Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Zfp788-207ENSMUST00000170770 2499 ntTSL 1 (best) BASIC1.9□□□□□ -2.11
ShhQ62226 Gm26339-201ENSMUST00000102368 99 ntBASIC1.9□□□□□ -2.11
ShhQ62226 Snord89-201ENSMUST00000104516 110 ntBASIC1.9□□□□□ -2.11
ShhQ62226 Mir293-201ENSMUST00000104841 80 ntBASIC1.9□□□□□ -2.11
ShhQ62226 n-R5s187-201ENSMUST00000122769 111 ntBASIC1.9□□□□□ -2.11
ShhQ62226 Gm23390-201ENSMUST00000157393 106 ntBASIC1.9□□□□□ -2.11
ShhQ62226 Gm28912-201ENSMUST00000189001 234 ntBASIC1.9□□□□□ -2.11
ShhQ62226 Gm44052-201ENSMUST00000203382 396 ntBASIC1.9□□□□□ -2.11
ShhQ62226 Ppp4r3c-ps-201ENSMUST00000151416 2445 ntBASIC1.89□□□□□ -2.11
ShhQ62226 Gm24276-201ENSMUST00000102181 110 ntBASIC1.89□□□□□ -2.11
ShhQ62226 Gm22494-201ENSMUST00000104495 128 ntBASIC1.89□□□□□ -2.11
ShhQ62226 Gm25985-201ENSMUST00000122677 107 ntBASIC1.89□□□□□ -2.11
ShhQ62226 Gm23469-201ENSMUST00000157131 104 ntBASIC1.89□□□□□ -2.11
ShhQ62226 Gm28076-201ENSMUST00000188337 410 ntTSL 3 BASIC1.89□□□□□ -2.11
ShhQ62226 AL928567.1-201ENSMUST00000197891 138 ntBASIC1.89□□□□□ -2.11
ShhQ62226 Snord80-202ENSMUST00000199023 77 ntBASIC1.89□□□□□ -2.11
ShhQ62226 Tlr8-201ENSMUST00000049023 3158 ntAPPRIS P1 TSL 1 (best) BASIC1.89□□□□□ -2.11
ShhQ62226 Vmn1r185-210ENSMUST00000228367 6982 ntAPPRIS P1 BASIC1.88□□□□□ -2.11
ShhQ62226 Gm14914-201ENSMUST00000117576 2031 ntBASIC1.88□□□□□ -2.11
ShhQ62226 Gm3211-201ENSMUST00000172721 304 ntTSL 3 BASIC1.88□□□□□ -2.11
ShhQ62226 Mir8119-201ENSMUST00000183371 129 ntBASIC1.88□□□□□ -2.11
ShhQ62226 Gm29308-201ENSMUST00000188863 315 ntBASIC1.88□□□□□ -2.11
ShhQ62226 Gm44490-201ENSMUST00000198566 127 ntBASIC1.88□□□□□ -2.11
ShhQ62226 N4bp2os-201ENSMUST00000201547 235 ntTSL 1 (best) BASIC1.88□□□□□ -2.11
ShhQ62226 Gm19790-201ENSMUST00000214414 251 ntBASIC1.88□□□□□ -2.11
ShhQ62226 Gm20734-201ENSMUST00000216939 193 ntBASIC1.88□□□□□ -2.11
ShhQ62226 AC129202.1-201ENSMUST00000224895 526 ntBASIC1.88□□□□□ -2.11
ShhQ62226 AC158598.1-201ENSMUST00000214349 3847 ntBASIC1.88□□□□□ -2.11
ShhQ62226 AC160984.1-201ENSMUST00000225855 3154 ntBASIC1.88□□□□□ -2.11
ShhQ62226 Gm14536-201ENSMUST00000118324 138 ntBASIC1.87□□□□□ -2.11
ShhQ62226 Gm15027-201ENSMUST00000120922 138 ntBASIC1.87□□□□□ -2.11
ShhQ62226 Gm23655-201ENSMUST00000122627 105 ntBASIC1.87□□□□□ -2.11
ShhQ62226 Gm23718-201ENSMUST00000157350 307 ntBASIC1.87□□□□□ -2.11
