Protein–RNA interactions for Protein: Q9JKE1

Trem3, TREM-3, mousemouse

Predictions only

Length 183 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trem3Q9JKE1 Smr2-204ENSMUST00000199635 680 ntAPPRIS ALT2 TSL 1 (best) BASIC-0.33□□□□□ -2.46
Trem3Q9JKE1 Gm45544-201ENSMUST00000211130 88 ntBASIC-0.33□□□□□ -2.46
Trem3Q9JKE1 Rny1-201ENSMUST00000083767 112 ntBASIC-0.33□□□□□ -2.46
Trem3Q9JKE1 Gm25507-201ENSMUST00000116981 144 ntBASIC-0.34□□□□□ -2.46
Trem3Q9JKE1 Gm10722-201ENSMUST00000151376 651 ntAPPRIS P1 TSL 5 BASIC-0.34□□□□□ -2.46
Trem3Q9JKE1 Gm24241-201ENSMUST00000157787 145 ntBASIC-0.34□□□□□ -2.46
Trem3Q9JKE1 Mir6350-201ENSMUST00000183639 105 ntBASIC-0.34□□□□□ -2.46
Trem3Q9JKE1 Gm28669-201ENSMUST00000188400 100 ntBASIC-0.34□□□□□ -2.46
Trem3Q9JKE1 Gm28217-201ENSMUST00000188613 648 ntTSL 5 BASIC-0.34□□□□□ -2.46
Trem3Q9JKE1 Gm18291-201ENSMUST00000190791 301 ntBASIC-0.34□□□□□ -2.46
Trem3Q9JKE1 Gm37468-201ENSMUST00000194767 854 ntTSL 1 (best) BASIC-0.34□□□□□ -2.46
Trem3Q9JKE1 Gm43472-201ENSMUST00000200175 154 ntBASIC-0.34□□□□□ -2.46
Trem3Q9JKE1 AC141438.3-201ENSMUST00000215632 202 ntBASIC-0.34□□□□□ -2.46
Trem3Q9JKE1 AC116319.1-201ENSMUST00000227765 222 ntBASIC-0.34□□□□□ -2.46
Trem3Q9JKE1 Gm24342-201ENSMUST00000103907 104 ntBASIC-0.35□□□□□ -2.47
Trem3Q9JKE1 Gm24555-201ENSMUST00000104548 124 ntBASIC-0.35□□□□□ -2.47
Trem3Q9JKE1 Vmn1r-ps116-201ENSMUST00000121544 292 ntBASIC-0.35□□□□□ -2.47
Trem3Q9JKE1 Gm14766-201ENSMUST00000121689 367 ntBASIC-0.35□□□□□ -2.47
Trem3Q9JKE1 Gm23375-201ENSMUST00000175407 83 ntBASIC-0.35□□□□□ -2.47
Trem3Q9JKE1 Gm10717-205ENSMUST00000177601 645 ntAPPRIS ALT2 TSL 5 BASIC-0.35□□□□□ -2.47
Trem3Q9JKE1 Gm24415-201ENSMUST00000180218 107 ntBASIC-0.35□□□□□ -2.47
Trem3Q9JKE1 Mir6377-201ENSMUST00000183760 114 ntBASIC-0.35□□□□□ -2.47
Trem3Q9JKE1 Mir6390-201ENSMUST00000184405 129 ntBASIC-0.35□□□□□ -2.47
Trem3Q9JKE1 Mir7j-201ENSMUST00000184427 122 ntBASIC-0.35□□□□□ -2.47
Trem3Q9JKE1 Gm45489-201ENSMUST00000211753 443 ntTSL 3 BASIC-0.35□□□□□ -2.47
Trem3Q9JKE1 Gm24962-201ENSMUST00000157917 109 ntBASIC-0.36□□□□□ -2.47
Trem3Q9JKE1 Mir100-201ENSMUST00000175270 80 ntBASIC-0.36□□□□□ -2.47
Trem3Q9JKE1 Ranbp2-ps2-201ENSMUST00000184379 370 ntBASIC-0.36□□□□□ -2.47
Trem3Q9JKE1 Gm28438-201ENSMUST00000188299 345 ntBASIC-0.36□□□□□ -2.47
Trem3Q9JKE1 Gm36946-201ENSMUST00000192706 435 ntBASIC-0.36□□□□□ -2.47
Trem3Q9JKE1 Gm44328-201ENSMUST00000199331 75 ntBASIC-0.36□□□□□ -2.47
Trem3Q9JKE1 Gm44085-201ENSMUST00000205056 372 ntTSL 3 BASIC-0.36□□□□□ -2.47
