Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Gm23320-201ENSMUST00000104462 127 ntBASIC2.3□□□□□ -2.04
Ddb1Q3U1J4 Gm6952-201ENSMUST00000118629 159 ntBASIC2.3□□□□□ -2.04
Ddb1Q3U1J4 Gm25279-201ENSMUST00000122608 133 ntBASIC2.3□□□□□ -2.04
Ddb1Q3U1J4 Gm15281-201ENSMUST00000125181 351 ntBASIC2.3□□□□□ -2.04
Ddb1Q3U1J4 Gm29604-201ENSMUST00000187176 163 ntBASIC2.3□□□□□ -2.04
Ddb1Q3U1J4 Gm23722-201ENSMUST00000083002 130 ntBASIC2.3□□□□□ -2.04
Ddb1Q3U1J4 Gm24616-201ENSMUST00000083274 139 ntBASIC2.3□□□□□ -2.04
Ddb1Q3U1J4 Gm24449-201ENSMUST00000083985 106 ntBASIC2.3□□□□□ -2.04
Ddb1Q3U1J4 Slco6c1-201ENSMUST00000027569 2747 ntAPPRIS P2 TSL 1 (best) BASIC2.3□□□□□ -2.04
Ddb1Q3U1J4 Mir669b-201ENSMUST00000102172 97 ntBASIC2.29□□□□□ -2.04
Ddb1Q3U1J4 Gm26339-201ENSMUST00000102368 99 ntBASIC2.29□□□□□ -2.04
Ddb1Q3U1J4 Gm20477-201ENSMUST00000174028 280 ntBASIC2.29□□□□□ -2.04
Ddb1Q3U1J4 Cr2-206ENSMUST00000193801 206 ntTSL 1 (best) BASIC2.29□□□□□ -2.04
Ddb1Q3U1J4 AC134601.1-201ENSMUST00000221058 109 ntBASIC2.29□□□□□ -2.04
Ddb1Q3U1J4 Gm24038-201ENSMUST00000082872 159 ntBASIC2.29□□□□□ -2.04
Ddb1Q3U1J4 Ppp4r3c-ps-201ENSMUST00000151416 2445 ntBASIC2.29□□□□□ -2.04
Ddb1Q3U1J4 Gm26082-201ENSMUST00000104070 127 ntBASIC2.28□□□□□ -2.04
Ddb1Q3U1J4 Gm23772-201ENSMUST00000104433 102 ntBASIC2.28□□□□□ -2.04
Ddb1Q3U1J4 Gm25884-201ENSMUST00000157782 62 ntBASIC2.28□□□□□ -2.04
Ddb1Q3U1J4 Gm24668-201ENSMUST00000158935 104 ntBASIC2.28□□□□□ -2.04
Ddb1Q3U1J4 Gm27894-201ENSMUST00000184177 92 ntBASIC2.28□□□□□ -2.04
Ddb1Q3U1J4 Mir7665-201ENSMUST00000184907 63 ntBASIC2.28□□□□□ -2.04
Ddb1Q3U1J4 Gm29347-201ENSMUST00000186695 449 ntTSL 3 BASIC2.28□□□□□ -2.04
Ddb1Q3U1J4 Gm18433-201ENSMUST00000192747 197 ntBASIC2.28□□□□□ -2.04
Ddb1Q3U1J4 Gm23370-201ENSMUST00000199545 130 ntBASIC2.28□□□□□ -2.04
Ddb1Q3U1J4 Snord43-201ENSMUST00000199549 108 ntBASIC2.28□□□□□ -2.04
Ddb1Q3U1J4 Gm44057-201ENSMUST00000204547 96 ntBASIC2.28□□□□□ -2.04
Ddb1Q3U1J4 Gm45027-201ENSMUST00000207081 78 ntTSL 3 BASIC2.28□□□□□ -2.04
Ddb1Q3U1J4 Gm19855-201ENSMUST00000210145 249 ntBASIC2.28□□□□□ -2.04
Ddb1Q3U1J4 AC125488.1-201ENSMUST00000219586 212 ntBASIC2.28□□□□□ -2.04
Ddb1Q3U1J4 AC129202.1-201ENSMUST00000224895 526 ntBASIC2.28□□□□□ -2.04
Ddb1Q3U1J4 Gm19194-201ENSMUST00000192015 3774 ntBASIC2.28□□□□□ -2.04
Ddb1Q3U1J4 Olfr1098-202ENSMUST00000111574 2885 ntAPPRIS P1 TSL 3 BASIC2.28□□□□□ -2.04