ShhQ62226 Gm24237-201ENSMUST00000157790 132 ntBASIC1.87□□□□□ -2.11
ShhQ62226 Gm24851-201ENSMUST00000158028 103 ntBASIC1.87□□□□□ -2.11
ShhQ62226 Gm24668-201ENSMUST00000158935 104 ntBASIC1.87□□□□□ -2.11
ShhQ62226 Gm44326-201ENSMUST00000198226 101 ntBASIC1.87□□□□□ -2.11
ShhQ62226 Ptp4a1-206ENSMUST00000202889 135 ntTSL 2 BASIC1.87□□□□□ -2.11
ShhQ62226 Gm5002-201ENSMUST00000207145 223 ntBASIC1.87□□□□□ -2.11
ShhQ62226 Gm22686-201ENSMUST00000082847 100 ntBASIC1.87□□□□□ -2.11
ShhQ62226 AC122828.3-201ENSMUST00000223019 3915 ntBASIC1.87□□□□□ -2.11
ShhQ62226 Slco6c1-201ENSMUST00000027569 2747 ntAPPRIS P2 TSL 1 (best) BASIC1.87□□□□□ -2.11
ShhQ62226 Olfr791-202ENSMUST00000217228 2502 ntAPPRIS P1 TSL 5 BASIC1.86□□□□□ -2.11
ShhQ62226 Gm15391-201ENSMUST00000147509 257 ntTSL 3 BASIC1.86□□□□□ -2.11
ShhQ62226 Gm25368-201ENSMUST00000158847 131 ntBASIC1.86□□□□□ -2.11
ShhQ62226 Gm23813-201ENSMUST00000175153 77 ntBASIC1.86□□□□□ -2.11
ShhQ62226 Gm21064-202ENSMUST00000190583 278 ntBASIC1.86□□□□□ -2.11
ShhQ62226 Gm43021-201ENSMUST00000198692 337 ntTSL 3 BASIC1.86□□□□□ -2.11
ShhQ62226 Snord43-201ENSMUST00000199549 108 ntBASIC1.86□□□□□ -2.11
ShhQ62226 Gm45027-201ENSMUST00000207081 78 ntTSL 3 BASIC1.86□□□□□ -2.11
ShhQ62226 Mir186-201ENSMUST00000083497 71 ntBASIC1.86□□□□□ -2.11
ShhQ62226 BC022960-201ENSMUST00000119987 1815 ntBASIC1.86□□□□□ -2.11
ShhQ62226 AC133934.2-201ENSMUST00000221729 4129 ntBASIC1.86□□□□□ -2.11
ShhQ62226 Olfr1291-ps1-201ENSMUST00000121345 5403 ntAPPRIS P1 TSL 5 BASIC1.85□□□□□ -2.11
ShhQ62226 Olfr307-202ENSMUST00000213705 4498 ntAPPRIS P1 TSL 5 BASIC1.85□□□□□ -2.11
ShhQ62226 Gm26293-201ENSMUST00000104170 84 ntBASIC1.85□□□□□ -2.11
ShhQ62226 Gm23990-201ENSMUST00000117031 117 ntBASIC1.85□□□□□ -2.11
ShhQ62226 Gm14937-201ENSMUST00000119709 208 ntBASIC1.85□□□□□ -2.11
ShhQ62226 Gm22476-201ENSMUST00000158902 100 ntBASIC1.85□□□□□ -2.11
ShhQ62226 Gm20477-201ENSMUST00000174028 280 ntBASIC1.85□□□□□ -2.11
ShhQ62226 Mir466b-1-201ENSMUST00000177988 82 ntBASIC1.85□□□□□ -2.11
ShhQ62226 Mir6352-201ENSMUST00000184495 116 ntBASIC1.85□□□□□ -2.11
ShhQ62226 Gm19855-201ENSMUST00000210145 249 ntBASIC1.85□□□□□ -2.11
ShhQ62226 Mir107-201ENSMUST00000083660 87 ntBASIC1.85□□□□□ -2.11
ShhQ62226 AL645643.1-201ENSMUST00000222438 3897 ntBASIC1.85□□□□□ -2.11
ShhQ62226 Vmn1r-ps120-201ENSMUST00000120288 377 ntBASIC1.84□□□□□ -2.11
ShhQ62226 Mir3086-201ENSMUST00000175072 87 ntBASIC1.84□□□□□ -2.11