Trem3Q9JKE1 Gm45197-201ENSMUST00000205288 151 ntBASIC-0.36□□□□□ -2.47
Trem3Q9JKE1 Gm18113-201ENSMUST00000220630 303 ntBASIC-0.36□□□□□ -2.47
Trem3Q9JKE1 mt-Nd3-201ENSMUST00000082411 348 ntAPPRIS P1 BASIC-0.36□□□□□ -2.47
Trem3Q9JKE1 Gm23492-201ENSMUST00000116837 115 ntBASIC-0.37□□□□□ -2.47
Trem3Q9JKE1 Gm13518-201ENSMUST00000120018 233 ntBASIC-0.37□□□□□ -2.47
Trem3Q9JKE1 Gm25781-201ENSMUST00000122527 84 ntBASIC-0.37□□□□□ -2.47
Trem3Q9JKE1 Gm22883-201ENSMUST00000157376 106 ntBASIC-0.37□□□□□ -2.47
Trem3Q9JKE1 Gm25494-201ENSMUST00000158143 100 ntBASIC-0.37□□□□□ -2.47
Trem3Q9JKE1 Gm22327-201ENSMUST00000158899 108 ntBASIC-0.37□□□□□ -2.47
Trem3Q9JKE1 Gm27957-201ENSMUST00000184054 127 ntBASIC-0.37□□□□□ -2.47
Trem3Q9JKE1 Gm36546-201ENSMUST00000206372 230 ntTSL 5 BASIC-0.37□□□□□ -2.47
Trem3Q9JKE1 Gm45402-201ENSMUST00000211796 223 ntBASIC-0.37□□□□□ -2.47
Trem3Q9JKE1 AC114916.1-201ENSMUST00000228465 494 ntBASIC-0.37□□□□□ -2.47
Trem3Q9JKE1 Gm24460-201ENSMUST00000082731 106 ntBASIC-0.37□□□□□ -2.47
Trem3Q9JKE1 Gm22294-201ENSMUST00000083308 104 ntBASIC-0.37□□□□□ -2.47
Trem3Q9JKE1 Gm25894-201ENSMUST00000083458 75 ntBASIC-0.37□□□□□ -2.47
Trem3Q9JKE1 Gm24116-201ENSMUST00000103975 107 ntBASIC-0.38□□□□□ -2.47
Trem3Q9JKE1 Gm11386-201ENSMUST00000117761 347 ntBASIC-0.38□□□□□ -2.47
Trem3Q9JKE1 Gm25314-201ENSMUST00000178810 79 ntBASIC-0.38□□□□□ -2.47
Trem3Q9JKE1 Gm28270-201ENSMUST00000188550 109 ntBASIC-0.38□□□□□ -2.47
Trem3Q9JKE1 Gm28328-201ENSMUST00000188869 109 ntBASIC-0.38□□□□□ -2.47
Trem3Q9JKE1 Gm29047-201ENSMUST00000189816 108 ntBASIC-0.38□□□□□ -2.47
Trem3Q9JKE1 Gm36189-201ENSMUST00000204113 523 ntBASIC-0.38□□□□□ -2.47
Trem3Q9JKE1 Olfr1435-ps1-201ENSMUST00000207773 249 ntBASIC-0.38□□□□□ -2.47
Trem3Q9JKE1 AC098718.2-201ENSMUST00000226822 285 ntBASIC-0.38□□□□□ -2.47
Trem3Q9JKE1 Mir214-201ENSMUST00000083582 110 ntBASIC-0.38□□□□□ -2.47
Trem3Q9JKE1 Gm22753-201ENSMUST00000083657 107 ntBASIC-0.38□□□□□ -2.47
Trem3Q9JKE1 Gm26108-201ENSMUST00000083973 191 ntBASIC-0.38□□□□□ -2.47
Trem3Q9JKE1 Gm6358-201ENSMUST00000089101 156 ntAPPRIS ALT2 BASIC-0.38□□□□□ -2.47
Trem3Q9JKE1 Gm23531-201ENSMUST00000104567 68 ntBASIC-0.39□□□□□ -2.47
Trem3Q9JKE1 Gm12584-201ENSMUST00000117109 1105 ntBASIC-0.39□□□□□ -2.47
Trem3Q9JKE1 Gm13341-201ENSMUST00000120780 672 ntBASIC-0.39□□□□□ -2.47
Trem3Q9JKE1 Gm14671-201ENSMUST00000121790 262 ntBASIC-0.39□□□□□ -2.47
Trem3Q9JKE1 Gm23212-201ENSMUST00000122718 60 ntBASIC-0.39□□□□□ -2.47
