Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 Gm42675-201ENSMUST00000197552 4035 ntBASIC3.42□□□□□ -1.86
Rnf40Q3U319 Olfr1225-202ENSMUST00000216961 3231 ntAPPRIS P1 TSL 5 BASIC3.41□□□□□ -1.86
Rnf40Q3U319 Gm23271-201ENSMUST00000104052 124 ntBASIC3.41□□□□□ -1.86
Rnf40Q3U319 n-R5s189-201ENSMUST00000122675 114 ntBASIC3.41□□□□□ -1.86
Rnf40Q3U319 Gm16584-201ENSMUST00000159267 189 ntBASIC3.41□□□□□ -1.86
Rnf40Q3U319 Mir6237-201ENSMUST00000183808 91 ntBASIC3.41□□□□□ -1.86
Rnf40Q3U319 Gm27773-201ENSMUST00000184087 78 ntBASIC3.41□□□□□ -1.86
Rnf40Q3U319 Olfr1202-202ENSMUST00000214703 3665 ntAPPRIS P1 TSL 5 BASIC3.41□□□□□ -1.86
Rnf40Q3U319 Prlr-205ENSMUST00000128921 3836 ntAPPRIS ALT2 TSL 1 (best) BASIC3.41□□□□□ -1.86
Rnf40Q3U319 Gm38083-201ENSMUST00000194758 3498 ntBASIC3.4□□□□□ -1.86
Rnf40Q3U319 Olfr912-201ENSMUST00000217160 5726 ntAPPRIS P1 TSL 2 BASIC3.4□□□□□ -1.86
Rnf40Q3U319 Mir293-201ENSMUST00000104841 80 ntBASIC3.4□□□□□ -1.87
Rnf40Q3U319 Gm23860-201ENSMUST00000179446 132 ntBASIC3.4□□□□□ -1.87
Rnf40Q3U319 Mir7676-1-201ENSMUST00000183491 62 ntBASIC3.4□□□□□ -1.87
Rnf40Q3U319 Mir7676-2-201ENSMUST00000183523 62 ntBASIC3.4□□□□□ -1.87
Rnf40Q3U319 Mir6376-201ENSMUST00000185149 131 ntBASIC3.4□□□□□ -1.87
Rnf40Q3U319 Gm23136-201ENSMUST00000083425 99 ntBASIC3.4□□□□□ -1.87
Rnf40Q3U319 Olfr1484-205ENSMUST00000216369 3764 ntTSL 5 BASIC3.4□□□□□ -1.87
Rnf40Q3U319 Gm38162-201ENSMUST00000195562 4597 ntBASIC3.4□□□□□ -1.87
Rnf40Q3U319 Olfr1162-202ENSMUST00000183862 4800 ntAPPRIS P1 TSL 2 BASIC3.39□□□□□ -1.87
Rnf40Q3U319 Gm11253-201ENSMUST00000118486 201 ntBASIC3.39□□□□□ -1.87
Rnf40Q3U319 Gm25329-201ENSMUST00000158041 126 ntBASIC3.39□□□□□ -1.87
Rnf40Q3U319 Gm24553-201ENSMUST00000158653 131 ntBASIC3.39□□□□□ -1.87
Rnf40Q3U319 Gm23775-201ENSMUST00000158991 249 ntBASIC3.39□□□□□ -1.87
Rnf40Q3U319 Gm25229-201ENSMUST00000178587 79 ntBASIC3.39□□□□□ -1.87
Rnf40Q3U319 Mir6408-201ENSMUST00000183643 91 ntBASIC3.39□□□□□ -1.87
Rnf40Q3U319 Gm29408-201ENSMUST00000187536 216 ntBASIC3.39□□□□□ -1.87
Rnf40Q3U319 Trbv25-201ENSMUST00000194700 273 ntBASIC3.39□□□□□ -1.87
Rnf40Q3U319 Olfr420-202ENSMUST00000213748 3806 ntAPPRIS P1 TSL 5 BASIC3.39□□□□□ -1.87
Rnf40Q3U319 AC113291.1-201ENSMUST00000217557 403 ntTSL 3 BASIC3.39□□□□□ -1.87
Rnf40Q3U319 AC168056.1-201ENSMUST00000225270 180 ntBASIC3.39□□□□□ -1.87
Rnf40Q3U319 n-R5s166-201ENSMUST00000082898 121 ntBASIC3.39□□□□□ -1.87
Rnf40Q3U319 C630028M04Rik-201ENSMUST00000141452 3387 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
