Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Gm24131-201ENSMUST00000158539 107 ntBASIC1.82□□□□□ -2.12
ShhQ62226 Gm23342-201ENSMUST00000158958 115 ntBASIC1.82□□□□□ -2.12
ShhQ62226 Gm26160-201ENSMUST00000158965 63 ntBASIC1.82□□□□□ -2.12
ShhQ62226 Gm25994-201ENSMUST00000175392 101 ntBASIC1.82□□□□□ -2.12
ShhQ62226 Gm24106-201ENSMUST00000175498 127 ntBASIC1.82□□□□□ -2.12
ShhQ62226 Gm42719-201ENSMUST00000197393 355 ntBASIC1.82□□□□□ -2.12
ShhQ62226 Gm44028-201ENSMUST00000205205 355 ntTSL 5 BASIC1.82□□□□□ -2.12
ShhQ62226 Gm40604-202ENSMUST00000219541 522 ntTSL 5 BASIC1.82□□□□□ -2.12
ShhQ62226 Mir218-1-201ENSMUST00000083669 110 ntBASIC1.82□□□□□ -2.12
ShhQ62226 Gm14917-201ENSMUST00000118872 2105 ntBASIC1.82□□□□□ -2.12
ShhQ62226 Gm29106-201ENSMUST00000186264 4012 ntAPPRIS P1 TSL 5 BASIC1.81□□□□□ -2.12
ShhQ62226 Gm26345-201ENSMUST00000157534 120 ntBASIC1.81□□□□□ -2.12
ShhQ62226 Gm22842-201ENSMUST00000157709 118 ntBASIC1.81□□□□□ -2.12
ShhQ62226 Gm22557-201ENSMUST00000157804 102 ntBASIC1.81□□□□□ -2.12
ShhQ62226 Gm23113-201ENSMUST00000158477 99 ntBASIC1.81□□□□□ -2.12
ShhQ62226 Gtpbp4-ps1-201ENSMUST00000184732 249 ntBASIC1.81□□□□□ -2.12
ShhQ62226 AC134601.1-201ENSMUST00000221058 109 ntBASIC1.81□□□□□ -2.12
ShhQ62226 Olfr1098-202ENSMUST00000111574 2885 ntAPPRIS P1 TSL 3 BASIC1.8□□□□□ -2.12
ShhQ62226 Olfr1044-202ENSMUST00000215171 3266 ntAPPRIS P1 TSL 5 BASIC1.8□□□□□ -2.12
ShhQ62226 Gm6952-201ENSMUST00000118629 159 ntBASIC1.8□□□□□ -2.12
ShhQ62226 Gm23656-201ENSMUST00000122626 112 ntBASIC1.8□□□□□ -2.12
ShhQ62226 Mir1931-201ENSMUST00000158589 119 ntBASIC1.8□□□□□ -2.12
ShhQ62226 Gm17528-201ENSMUST00000171026 239 ntBASIC1.8□□□□□ -2.12
ShhQ62226 Mir7016-201ENSMUST00000184308 72 ntBASIC1.8□□□□□ -2.12
ShhQ62226 Gm27443-201ENSMUST00000184660 98 ntBASIC1.8□□□□□ -2.12
ShhQ62226 Gm44325-201ENSMUST00000196757 77 ntBASIC1.8□□□□□ -2.12
ShhQ62226 Gm44921-201ENSMUST00000205290 301 ntBASIC1.8□□□□□ -2.12
ShhQ62226 Gm44922-201ENSMUST00000206690 90 ntBASIC1.8□□□□□ -2.12
ShhQ62226 Gm25627-201ENSMUST00000084003 153 ntBASIC1.8□□□□□ -2.12
ShhQ62226 Gm14405-201ENSMUST00000117808 2330 ntBASIC1.8□□□□□ -2.12
ShhQ62226 Gm33962-201ENSMUST00000182643 2592 ntBASIC1.8□□□□□ -2.12
ShhQ62226 Gm19194-201ENSMUST00000192015 3774 ntBASIC1.8□□□□□ -2.12
ShhQ62226 Olfr1218-204ENSMUST00000215054 3875 ntAPPRIS P1 TSL 5 BASIC1.79□□□□□ -2.12