Ddb1Q3U1J4 Gm24375-201ENSMUST00000104397 132 ntBASIC2.27□□□□□ -2.05
Ddb1Q3U1J4 Gm22665-201ENSMUST00000158720 275 ntBASIC2.27□□□□□ -2.05
Ddb1Q3U1J4 Gm26160-201ENSMUST00000158965 63 ntBASIC2.27□□□□□ -2.05
Ddb1Q3U1J4 Mir3086-201ENSMUST00000175072 87 ntBASIC2.27□□□□□ -2.05
Ddb1Q3U1J4 Ptp4a1-206ENSMUST00000202889 135 ntTSL 2 BASIC2.27□□□□□ -2.05
Ddb1Q3U1J4 AC149294.9-201ENSMUST00000227256 164 ntBASIC2.27□□□□□ -2.05
Ddb1Q3U1J4 Gm10172-201ENSMUST00000085929 558 ntBASIC2.27□□□□□ -2.05
Ddb1Q3U1J4 Gm10813-201ENSMUST00000099936 90 ntBASIC2.27□□□□□ -2.05
Ddb1Q3U1J4 Traj43-201ENSMUST00000103699 57 ntAPPRIS P1 BASIC2.26□□□□□ -2.05
Ddb1Q3U1J4 Gm22673-201ENSMUST00000104415 131 ntBASIC2.26□□□□□ -2.05
Ddb1Q3U1J4 Gm23469-201ENSMUST00000157131 104 ntBASIC2.26□□□□□ -2.05
Ddb1Q3U1J4 Gm22967-201ENSMUST00000157956 239 ntBASIC2.26□□□□□ -2.05
Ddb1Q3U1J4 Gm23113-201ENSMUST00000158477 99 ntBASIC2.26□□□□□ -2.05
Ddb1Q3U1J4 Mir6350-201ENSMUST00000183639 105 ntBASIC2.26□□□□□ -2.05
Ddb1Q3U1J4 Mir186-201ENSMUST00000083497 71 ntBASIC2.26□□□□□ -2.05
Ddb1Q3U1J4 Mir151-201ENSMUST00000083678 68 ntBASIC2.26□□□□□ -2.05
Ddb1Q3U1J4 n-R5s183-201ENSMUST00000083939 115 ntBASIC2.26□□□□□ -2.05
Ddb1Q3U1J4 Olfr1151-202ENSMUST00000217376 2866 ntAPPRIS P1 TSL 5 BASIC2.26□□□□□ -2.05
Ddb1Q3U1J4 Gm25090-201ENSMUST00000104000 132 ntBASIC2.25□□□□□ -2.05
Ddb1Q3U1J4 Gm14937-201ENSMUST00000119709 208 ntBASIC2.25□□□□□ -2.05
Ddb1Q3U1J4 Gm15391-201ENSMUST00000147509 257 ntTSL 3 BASIC2.25□□□□□ -2.05
Ddb1Q3U1J4 Mir3968-201ENSMUST00000175355 100 ntBASIC2.25□□□□□ -2.05
Ddb1Q3U1J4 Ighv15-1-201ENSMUST00000194450 276 ntBASIC2.25□□□□□ -2.05
Ddb1Q3U1J4 Gm44490-201ENSMUST00000198566 127 ntBASIC2.25□□□□□ -2.05
Ddb1Q3U1J4 Gm24412-201ENSMUST00000083426 109 ntBASIC2.25□□□□□ -2.05
Ddb1Q3U1J4 Gm24410-201ENSMUST00000083433 107 ntBASIC2.25□□□□□ -2.05
Ddb1Q3U1J4 Mir30d-201ENSMUST00000083503 82 ntBASIC2.25□□□□□ -2.05
Ddb1Q3U1J4 Olfr791-202ENSMUST00000217228 2502 ntAPPRIS P1 TSL 5 BASIC2.25□□□□□ -2.05
Ddb1Q3U1J4 Mir1949-201ENSMUST00000157434 141 ntBASIC2.24□□□□□ -2.05
Ddb1Q3U1J4 Gm25994-201ENSMUST00000175392 101 ntBASIC2.24□□□□□ -2.05
Ddb1Q3U1J4 Gm21885-201ENSMUST00000178891 327 ntBASIC2.24□□□□□ -2.05
Ddb1Q3U1J4 Gm43865-201ENSMUST00000204721 127 ntBASIC2.24□□□□□ -2.05
Ddb1Q3U1J4 Knl1-202ENSMUST00000028802 7800 ntAPPRIS P1 TSL 5 BASIC2.24□□□□□ -2.05
Ddb1Q3U1J4 Zfp616-205ENSMUST00000178159 2964 ntAPPRIS P1 BASIC2.24□□□□□ -2.05
