Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Mir7678-201ENSMUST00000185076 71 ntBASIC2.52□□□□□ -2.01
Ddb1Q3U1J4 AC154994.1-201ENSMUST00000217395 302 ntBASIC2.52□□□□□ -2.01
Ddb1Q3U1J4 AC124182.1-201ENSMUST00000227091 321 ntBASIC2.52□□□□□ -2.01
Ddb1Q3U1J4 Gm24536-201ENSMUST00000083144 107 ntBASIC2.52□□□□□ -2.01
Ddb1Q3U1J4 Ifi203-209ENSMUST00000156895 3605 ntAPPRIS ALT2 TSL 1 (best) BASIC2.51□□□□□ -2.01
Ddb1Q3U1J4 Olfr948-202ENSMUST00000216132 4164 ntAPPRIS P1 TSL 5 BASIC2.51□□□□□ -2.01
Ddb1Q3U1J4 Gm26293-201ENSMUST00000104170 84 ntBASIC2.51□□□□□ -2.01
Ddb1Q3U1J4 Gm24478-201ENSMUST00000157439 158 ntBASIC2.51□□□□□ -2.01
Ddb1Q3U1J4 Mir9-3-201ENSMUST00000175497 90 ntBASIC2.51□□□□□ -2.01
Ddb1Q3U1J4 Gm28434-201ENSMUST00000187738 500 ntAPPRIS P1 TSL 5 BASIC2.51□□□□□ -2.01
Ddb1Q3U1J4 Mir3961-201ENSMUST00000198795 59 ntBASIC2.51□□□□□ -2.01
Ddb1Q3U1J4 Gm44578-201ENSMUST00000207236 3835 ntBASIC2.51□□□□□ -2.01
Ddb1Q3U1J4 Gm13560-201ENSMUST00000121865 329 ntBASIC2.5□□□□□ -2.01
Ddb1Q3U1J4 Gm26157-201ENSMUST00000158974 126 ntBASIC2.5□□□□□ -2.01
Ddb1Q3U1J4 Gm42960-201ENSMUST00000202160 241 ntBASIC2.5□□□□□ -2.01
Ddb1Q3U1J4 Snord118-201ENSMUST00000082965 135 ntBASIC2.5□□□□□ -2.01
Ddb1Q3U1J4 Gm25895-201ENSMUST00000083714 100 ntBASIC2.5□□□□□ -2.01
Ddb1Q3U1J4 Gm25513-201ENSMUST00000083861 162 ntBASIC2.5□□□□□ -2.01
Ddb1Q3U1J4 Gm18795-201ENSMUST00000222371 3266 ntTSL 5 BASIC2.5□□□□□ -2.01
Ddb1Q3U1J4 Skint5-202ENSMUST00000169631 4497 ntAPPRIS P5 TSL 1 (best) BASIC2.5□□□□□ -2.01
Ddb1Q3U1J4 Gm36669-201ENSMUST00000201757 3650 ntTSL 1 (best) BASIC2.5□□□□□ -2.01
Ddb1Q3U1J4 Zfp960-201ENSMUST00000127027 2667 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
Ddb1Q3U1J4 Gm26080-201ENSMUST00000104069 131 ntBASIC2.49□□□□□ -2.01
Ddb1Q3U1J4 Gm25920-201ENSMUST00000158307 99 ntBASIC2.49□□□□□ -2.01
Ddb1Q3U1J4 AC144671.1-201ENSMUST00000215265 99 ntBASIC2.49□□□□□ -2.01
Ddb1Q3U1J4 Gm3848-201ENSMUST00000136693 299 ntTSL 1 (best) BASIC2.48□□□□□ -2.01
Ddb1Q3U1J4 Gm16510-201ENSMUST00000153501 249 ntBASIC2.48□□□□□ -2.01
Ddb1Q3U1J4 Gm26097-201ENSMUST00000179642 93 ntBASIC2.48□□□□□ -2.01
Ddb1Q3U1J4 Gm9156-201ENSMUST00000189660 463 ntBASIC2.48□□□□□ -2.01
Ddb1Q3U1J4 Gm37027-201ENSMUST00000194642 256 ntTSL 1 (best) BASIC2.48□□□□□ -2.01
Ddb1Q3U1J4 Gm43199-201ENSMUST00000200019 307 ntBASIC2.48□□□□□ -2.01
Ddb1Q3U1J4 Mir155-201ENSMUST00000083463 65 ntBASIC2.48□□□□□ -2.01
Ddb1Q3U1J4 Olfr794-202ENSMUST00000204820 3044 ntAPPRIS P1 TSL 2 BASIC2.48□□□□□ -2.01
