Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Gm25825-201ENSMUST00000157091 124 ntBASIC2.4□□□□□ -2.03
Ddb1Q3U1J4 Gm23854-201ENSMUST00000158378 108 ntBASIC2.4□□□□□ -2.03
Ddb1Q3U1J4 Gm16546-201ENSMUST00000159442 355 ntBASIC2.4□□□□□ -2.03
Ddb1Q3U1J4 Gm23922-201ENSMUST00000178792 79 ntBASIC2.4□□□□□ -2.03
Ddb1Q3U1J4 Gm24657-201ENSMUST00000180085 79 ntBASIC2.4□□□□□ -2.03
Ddb1Q3U1J4 Gm22996-201ENSMUST00000180236 79 ntBASIC2.4□□□□□ -2.03
Ddb1Q3U1J4 Gm27979-201ENSMUST00000185126 56 ntBASIC2.4□□□□□ -2.03
Ddb1Q3U1J4 Gm40604-202ENSMUST00000219541 522 ntTSL 5 BASIC2.4□□□□□ -2.03
Ddb1Q3U1J4 AC098718.1-201ENSMUST00000226166 175 ntBASIC2.4□□□□□ -2.03
Ddb1Q3U1J4 AC127371.3-201ENSMUST00000228129 415 ntBASIC2.4□□□□□ -2.03
Ddb1Q3U1J4 Gm25788-201ENSMUST00000082721 131 ntBASIC2.4□□□□□ -2.03
Ddb1Q3U1J4 Gm22297-201ENSMUST00000083312 106 ntBASIC2.4□□□□□ -2.03
Ddb1Q3U1J4 Mir429-201ENSMUST00000083493 83 ntBASIC2.4□□□□□ -2.03
Ddb1Q3U1J4 Adgrg4-205ENSMUST00000154818 8857 ntAPPRIS ALT2 TSL 5 BASIC2.4□□□□□ -2.03
Ddb1Q3U1J4 Olfr1044-202ENSMUST00000215171 3266 ntAPPRIS P1 TSL 5 BASIC2.4□□□□□ -2.03
Ddb1Q3U1J4 Gm22557-201ENSMUST00000157804 102 ntBASIC2.39□□□□□ -2.03
Ddb1Q3U1J4 Mir1927-201ENSMUST00000158579 109 ntBASIC2.39□□□□□ -2.03
Ddb1Q3U1J4 Gm16404-201ENSMUST00000177739 468 ntBASIC2.39□□□□□ -2.03
Ddb1Q3U1J4 Gm5900-201ENSMUST00000179862 375 ntBASIC2.39□□□□□ -2.03
Ddb1Q3U1J4 Gm14598-201ENSMUST00000180109 468 ntBASIC2.39□□□□□ -2.03
Ddb1Q3U1J4 Gm14625-201ENSMUST00000180231 468 ntBASIC2.39□□□□□ -2.03
Ddb1Q3U1J4 Gm27326-201ENSMUST00000183504 95 ntBASIC2.39□□□□□ -2.03
Ddb1Q3U1J4 Gm28912-201ENSMUST00000189001 234 ntBASIC2.39□□□□□ -2.03
Ddb1Q3U1J4 Mir3069-201ENSMUST00000198802 65 ntBASIC2.39□□□□□ -2.03
Ddb1Q3U1J4 Trav5-2-201ENSMUST00000199855 280 ntBASIC2.39□□□□□ -2.03
Ddb1Q3U1J4 Gm44052-201ENSMUST00000203382 396 ntBASIC2.39□□□□□ -2.03
Ddb1Q3U1J4 Gm5010-201ENSMUST00000213131 260 ntBASIC2.39□□□□□ -2.03
Ddb1Q3U1J4 Gm24929-201ENSMUST00000083403 139 ntBASIC2.39□□□□□ -2.03
Ddb1Q3U1J4 Mir301-201ENSMUST00000083655 86 ntBASIC2.39□□□□□ -2.03
Ddb1Q3U1J4 Gm24276-201ENSMUST00000102181 110 ntBASIC2.38□□□□□ -2.03
Ddb1Q3U1J4 2210417A02Rik-201ENSMUST00000150265 550 ntTSL 1 (best) BASIC2.38□□□□□ -2.03
Ddb1Q3U1J4 Gm26291-201ENSMUST00000158889 137 ntBASIC2.38□□□□□ -2.03
Ddb1Q3U1J4 Mir7039-201ENSMUST00000183852 85 ntBASIC2.38□□□□□ -2.03
Ddb1Q3U1J4 AC192091.2-201ENSMUST00000217869 117 ntBASIC2.38□□□□□ -2.03