Ddb1Q3U1J4 Olfr1002-202ENSMUST00000215548 2295 ntAPPRIS P1 TSL 5 BASIC2.23□□□□□ -2.05
Ddb1Q3U1J4 Gm22477-201ENSMUST00000122569 316 ntBASIC2.23□□□□□ -2.05
Ddb1Q3U1J4 Gm22228-201ENSMUST00000157364 101 ntBASIC2.23□□□□□ -2.05
Ddb1Q3U1J4 Gm25658-201ENSMUST00000158472 128 ntBASIC2.23□□□□□ -2.05
Ddb1Q3U1J4 Gm25069-201ENSMUST00000175238 86 ntBASIC2.23□□□□□ -2.05
Ddb1Q3U1J4 Ighv1-23-201ENSMUST00000194625 351 ntAPPRIS P1 BASIC2.23□□□□□ -2.05
Ddb1Q3U1J4 Igkv13-54-1-201ENSMUST00000196495 303 ntBASIC2.23□□□□□ -2.05
Ddb1Q3U1J4 Gm42719-201ENSMUST00000197393 355 ntBASIC2.23□□□□□ -2.05
Ddb1Q3U1J4 Gm44028-201ENSMUST00000205205 355 ntTSL 5 BASIC2.23□□□□□ -2.05
Ddb1Q3U1J4 Mir107-201ENSMUST00000083660 87 ntBASIC2.23□□□□□ -2.05
Ddb1Q3U1J4 Mir218-1-201ENSMUST00000083669 110 ntBASIC2.23□□□□□ -2.05
Ddb1Q3U1J4 Gm25627-201ENSMUST00000084003 153 ntBASIC2.23□□□□□ -2.05
Ddb1Q3U1J4 Gm14917-201ENSMUST00000118872 2105 ntBASIC2.22□□□□□ -2.05
Ddb1Q3U1J4 Gm23656-201ENSMUST00000122626 112 ntBASIC2.22□□□□□ -2.05
Ddb1Q3U1J4 Gm44481-201ENSMUST00000197288 84 ntBASIC2.22□□□□□ -2.05
Ddb1Q3U1J4 Gm44339-201ENSMUST00000200598 84 ntBASIC2.22□□□□□ -2.05
Ddb1Q3U1J4 Gm44921-201ENSMUST00000205290 301 ntBASIC2.22□□□□□ -2.05
Ddb1Q3U1J4 Gm24148-201ENSMUST00000082762 80 ntBASIC2.22□□□□□ -2.05
Ddb1Q3U1J4 Gm14327-201ENSMUST00000099001 192 ntTSL 5 BASIC2.22□□□□□ -2.05
Ddb1Q3U1J4 Olfr1450-202ENSMUST00000213587 2872 ntAPPRIS P1 TSL 5 BASIC2.22□□□□□ -2.05
Ddb1Q3U1J4 Gm29106-201ENSMUST00000186264 4012 ntAPPRIS P1 TSL 5 BASIC2.21□□□□□ -2.05
Ddb1Q3U1J4 AC133934.2-201ENSMUST00000221729 4129 ntBASIC2.21□□□□□ -2.06
Ddb1Q3U1J4 Gpr174-207ENSMUST00000178838 4955 ntAPPRIS P1 TSL 2 BASIC2.21□□□□□ -2.06
Ddb1Q3U1J4 Gm25274-201ENSMUST00000104296 135 ntBASIC2.21□□□□□ -2.06
Ddb1Q3U1J4 Gm23044-201ENSMUST00000157891 100 ntBASIC2.21□□□□□ -2.06
Ddb1Q3U1J4 Gm22946-201ENSMUST00000158558 82 ntBASIC2.21□□□□□ -2.06
Ddb1Q3U1J4 Gm22775-201ENSMUST00000177630 120 ntBASIC2.21□□□□□ -2.06
Ddb1Q3U1J4 Gm23569-201ENSMUST00000180120 120 ntBASIC2.21□□□□□ -2.06
Ddb1Q3U1J4 Gm24261-201ENSMUST00000083744 104 ntBASIC2.21□□□□□ -2.06
Ddb1Q3U1J4 Vmn1r75-203ENSMUST00000226855 6548 ntAPPRIS P2 BASIC2.21□□□□□ -2.06
Ddb1Q3U1J4 Gm23651-201ENSMUST00000116755 120 ntBASIC2.2□□□□□ -2.06
Ddb1Q3U1J4 Rhox11-ps3-201ENSMUST00000121166 233 ntBASIC2.2□□□□□ -2.06
Ddb1Q3U1J4 Gm25323-201ENSMUST00000122555 103 ntBASIC2.2□□□□□ -2.06
Retrieved 100 of 76,532 protein–RNA pairs in 130.7 ms