ShhQ62226 Gm27979-201ENSMUST00000185126 56 ntBASIC1.84□□□□□ -2.11
ShhQ62226 Gm29347-201ENSMUST00000186695 449 ntTSL 3 BASIC1.84□□□□□ -2.11
ShhQ62226 Gm23370-201ENSMUST00000199545 130 ntBASIC1.84□□□□□ -2.11
ShhQ62226 Gm24038-201ENSMUST00000082872 159 ntBASIC1.84□□□□□ -2.11
ShhQ62226 Gm24412-201ENSMUST00000083426 109 ntBASIC1.84□□□□□ -2.11
ShhQ62226 Mir151-201ENSMUST00000083678 68 ntBASIC1.84□□□□□ -2.11
ShhQ62226 n-R5s183-201ENSMUST00000083939 115 ntBASIC1.84□□□□□ -2.11
ShhQ62226 Gm21940-201ENSMUST00000204940 2278 ntBASIC1.84□□□□□ -2.12
ShhQ62226 Zfp960-201ENSMUST00000127027 2667 ntAPPRIS P1 TSL 1 (best) BASIC1.84□□□□□ -2.12
ShhQ62226 Olfr1253-203ENSMUST00000215185 4984 ntAPPRIS P1 TSL 5 BASIC1.83□□□□□ -2.12
ShhQ62226 Gm25832-201ENSMUST00000104140 130 ntBASIC1.83□□□□□ -2.12
ShhQ62226 Gm22336-201ENSMUST00000157719 107 ntBASIC1.83□□□□□ -2.12
ShhQ62226 Gm25460-201ENSMUST00000157954 127 ntBASIC1.83□□□□□ -2.12
ShhQ62226 Gm23967-201ENSMUST00000175062 78 ntBASIC1.83□□□□□ -2.12
ShhQ62226 Gm25464-201ENSMUST00000175481 107 ntBASIC1.83□□□□□ -2.12
ShhQ62226 Gm16404-201ENSMUST00000177739 468 ntBASIC1.83□□□□□ -2.12
ShhQ62226 Zfp616-205ENSMUST00000178159 2964 ntAPPRIS P1 BASIC1.83□□□□□ -2.12
ShhQ62226 Gm14598-201ENSMUST00000180109 468 ntBASIC1.83□□□□□ -2.12
ShhQ62226 Gm14625-201ENSMUST00000180231 468 ntBASIC1.83□□□□□ -2.12
ShhQ62226 Trav7-6-202ENSMUST00000184687 275 ntAPPRIS P1 BASIC1.83□□□□□ -2.12
ShhQ62226 Gm44057-201ENSMUST00000204547 96 ntBASIC1.83□□□□□ -2.12
ShhQ62226 AC149294.9-201ENSMUST00000227256 164 ntBASIC1.83□□□□□ -2.12
ShhQ62226 Gm22704-201ENSMUST00000083027 137 ntBASIC1.83□□□□□ -2.12
ShhQ62226 Knl1-203ENSMUST00000099542 6525 ntAPPRIS P1 TSL 5 BASIC1.83□□□□□ -2.12
ShhQ62226 Gm44578-201ENSMUST00000207236 3835 ntBASIC1.82□□□□□ -2.12
ShhQ62226 Gm43877-201ENSMUST00000205029 2238 ntBASIC1.82□□□□□ -2.12
ShhQ62226 AC159625.1-201ENSMUST00000220994 2625 ntBASIC1.82□□□□□ -2.12
ShhQ62226 Gm24375-201ENSMUST00000104397 132 ntBASIC1.82□□□□□ -2.12
ShhQ62226 Rhox11-ps3-201ENSMUST00000121166 233 ntBASIC1.82□□□□□ -2.12
ShhQ62226 Zfp969-202ENSMUST00000131041 252 ntTSL 2 BASIC1.82□□□□□ -2.12
ShhQ62226 Mir1949-201ENSMUST00000157434 141 ntBASIC1.82□□□□□ -2.12
ShhQ62226 Gm25884-201ENSMUST00000157782 62 ntBASIC1.82□□□□□ -2.12
ShhQ62226 Gm25599-201ENSMUST00000157816 103 ntBASIC1.82□□□□□ -2.12
Retrieved 100 of 76,532 protein–RNA pairs in 79.1 ms