Ddb1Q3U1J4 Gm43484-201ENSMUST00000198333 5966 ntBASIC2.38□□□□□ -2.03
Ddb1Q3U1J4 Traj20-201ENSMUST00000103721 58 ntAPPRIS P1 BASIC2.37□□□□□ -2.03
Ddb1Q3U1J4 Gm24263-201ENSMUST00000104059 107 ntBASIC2.37□□□□□ -2.03
Ddb1Q3U1J4 Mir1298-201ENSMUST00000116681 98 ntBASIC2.37□□□□□ -2.03
Ddb1Q3U1J4 Gm23390-201ENSMUST00000157393 106 ntBASIC2.37□□□□□ -2.03
Ddb1Q3U1J4 Gm25368-201ENSMUST00000158847 131 ntBASIC2.37□□□□□ -2.03
Ddb1Q3U1J4 Gm26337-201ENSMUST00000178000 79 ntBASIC2.37□□□□□ -2.03
Ddb1Q3U1J4 Gm27851-201ENSMUST00000183529 63 ntBASIC2.37□□□□□ -2.03
Ddb1Q3U1J4 Gm37693-201ENSMUST00000194562 234 ntBASIC2.37□□□□□ -2.03
Ddb1Q3U1J4 Mir7021-201ENSMUST00000197026 63 ntBASIC2.37□□□□□ -2.03
Ddb1Q3U1J4 Mir7217-201ENSMUST00000200304 62 ntBASIC2.37□□□□□ -2.03
Ddb1Q3U1J4 Mir148b-201ENSMUST00000083626 97 ntBASIC2.37□□□□□ -2.03
Ddb1Q3U1J4 AC160984.1-201ENSMUST00000225855 3154 ntBASIC2.37□□□□□ -2.03
Ddb1Q3U1J4 Gm13922-201ENSMUST00000119505 156 ntBASIC2.36□□□□□ -2.03
Ddb1Q3U1J4 Zfp969-202ENSMUST00000131041 252 ntTSL 2 BASIC2.36□□□□□ -2.03
Ddb1Q3U1J4 Gm12869-201ENSMUST00000156265 344 ntTSL 2 BASIC2.36□□□□□ -2.03
Ddb1Q3U1J4 Gm22083-201ENSMUST00000157586 102 ntBASIC2.36□□□□□ -2.03
Ddb1Q3U1J4 Gm22349-201ENSMUST00000157864 107 ntBASIC2.36□□□□□ -2.03
Ddb1Q3U1J4 Trav7-6-202ENSMUST00000184687 275 ntAPPRIS P1 BASIC2.36□□□□□ -2.03
Ddb1Q3U1J4 AC117232.1-201ENSMUST00000197964 119 ntBASIC2.36□□□□□ -2.03
Ddb1Q3U1J4 Olfr880-ps1-201ENSMUST00000212344 229 ntBASIC2.36□□□□□ -2.03
Ddb1Q3U1J4 Gm18502-201ENSMUST00000218679 199 ntBASIC2.36□□□□□ -2.03
Ddb1Q3U1J4 Mir300-201ENSMUST00000083485 79 ntBASIC2.36□□□□□ -2.03
Ddb1Q3U1J4 Snora69-201ENSMUST00000083708 131 ntBASIC2.36□□□□□ -2.03
Ddb1Q3U1J4 Gm10203-201ENSMUST00000087348 198 ntAPPRIS P1 TSL 5 BASIC2.36□□□□□ -2.03
Ddb1Q3U1J4 AC153966.1-201ENSMUST00000220106 3764 ntBASIC2.36□□□□□ -2.03
Ddb1Q3U1J4 Olfr307-202ENSMUST00000213705 4498 ntAPPRIS P1 TSL 5 BASIC2.36□□□□□ -2.03
Ddb1Q3U1J4 Olfr921-203ENSMUST00000217114 4120 ntAPPRIS P1 TSL 2 BASIC2.36□□□□□ -2.03
Ddb1Q3U1J4 Gm14536-201ENSMUST00000118324 138 ntBASIC2.35□□□□□ -2.03
Ddb1Q3U1J4 Gm15027-201ENSMUST00000120922 138 ntBASIC2.35□□□□□ -2.03
Ddb1Q3U1J4 n-R5s187-201ENSMUST00000122769 111 ntBASIC2.35□□□□□ -2.03
Ddb1Q3U1J4 Gm24902-201ENSMUST00000158126 123 ntBASIC2.35□□□□□ -2.03
Ddb1Q3U1J4 Gm24634-201ENSMUST00000158672 107 ntBASIC2.35□□□□□ -2.03
