC3.17□□□□□ -1.9
Rnf40Q3U319 Polr2k-ps-201ENSMUST00000120170 175 ntBASIC3.16□□□□□ -1.9
Rnf40Q3U319 n-R5s15-201ENSMUST00000122635 111 ntBASIC3.16□□□□□ -1.9
Rnf40Q3U319 Gm22722-201ENSMUST00000157467 132 ntBASIC3.16□□□□□ -1.9
Rnf40Q3U319 Gm22539-201ENSMUST00000158167 117 ntBASIC3.16□□□□□ -1.9
Rnf40Q3U319 Gm22833-201ENSMUST00000158292 132 ntBASIC3.16□□□□□ -1.9
Rnf40Q3U319 Gm24736-201ENSMUST00000158862 130 ntBASIC3.16□□□□□ -1.9
Rnf40Q3U319 Mir7215-201ENSMUST00000200383 51 ntBASIC3.16□□□□□ -1.9
Retrieved 100 of 76,532 protein–RNA pairs in 86.7 ms