Rnf40Q3U319 Snhg14-213ENSMUST00000190666 3708 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
Rnf40Q3U319 Tlr3-202ENSMUST00000167106 4093 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
Rnf40Q3U319 Ifi203-202ENSMUST00000081216 3610 ntAPPRIS P3 TSL 1 (best) BASIC3.38□□□□□ -1.87
Rnf40Q3U319 Mir802-201ENSMUST00000103258 97 ntBASIC3.38□□□□□ -1.87
Rnf40Q3U319 Gm25727-201ENSMUST00000104522 131 ntBASIC3.38□□□□□ -1.87
Rnf40Q3U319 Gm23816-201ENSMUST00000179617 132 ntBASIC3.38□□□□□ -1.87
Rnf40Q3U319 Gm25740-201ENSMUST00000180247 107 ntBASIC3.38□□□□□ -1.87
Rnf40Q3U319 Gm23190-201ENSMUST00000180307 64 ntBASIC3.38□□□□□ -1.87
Rnf40Q3U319 Gm42795-201ENSMUST00000198847 76 ntBASIC3.38□□□□□ -1.87
Rnf40Q3U319 Gm23738-201ENSMUST00000082828 171 ntBASIC3.38□□□□□ -1.87
Rnf40Q3U319 Gm25697-201ENSMUST00000082902 98 ntBASIC3.38□□□□□ -1.87
Rnf40Q3U319 Mir30c-2-201ENSMUST00000083633 84 ntBASIC3.38□□□□□ -1.87
Rnf40Q3U319 Vmn1r185-206ENSMUST00000227479 6525 ntAPPRIS P1 BASIC3.38□□□□□ -1.87
Rnf40Q3U319 Cp-201ENSMUST00000003714 4092 ntAPPRIS ALT2 TSL 1 (best) BASIC3.38□□□□□ -1.87
Rnf40Q3U319 Gm25833-201ENSMUST00000104137 133 ntBASIC3.37□□□□□ -1.87
Rnf40Q3U319 Gm12335-201ENSMUST00000119738 327 ntBASIC3.37□□□□□ -1.87
Rnf40Q3U319 Defa-ps5-201ENSMUST00000121541 279 ntBASIC3.37□□□□□ -1.87
Rnf40Q3U319 Gm3848-201ENSMUST00000136693 299 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
Rnf40Q3U319 Gm24000-201ENSMUST00000158063 89 ntBASIC3.37□□□□□ -1.87
Rnf40Q3U319 Gm28647-201ENSMUST00000188416 197 ntBASIC3.37□□□□□ -1.87
Rnf40Q3U319 Gm37027-201ENSMUST00000194642 256 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
Rnf40Q3U319 Gm4036-201ENSMUST00000220842 626 ntBASIC3.37□□□□□ -1.87
Rnf40Q3U319 Gm25357-201ENSMUST00000082745 72 ntBASIC3.37□□□□□ -1.87
Rnf40Q3U319 Gm24038-201ENSMUST00000082872 159 ntBASIC3.37□□□□□ -1.87
Rnf40Q3U319 C230088H06Rik-202ENSMUST00000181752 3010 ntTSL 5 BASIC3.37□□□□□ -1.87
Rnf40Q3U319 Gm38211-201ENSMUST00000192814 7217 ntBASIC3.36□□□□□ -1.87
Rnf40Q3U319 Gm24581-201ENSMUST00000103962 133 ntBASIC3.36□□□□□ -1.87
Rnf40Q3U319 Gm11333-201ENSMUST00000119479 148 ntBASIC3.36□□□□□ -1.87
Rnf40Q3U319 Gm24064-201ENSMUST00000157486 106 ntBASIC3.36□□□□□ -1.87
Rnf40Q3U319 Gm22731-201ENSMUST00000158086 94 ntBASIC3.36□□□□□ -1.87
Rnf40Q3U319 Mir6353-201ENSMUST00000183596 113 ntBASIC3.36□□□□□ -1.87
Rnf40Q3U319 Gm27975-201ENSMUST00000184400 101 ntBASIC3.36□□□□□ -1.87
Rnf40Q3U319 Gm37515-201ENSMUST00000193321 3817 ntBASIC3.36□□□□□ -1.87
Rnf40Q3U319 Gm25855-201ENSMUST00000082787 72 ntBASIC3.36□□□□□ -1.87