Ddb1Q3U1J4 Gm37778-201ENSMUST00000191732 190 ntBASIC2.35□□□□□ -2.03
Ddb1Q3U1J4 CT030645.1-201ENSMUST00000224020 231 ntBASIC2.35□□□□□ -2.03
Ddb1Q3U1J4 Gm23239-201ENSMUST00000083006 181 ntBASIC2.35□□□□□ -2.03
Ddb1Q3U1J4 Gm14882-201ENSMUST00000117216 218 ntBASIC2.34□□□□□ -2.03
Ddb1Q3U1J4 Gm22279-201ENSMUST00000157200 93 ntBASIC2.34□□□□□ -2.03
Ddb1Q3U1J4 Gm22768-201ENSMUST00000158366 153 ntBASIC2.34□□□□□ -2.03
Ddb1Q3U1J4 Gm3211-201ENSMUST00000172721 304 ntTSL 3 BASIC2.34□□□□□ -2.03
Ddb1Q3U1J4 Gm21064-202ENSMUST00000190583 278 ntBASIC2.34□□□□□ -2.03
Ddb1Q3U1J4 Gm44326-201ENSMUST00000198226 101 ntBASIC2.34□□□□□ -2.03
Ddb1Q3U1J4 AL627387.1-201ENSMUST00000226063 250 ntBASIC2.34□□□□□ -2.03
Ddb1Q3U1J4 Gm22686-201ENSMUST00000082847 100 ntBASIC2.34□□□□□ -2.03
Ddb1Q3U1J4 Mir488-201ENSMUST00000093595 109 ntBASIC2.34□□□□□ -2.03
Ddb1Q3U1J4 Olfr1442-203ENSMUST00000208494 3593 ntAPPRIS P1 TSL 3 BASIC2.34□□□□□ -2.03
Ddb1Q3U1J4 Gm33962-201ENSMUST00000182643 2592 ntBASIC2.33□□□□□ -2.04
Ddb1Q3U1J4 Gm22373-201ENSMUST00000104584 89 ntBASIC2.33□□□□□ -2.04
Ddb1Q3U1J4 Gm25831-201ENSMUST00000158924 163 ntBASIC2.33□□□□□ -2.04
Ddb1Q3U1J4 Mir8119-201ENSMUST00000183371 129 ntBASIC2.33□□□□□ -2.04
Ddb1Q3U1J4 Mir6388-201ENSMUST00000184417 75 ntBASIC2.33□□□□□ -2.04
Ddb1Q3U1J4 Gm44338-201ENSMUST00000198614 110 ntBASIC2.33□□□□□ -2.04
Ddb1Q3U1J4 Gm43911-201ENSMUST00000203097 76 ntBASIC2.33□□□□□ -2.04
Ddb1Q3U1J4 AC134601.3-201ENSMUST00000221682 154 ntBASIC2.33□□□□□ -2.04
Ddb1Q3U1J4 Olfr561-202ENSMUST00000213432 2498 ntAPPRIS P1 TSL 5 BASIC2.33□□□□□ -2.04
Ddb1Q3U1J4 Gm24586-201ENSMUST00000116695 89 ntBASIC2.32□□□□□ -2.04
Ddb1Q3U1J4 Gm23718-201ENSMUST00000157350 307 ntBASIC2.32□□□□□ -2.04
Ddb1Q3U1J4 Gm24851-201ENSMUST00000158028 103 ntBASIC2.32□□□□□ -2.04
Ddb1Q3U1J4 Mir1966-201ENSMUST00000158807 108 ntBASIC2.32□□□□□ -2.04
Ddb1Q3U1J4 Gm25357-201ENSMUST00000082745 72 ntBASIC2.32□□□□□ -2.04
Ddb1Q3U1J4 Gm14405-201ENSMUST00000117808 2330 ntBASIC2.32□□□□□ -2.04
Ddb1Q3U1J4 Trav5n-3-201ENSMUST00000164511 270 ntBASIC2.31□□□□□ -2.04
Ddb1Q3U1J4 Gm29603-201ENSMUST00000186792 334 ntBASIC2.31□□□□□ -2.04
Ddb1Q3U1J4 N4bp2os-201ENSMUST00000201547 235 ntTSL 1 (best) BASIC2.31□□□□□ -2.04
Ddb1Q3U1J4 Gm23947-201ENSMUST00000093636 107 ntBASIC2.31□□□□□ -2.04
Ddb1Q3U1J4 Mir466b-3-201ENSMUST00000103806 81 ntBASIC2.3□□□□□ -2.04
Retrieved 100 of 76,532 protein–RNA pairs in 284.4 ms