Ddb1Q3U1J4 Gm15314-201ENSMUST00000120740 1887 ntBASIC2.48□□□□□ -2.01
Ddb1Q3U1J4 Gm26049-201ENSMUST00000157313 108 ntBASIC2.47□□□□□ -2.01
Ddb1Q3U1J4 Igkv13-78-1-201ENSMUST00000199298 200 ntBASIC2.47□□□□□ -2.01
Ddb1Q3U1J4 Olfr229-202ENSMUST00000214904 3125 ntAPPRIS P1 TSL 5 BASIC2.47□□□□□ -2.01
Ddb1Q3U1J4 Olfr711-203ENSMUST00000216335 4724 ntAPPRIS P1 TSL 5 BASIC2.47□□□□□ -2.01
Ddb1Q3U1J4 Gm3081-201ENSMUST00000193413 3025 ntBASIC2.47□□□□□ -2.01
Ddb1Q3U1J4 Gm26624-201ENSMUST00000181486 3769 ntTSL 5 BASIC2.46□□□□□ -2.02
Ddb1Q3U1J4 Gm21940-201ENSMUST00000204940 2278 ntBASIC2.46□□□□□ -2.02
Ddb1Q3U1J4 Gm22761-201ENSMUST00000102278 96 ntBASIC2.46□□□□□ -2.02
Ddb1Q3U1J4 Gm23277-201ENSMUST00000157914 136 ntBASIC2.46□□□□□ -2.02
Ddb1Q3U1J4 Gm23665-201ENSMUST00000158054 62 ntBASIC2.46□□□□□ -2.02
Ddb1Q3U1J4 Gm25371-201ENSMUST00000158162 101 ntBASIC2.46□□□□□ -2.02
Ddb1Q3U1J4 Gm26403-201ENSMUST00000158500 105 ntBASIC2.46□□□□□ -2.02
Ddb1Q3U1J4 AC163289.1-201ENSMUST00000215919 262 ntBASIC2.46□□□□□ -2.02
Ddb1Q3U1J4 Gm25796-201ENSMUST00000082645 163 ntBASIC2.46□□□□□ -2.02
Ddb1Q3U1J4 Olfr618-202ENSMUST00000214883 3304 ntAPPRIS P1 TSL 5 BASIC2.46□□□□□ -2.02
Ddb1Q3U1J4 Olfr1153-202ENSMUST00000217436 2144 ntAPPRIS P1 TSL 5 BASIC2.45□□□□□ -2.02
Ddb1Q3U1J4 Vmn1r185-210ENSMUST00000228367 6982 ntAPPRIS P1 BASIC2.45□□□□□ -2.02
Ddb1Q3U1J4 Gm22586-201ENSMUST00000157507 122 ntBASIC2.45□□□□□ -2.02
Ddb1Q3U1J4 Gm29308-201ENSMUST00000188863 315 ntBASIC2.45□□□□□ -2.02
Ddb1Q3U1J4 Gm28537-201ENSMUST00000189026 315 ntBASIC2.45□□□□□ -2.02
Ddb1Q3U1J4 Gm29631-201ENSMUST00000191065 315 ntBASIC2.45□□□□□ -2.02
Ddb1Q3U1J4 AC168880.2-201ENSMUST00000224488 201 ntBASIC2.45□□□□□ -2.02
Ddb1Q3U1J4 AC159625.1-201ENSMUST00000220994 2625 ntBASIC2.45□□□□□ -2.02
Ddb1Q3U1J4 Zfp788-207ENSMUST00000170770 2499 ntTSL 1 (best) BASIC2.44□□□□□ -2.02
Ddb1Q3U1J4 Snord89-201ENSMUST00000104516 110 ntBASIC2.44□□□□□ -2.02
Ddb1Q3U1J4 n-R5s15-201ENSMUST00000122635 111 ntBASIC2.44□□□□□ -2.02
Ddb1Q3U1J4 Gm24054-201ENSMUST00000158619 105 ntBASIC2.44□□□□□ -2.02
Ddb1Q3U1J4 Gm22139-201ENSMUST00000158747 105 ntBASIC2.44□□□□□ -2.02
Ddb1Q3U1J4 1700014F14Rik-201ENSMUST00000199566 197 ntTSL 1 (best) BASIC2.44□□□□□ -2.02
Ddb1Q3U1J4 Olfr1218-202ENSMUST00000213609 3760 ntAPPRIS P1 TSL 5 BASIC2.44□□□□□ -2.02
Ddb1Q3U1J4 Olfr659-202ENSMUST00000214986 4842 ntAPPRIS P1 TSL 5 BASIC2.44□□□□□ -2.02
Ddb1Q3U1J4 Olfr868-202ENSMUST00000212999 4233 ntAPPRIS P1 TSL 3 BASIC2.44□□□□□ -2.02