Rnf40Q3U319 Gm37331-201ENSMUST00000192367 3375 ntBASIC3.35□□□□□ -1.87
Rnf40Q3U319 Zfp534-201ENSMUST00000117638 2885 ntAPPRIS P1 TSL 2 BASIC3.35□□□□□ -1.87
Rnf40Q3U319 Ranbp2-201ENSMUST00000003310 9608 ntAPPRIS P1 TSL 5 BASIC3.35□□□□□ -1.87
Rnf40Q3U319 Gm14843-201ENSMUST00000119596 212 ntBASIC3.35□□□□□ -1.87
Rnf40Q3U319 Gm16021-201ENSMUST00000121176 219 ntBASIC3.35□□□□□ -1.87
Rnf40Q3U319 Gm22961-201ENSMUST00000157964 106 ntBASIC3.35□□□□□ -1.87
Rnf40Q3U319 Gm23181-201ENSMUST00000158685 110 ntBASIC3.35□□□□□ -1.87
Rnf40Q3U319 Gm8031-201ENSMUST00000213430 626 ntBASIC3.35□□□□□ -1.87
Rnf40Q3U319 AC122335.1-201ENSMUST00000217587 175 ntBASIC3.35□□□□□ -1.87
Rnf40Q3U319 AC130477.2-201ENSMUST00000228158 274 ntBASIC3.35□□□□□ -1.87
Rnf40Q3U319 Gm22458-201ENSMUST00000082576 107 ntBASIC3.35□□□□□ -1.87
Rnf40Q3U319 Gm22048-201ENSMUST00000104721 89 ntBASIC3.34□□□□□ -1.87
Rnf40Q3U319 Gm11414-201ENSMUST00000121795 263 ntBASIC3.34□□□□□ -1.87
Rnf40Q3U319 Gm23983-201ENSMUST00000157142 114 ntBASIC3.34□□□□□ -1.87
Rnf40Q3U319 Gm22082-201ENSMUST00000157587 161 ntBASIC3.34□□□□□ -1.87
Rnf40Q3U319 Gm23666-201ENSMUST00000158053 116 ntBASIC3.34□□□□□ -1.87
Rnf40Q3U319 Gm37343-201ENSMUST00000192542 111 ntBASIC3.34□□□□□ -1.87
Rnf40Q3U319 AC069074.1-201ENSMUST00000220048 381 ntBASIC3.34□□□□□ -1.87
Rnf40Q3U319 Mir490-201ENSMUST00000093567 84 ntBASIC3.34□□□□□ -1.87
Rnf40Q3U319 Vmn1r71-207ENSMUST00000228248 5469 ntAPPRIS P2 BASIC3.34□□□□□ -1.87
Rnf40Q3U319 Olfr1256-204ENSMUST00000215613 4543 ntAPPRIS P1 TSL 3 BASIC3.34□□□□□ -1.87
Rnf40Q3U319 Olfr1450-203ENSMUST00000213925 3075 ntAPPRIS P1 TSL 5 BASIC3.34□□□□□ -1.88
Rnf40Q3U319 Olfr777-202ENSMUST00000204573 5407 ntAPPRIS P1 TSL 5 BASIC3.34□□□□□ -1.88
Rnf40Q3U319 Olfr800-202ENSMUST00000217094 3831 ntAPPRIS P1 TSL 3 BASIC3.34□□□□□ -1.88
Rnf40Q3U319 Olfr107-203ENSMUST00000215947 3954 ntAPPRIS P1 TSL 5 BASIC3.33□□□□□ -1.88
Rnf40Q3U319 Gpr174-203ENSMUST00000118820 5112 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
Rnf40Q3U319 Gm26080-201ENSMUST00000104069 131 ntBASIC3.33□□□□□ -1.88
Rnf40Q3U319 Gm26418-201ENSMUST00000104275 137 ntBASIC3.33□□□□□ -1.88
Rnf40Q3U319 Defa-ps9-201ENSMUST00000118264 276 ntBASIC3.33□□□□□ -1.88
Rnf40Q3U319 Gm24183-201ENSMUST00000122572 93 ntBASIC3.33□□□□□ -1.88
Rnf40Q3U319 Gm27639-201ENSMUST00000184937 85 ntBASIC3.33□□□□□ -1.88
Rnf40Q3U319 AC160865.1-201ENSMUST00000219873 151 ntBASIC3.33□□□□□ -1.88
Rnf40Q3U319 Olfr652-202ENSMUST00000215410 4672 ntAPPRIS P1 TSL 5 BASIC3.32□□□□□ -1.88
Retrieved 100 of 76,532 protein–RNA pairs in 93.8 ms