Trem3Q9JKE1 Gm26415-201ENSMUST00000157673 292 ntBASIC-0.39□□□□□ -2.47
Trem3Q9JKE1 Gm22942-201ENSMUST00000158563 124 ntBASIC-0.39□□□□□ -2.47
Trem3Q9JKE1 Gm12771-201ENSMUST00000120246 135 ntBASIC-0.4□□□□□ -2.47
Trem3Q9JKE1 2210418O10Rik-202ENSMUST00000135430 195 ntTSL 5 BASIC-0.4□□□□□ -2.47
Trem3Q9JKE1 1700047A11Rik-202ENSMUST00000153552 622 ntTSL 1 (best) BASIC-0.4□□□□□ -2.47
Trem3Q9JKE1 Gm45617-201ENSMUST00000211132 209 ntBASIC-0.4□□□□□ -2.47
Trem3Q9JKE1 CT009723.2-201ENSMUST00000215702 124 ntTSL 5 BASIC-0.4□□□□□ -2.47
Trem3Q9JKE1 Gm23404-201ENSMUST00000082543 97 ntBASIC-0.4□□□□□ -2.47
Trem3Q9JKE1 Gm43885-201ENSMUST00000204928 2542 ntBASIC-0.41□□□□□ -2.47
Trem3Q9JKE1 Gm22818-201ENSMUST00000157446 104 ntBASIC-0.41□□□□□ -2.48
Trem3Q9JKE1 Gm23101-201ENSMUST00000157550 137 ntBASIC-0.41□□□□□ -2.48
Trem3Q9JKE1 Gm43487-201ENSMUST00000200331 1031 ntBASIC-0.41□□□□□ -2.48
Trem3Q9JKE1 Gm44726-201ENSMUST00000203427 217 ntBASIC-0.41□□□□□ -2.48
Trem3Q9JKE1 Gm44057-201ENSMUST00000204547 96 ntBASIC-0.41□□□□□ -2.48
Trem3Q9JKE1 AC129085.1-201ENSMUST00000225263 165 ntBASIC-0.41□□□□□ -2.48
Trem3Q9JKE1 Gm23142-201ENSMUST00000101848 105 ntBASIC-0.42□□□□□ -2.48
Trem3Q9JKE1 Gm26240-201ENSMUST00000101893 105 ntBASIC-0.42□□□□□ -2.48
Trem3Q9JKE1 Gm26395-201ENSMUST00000104094 132 ntBASIC-0.42□□□□□ -2.48
Trem3Q9JKE1 Gm25909-201ENSMUST00000157619 121 ntBASIC-0.42□□□□□ -2.48
Trem3Q9JKE1 Gm24853-201ENSMUST00000158026 121 ntBASIC-0.42□□□□□ -2.48
Trem3Q9JKE1 Gm24728-201ENSMUST00000158226 125 ntBASIC-0.42□□□□□ -2.48
Trem3Q9JKE1 Gm22087-201ENSMUST00000158339 88 ntBASIC-0.42□□□□□ -2.48
Trem3Q9JKE1 4930555M17Rik-201ENSMUST00000176666 402 ntTSL 1 (best) BASIC-0.42□□□□□ -2.48
Trem3Q9JKE1 Gm26180-201ENSMUST00000179942 107 ntBASIC-0.42□□□□□ -2.48
Trem3Q9JKE1 Gm26379-202ENSMUST00000200225 132 ntBASIC-0.42□□□□□ -2.48
Trem3Q9JKE1 Gm25579-201ENSMUST00000083407 106 ntBASIC-0.42□□□□□ -2.48
Trem3Q9JKE1 Gm22771-201ENSMUST00000104449 91 ntBASIC-0.43□□□□□ -2.48
Trem3Q9JKE1 Gm13246-201ENSMUST00000120994 315 ntBASIC-0.43□□□□□ -2.48
Trem3Q9JKE1 Gm24594-201ENSMUST00000122502 99 ntBASIC-0.43□□□□□ -2.48
Trem3Q9JKE1 Gm24629-201ENSMUST00000122762 89 ntBASIC-0.43□□□□□ -2.48
Trem3Q9JKE1 Gm24847-201ENSMUST00000158032 108 ntBASIC-0.43□□□□□ -2.48
Trem3Q9JKE1 Gm22088-201ENSMUST00000158341 117 ntBASIC-0.43□□□□□ -2.48
Trem3Q9JKE1 Gm21903-201ENSMUST00000178039 90 ntAPPRIS P1 TSL 5 BASIC-0.43□□□□□ -2.48
Trem3Q9JKE1 Gm37330-201ENSMUST00000192606 153 ntBASIC-0.43□□□□□ -2.48
Retrieved 100 of 76,532 protein–RNA pairs in 140.2 ms