ShhQ62226 Olfr1448-203ENSMUST00000213713 4336 ntAPPRIS P1 TSL 5 BASIC1.79□□□□□ -2.12
ShhQ62226 Mir6350-201ENSMUST00000183639 105 ntBASIC1.79□□□□□ -2.12
ShhQ62226 Gm44938-201ENSMUST00000208614 427 ntBASIC1.79□□□□□ -2.12
ShhQ62226 AC120540.2-201ENSMUST00000221716 387 ntBASIC1.79□□□□□ -2.12
ShhQ62226 Trdn-201ENSMUST00000095762 4514 ntAPPRIS P2 TSL 5 BASIC1.79□□□□□ -2.12
ShhQ62226 Fau-ps1-201ENSMUST00000119675 252 ntBASIC1.78□□□□□ -2.12
ShhQ62226 Gm22477-201ENSMUST00000122569 316 ntBASIC1.78□□□□□ -2.12
ShhQ62226 Mir7683-201ENSMUST00000183842 61 ntBASIC1.78□□□□□ -2.12
ShhQ62226 Gm45489-201ENSMUST00000211753 443 ntTSL 3 BASIC1.78□□□□□ -2.12
ShhQ62226 AC160863.1-201ENSMUST00000218412 317 ntBASIC1.78□□□□□ -2.12
ShhQ62226 Gm24261-201ENSMUST00000083744 104 ntBASIC1.78□□□□□ -2.12
ShhQ62226 Gm14327-201ENSMUST00000099001 192 ntTSL 5 BASIC1.78□□□□□ -2.12
ShhQ62226 Olfr188-ps1-201ENSMUST00000205766 4706 ntTSL 5 BASIC1.78□□□□□ -2.12
ShhQ62226 Olfr711-203ENSMUST00000216335 4724 ntAPPRIS P1 TSL 5 BASIC1.78□□□□□ -2.13
ShhQ62226 Gm26080-201ENSMUST00000104069 131 ntBASIC1.77□□□□□ -2.13
ShhQ62226 Gm16328-201ENSMUST00000126985 196 ntBASIC1.77□□□□□ -2.13
ShhQ62226 Gm23898-201ENSMUST00000158111 103 ntBASIC1.77□□□□□ -2.13
ShhQ62226 Gm25716-201ENSMUST00000158628 104 ntBASIC1.77□□□□□ -2.13
ShhQ62226 Gm26097-201ENSMUST00000179642 93 ntBASIC1.77□□□□□ -2.13
ShhQ62226 Gm38364-201ENSMUST00000191814 179 ntBASIC1.77□□□□□ -2.13
ShhQ62226 Gm43865-201ENSMUST00000204721 127 ntBASIC1.77□□□□□ -2.13
ShhQ62226 Snora3-201ENSMUST00000083082 132 ntBASIC1.77□□□□□ -2.13
ShhQ62226 Olfr1450-202ENSMUST00000213587 2872 ntAPPRIS P1 TSL 5 BASIC1.77□□□□□ -2.13
ShhQ62226 Gm22148-201ENSMUST00000104445 107 ntBASIC1.76□□□□□ -2.13
ShhQ62226 Gm24984-201ENSMUST00000104454 133 ntBASIC1.76□□□□□ -2.13
ShhQ62226 Mir3096-201ENSMUST00000116685 71 ntBASIC1.76□□□□□ -2.13
ShhQ62226 Rpl30-ps5-201ENSMUST00000117104 361 ntBASIC1.76□□□□□ -2.13
ShhQ62226 Gm25323-201ENSMUST00000122555 103 ntBASIC1.76□□□□□ -2.13
ShhQ62226 Gm12869-201ENSMUST00000156265 344 ntTSL 2 BASIC1.76□□□□□ -2.13
ShhQ62226 Gm22606-201ENSMUST00000158290 103 ntBASIC1.76□□□□□ -2.13
ShhQ62226 Gm24634-201ENSMUST00000158672 107 ntBASIC1.76□□□□□ -2.13
ShhQ62226 Gm22286-201ENSMUST00000179708 107 ntBASIC1.76□□□□□ -2.13
ShhQ62226 C920009B18Rik-204ENSMUST00000181733 123 ntBASIC1.76□□□□□ -2.13
ShhQ62226 Gm27326-201ENSMUST00000183504 95 ntBASIC1.76□□□□□ -2.13