Ddb1Q3U1J4 Traj39-201ENSMUST00000103703 63 ntAPPRIS P1 BASIC2.43□□□□□ -2.02
Ddb1Q3U1J4 Gm6025-201ENSMUST00000121517 201 ntBASIC2.43□□□□□ -2.02
Ddb1Q3U1J4 Gm25267-201ENSMUST00000158522 63 ntBASIC2.43□□□□□ -2.02
Ddb1Q3U1J4 Gm24167-201ENSMUST00000177733 124 ntBASIC2.43□□□□□ -2.02
Ddb1Q3U1J4 Gm24028-201ENSMUST00000178991 124 ntBASIC2.43□□□□□ -2.02
Ddb1Q3U1J4 Gm28794-201ENSMUST00000185276 136 ntBASIC2.43□□□□□ -2.02
Ddb1Q3U1J4 Mir7232-201ENSMUST00000197929 74 ntBASIC2.43□□□□□ -2.02
Ddb1Q3U1J4 CT485607.2-201ENSMUST00000214650 91 ntBASIC2.43□□□□□ -2.02
Ddb1Q3U1J4 Gm25814-201ENSMUST00000082754 107 ntBASIC2.43□□□□□ -2.02
Ddb1Q3U1J4 Mir93-201ENSMUST00000083593 88 ntBASIC2.43□□□□□ -2.02
Ddb1Q3U1J4 Gm21876-201ENSMUST00000096511 282 ntAPPRIS P1 TSL 5 BASIC2.43□□□□□ -2.02
Ddb1Q3U1J4 Gm22148-201ENSMUST00000104445 107 ntBASIC2.42□□□□□ -2.02
Ddb1Q3U1J4 Gm23655-201ENSMUST00000122627 105 ntBASIC2.42□□□□□ -2.02
Ddb1Q3U1J4 Gm22476-201ENSMUST00000158902 100 ntBASIC2.42□□□□□ -2.02
Ddb1Q3U1J4 Gm24333-201ENSMUST00000175101 84 ntBASIC2.42□□□□□ -2.02
Ddb1Q3U1J4 Gm25464-201ENSMUST00000175481 107 ntBASIC2.42□□□□□ -2.02
Ddb1Q3U1J4 Gm42988-201ENSMUST00000198116 225 ntBASIC2.42□□□□□ -2.02
Ddb1Q3U1J4 Gm44470-201ENSMUST00000203913 142 ntBASIC2.42□□□□□ -2.02
Ddb1Q3U1J4 Gm38407-201ENSMUST00000218017 474 ntTSL 2 BASIC2.42□□□□□ -2.02
Ddb1Q3U1J4 AC168056.1-201ENSMUST00000225270 180 ntBASIC2.42□□□□□ -2.02
Ddb1Q3U1J4 Gm25136-201ENSMUST00000083253 115 ntBASIC2.42□□□□□ -2.02
Ddb1Q3U1J4 Agmo-201ENSMUST00000049874 2423 ntAPPRIS P1 TSL 1 (best) BASIC2.42□□□□□ -2.02
Ddb1Q3U1J4 AL645643.1-201ENSMUST00000222438 3897 ntBASIC2.42□□□□□ -2.02
Ddb1Q3U1J4 Gm43877-201ENSMUST00000205029 2238 ntBASIC2.41□□□□□ -2.02
Ddb1Q3U1J4 BC022960-201ENSMUST00000119987 1815 ntBASIC2.41□□□□□ -2.02
Ddb1Q3U1J4 Mir293-201ENSMUST00000104841 80 ntBASIC2.41□□□□□ -2.02
Ddb1Q3U1J4 Gm3724-201ENSMUST00000197957 349 ntBASIC2.41□□□□□ -2.02
Ddb1Q3U1J4 Gm43021-201ENSMUST00000198692 337 ntTSL 3 BASIC2.41□□□□□ -2.02
Ddb1Q3U1J4 AC129085.5-201ENSMUST00000225468 400 ntBASIC2.41□□□□□ -2.02
Ddb1Q3U1J4 Gm25402-201ENSMUST00000082966 131 ntBASIC2.41□□□□□ -2.02
Ddb1Q3U1J4 Gpr174-202ENSMUST00000117310 3536 ntAPPRIS P1 TSL 1 (best) BASIC2.41□□□□□ -2.02
Ddb1Q3U1J4 Gm24605-201ENSMUST00000104772 96 ntBASIC2.4□□□□□ -2.03
Ddb1Q3U1J4 Gm11334-201ENSMUST00000121969 156 ntBASIC2.4□□□□□ -2.03
Ddb1Q3U1J4 Gm11250-201ENSMUST00000142137 306 ntTSL 5 BASIC2.4□□□□□ -2.03
Retrieved 100 of 76,532 protein–RNA pairs in 283.3 ms