Protein–RNA interactions for Protein: Q9D6Y1

Ccdc3, Coiled-coil domain-containing protein 3, mousemouse

Predictions only

Length 273 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc3Q9D6Y1 Gm13518-201ENSMUST00000120018 233 ntBASIC0.56□□□□□ -2.32
Ccdc3Q9D6Y1 Gm14846-201ENSMUST00000121868 216 ntBASIC0.56□□□□□ -2.32
Ccdc3Q9D6Y1 Gm22482-201ENSMUST00000122563 359 ntBASIC0.56□□□□□ -2.32
Ccdc3Q9D6Y1 Gm24772-201ENSMUST00000158507 110 ntBASIC0.56□□□□□ -2.32
Ccdc3Q9D6Y1 Gm26914-201ENSMUST00000182262 223 ntBASIC0.56□□□□□ -2.32
Ccdc3Q9D6Y1 Gm28921-201ENSMUST00000190219 378 ntBASIC0.56□□□□□ -2.32
Ccdc3Q9D6Y1 Gm44387-201ENSMUST00000196298 145 ntBASIC0.56□□□□□ -2.32
Ccdc3Q9D6Y1 Mir362-201ENSMUST00000093592 65 ntBASIC0.56□□□□□ -2.32
Ccdc3Q9D6Y1 Mir496a-201ENSMUST00000093627 79 ntBASIC0.56□□□□□ -2.32
Ccdc3Q9D6Y1 AC164297.1-201ENSMUST00000224484 1561 ntBASIC0.55□□□□□ -2.32
Ccdc3Q9D6Y1 Mir669p-2-201ENSMUST00000103868 87 ntBASIC0.55□□□□□ -2.32
Ccdc3Q9D6Y1 Mir669p-1-201ENSMUST00000103884 87 ntBASIC0.55□□□□□ -2.32
Ccdc3Q9D6Y1 Gm25781-201ENSMUST00000122527 84 ntBASIC0.55□□□□□ -2.32
Ccdc3Q9D6Y1 Gm22555-201ENSMUST00000157801 62 ntBASIC0.55□□□□□ -2.32
Ccdc3Q9D6Y1 Gm23759-201ENSMUST00000158351 268 ntBASIC0.55□□□□□ -2.32
Ccdc3Q9D6Y1 Gm22163-201ENSMUST00000158408 135 ntBASIC0.55□□□□□ -2.32
Ccdc3Q9D6Y1 Gm16546-201ENSMUST00000159442 355 ntBASIC0.55□□□□□ -2.32
Ccdc3Q9D6Y1 Vmn1r-ps31-201ENSMUST00000174112 238 ntBASIC0.55□□□□□ -2.32
Ccdc3Q9D6Y1 Gm25247-201ENSMUST00000175475 90 ntBASIC0.55□□□□□ -2.32
Ccdc3Q9D6Y1 Gm26727-201ENSMUST00000180773 366 ntAPPRIS P1 BASIC0.55□□□□□ -2.32
Ccdc3Q9D6Y1 AC157476.1-201ENSMUST00000215555 169 ntBASIC0.55□□□□□ -2.32
Ccdc3Q9D6Y1 AC125311.1-201ENSMUST00000226950 220 ntBASIC0.55□□□□□ -2.32
Ccdc3Q9D6Y1 DQ267101-201ENSMUST00000082562 73 ntBASIC0.55□□□□□ -2.32
Ccdc3Q9D6Y1 Mir216a-201ENSMUST00000083605 72 ntBASIC0.55□□□□□ -2.32
Ccdc3Q9D6Y1 Mir490-201ENSMUST00000093567 84 ntBASIC0.55□□□□□ -2.32
Ccdc3Q9D6Y1 Sycp1-ps1-201ENSMUST00000207882 2768 ntBASIC0.54□□□□□ -2.32
Ccdc3Q9D6Y1 Mir465b-1-201ENSMUST00000103940 79 ntBASIC0.54□□□□□ -2.32
Ccdc3Q9D6Y1 Mir465b-2-201ENSMUST00000104662 79 ntBASIC0.54□□□□□ -2.32