ShhQ62226 Mir21b-201ENSMUST00000184317 108 ntBASIC1.76□□□□□ -2.13
ShhQ62226 Gm43749-201ENSMUST00000199345 352 ntBASIC1.76□□□□□ -2.13
ShhQ62226 AC125488.1-201ENSMUST00000219586 212 ntBASIC1.76□□□□□ -2.13
ShhQ62226 Gm22683-201ENSMUST00000082854 137 ntBASIC1.76□□□□□ -2.13
ShhQ62226 Mir34a-201ENSMUST00000083559 102 ntBASIC1.76□□□□□ -2.13
ShhQ62226 Gm25828-201ENSMUST00000157087 95 ntBASIC1.75□□□□□ -2.13
ShhQ62226 Gm26412-201ENSMUST00000157666 55 ntBASIC1.75□□□□□ -2.13
ShhQ62226 Gm26864-201ENSMUST00000181346 156 ntBASIC1.75□□□□□ -2.13
ShhQ62226 Mir7679-201ENSMUST00000183379 63 ntBASIC1.75□□□□□ -2.13
ShhQ62226 Mir6901-201ENSMUST00000185062 62 ntBASIC1.75□□□□□ -2.13
ShhQ62226 AC164612.2-202ENSMUST00000216314 253 ntBASIC1.75□□□□□ -2.13
ShhQ62226 AC129085.1-201ENSMUST00000225263 165 ntBASIC1.75□□□□□ -2.13
ShhQ62226 Gm22673-201ENSMUST00000104415 131 ntBASIC1.74□□□□□ -2.13
ShhQ62226 Gm22850-201ENSMUST00000157714 82 ntBASIC1.74□□□□□ -2.13
ShhQ62226 Gm24770-201ENSMUST00000158505 92 ntBASIC1.74□□□□□ -2.13
ShhQ62226 Snord87-201ENSMUST00000175437 87 ntBASIC1.74□□□□□ -2.13
ShhQ62226 Mir6995-201ENSMUST00000183658 71 ntBASIC1.74□□□□□ -2.13
ShhQ62226 Gm28537-201ENSMUST00000189026 315 ntBASIC1.74□□□□□ -2.13
ShhQ62226 Gm29631-201ENSMUST00000191065 315 ntBASIC1.74□□□□□ -2.13
ShhQ62226 AC192091.2-201ENSMUST00000217869 117 ntBASIC1.74□□□□□ -2.13
ShhQ62226 AC129085.5-201ENSMUST00000225468 400 ntBASIC1.74□□□□□ -2.13
ShhQ62226 Gm22727-201ENSMUST00000158090 116 ntBASIC1.73□□□□□ -2.13
ShhQ62226 Gm25658-201ENSMUST00000158472 128 ntBASIC1.73□□□□□ -2.13
ShhQ62226 Mir7678-201ENSMUST00000185076 71 ntBASIC1.73□□□□□ -2.13
ShhQ62226 Gm28669-201ENSMUST00000188400 100 ntBASIC1.73□□□□□ -2.13
ShhQ62226 Gm42623-201ENSMUST00000197225 379 ntBASIC1.73□□□□□ -2.13
ShhQ62226 Gm43911-201ENSMUST00000203097 76 ntBASIC1.73□□□□□ -2.13
ShhQ62226 Gm25081-201ENSMUST00000082534 108 ntBASIC1.73□□□□□ -2.13
ShhQ62226 Mir488-201ENSMUST00000093595 109 ntBASIC1.73□□□□□ -2.13
ShhQ62226 Olfr1222-203ENSMUST00000215816 3796 ntAPPRIS P1 TSL 5 BASIC1.73□□□□□ -2.13
ShhQ62226 Gm44177-201ENSMUST00000204338 2667 ntBASIC1.73□□□□□ -2.13
ShhQ62226 Gm6377-201ENSMUST00000060013 2793 ntAPPRIS P1 TSL 1 (best) BASIC1.72□□□□□ -2.13
ShhQ62226 Gm22003-201ENSMUST00000101885 107 ntBASIC1.72□□□□□ -2.13
Retrieved 100 of 76,532 protein–RNA pairs in 89.2 ms