Ccdc3Q9D6Y1 Gm23182-201ENSMUST00000158688 135 ntBASIC0.54□□□□□ -2.32
Ccdc3Q9D6Y1 Gm20391-201ENSMUST00000174722 106 ntBASIC0.54□□□□□ -2.32
Ccdc3Q9D6Y1 AC102369.1-201ENSMUST00000218415 373 ntBASIC0.54□□□□□ -2.32
Ccdc3Q9D6Y1 Gm25697-201ENSMUST00000082902 98 ntBASIC0.54□□□□□ -2.32
Ccdc3Q9D6Y1 Gm22704-201ENSMUST00000083027 137 ntBASIC0.54□□□□□ -2.32
Ccdc3Q9D6Y1 Gm24042-201ENSMUST00000083114 103 ntBASIC0.54□□□□□ -2.32
Ccdc3Q9D6Y1 Gm23013-201ENSMUST00000104146 106 ntBASIC0.53□□□□□ -2.32
Ccdc3Q9D6Y1 Gm23203-201ENSMUST00000104374 107 ntBASIC0.53□□□□□ -2.32
Ccdc3Q9D6Y1 Gm14574-201ENSMUST00000120644 279 ntBASIC0.53□□□□□ -2.32
Ccdc3Q9D6Y1 Gm23898-201ENSMUST00000158111 103 ntBASIC0.53□□□□□ -2.32
Ccdc3Q9D6Y1 Gm23542-201ENSMUST00000158208 96 ntBASIC0.53□□□□□ -2.32
Ccdc3Q9D6Y1 Gm26022-201ENSMUST00000158663 108 ntBASIC0.53□□□□□ -2.32
Ccdc3Q9D6Y1 Mir6364-201ENSMUST00000183396 86 ntBASIC0.53□□□□□ -2.32
Ccdc3Q9D6Y1 Gm19777-201ENSMUST00000191940 358 ntBASIC0.53□□□□□ -2.32
Ccdc3Q9D6Y1 Gm42622-201ENSMUST00000197229 355 ntBASIC0.53□□□□□ -2.32
Ccdc3Q9D6Y1 Olfr778-ps1-201ENSMUST00000204517 207 ntBASIC0.53□□□□□ -2.32
Ccdc3Q9D6Y1 Gm44921-201ENSMUST00000205290 301 ntBASIC0.53□□□□□ -2.32
Ccdc3Q9D6Y1 Gm5023-201ENSMUST00000217442 587 ntBASIC0.53□□□□□ -2.32
Ccdc3Q9D6Y1 AC122905.2-201ENSMUST00000220325 269 ntBASIC0.53□□□□□ -2.32
Ccdc3Q9D6Y1 CT025603.4-201ENSMUST00000225777 413 ntBASIC0.53□□□□□ -2.32
Ccdc3Q9D6Y1 AC108945.1-201ENSMUST00000226477 94 ntBASIC0.53□□□□□ -2.32
Ccdc3Q9D6Y1 Gm26329-201ENSMUST00000093723 110 ntBASIC0.53□□□□□ -2.32
Ccdc3Q9D6Y1 Trgj3-201ENSMUST00000103562 60 ntAPPRIS P1 BASIC0.52□□□□□ -2.33
Ccdc3Q9D6Y1 Gm23130-201ENSMUST00000104252 74 ntBASIC0.52□□□□□ -2.33
Ccdc3Q9D6Y1 Gm23708-201ENSMUST00000104367 123 ntBASIC0.52□□□□□ -2.33
Ccdc3Q9D6Y1 Gm15379-201ENSMUST00000121224 648 ntBASIC0.52□□□□□ -2.33
Ccdc3Q9D6Y1 1700120G11Rik-201ENSMUST00000150273 491 ntTSL 1 (best) BASIC0.52□□□□□ -2.33
Ccdc3Q9D6Y1 Gm21060-201ENSMUST00000179346 168 ntAPPRIS P1 BASIC0.52□□□□□ -2.33
Ccdc3Q9D6Y1 Gm29229-201ENSMUST00000188874 323 ntBASIC0.52□□□□□ -2.33
Ccdc3Q9D6Y1 Gm18213-201ENSMUST00000207850 178 ntBASIC0.52□□□□□ -2.33
Ccdc3Q9D6Y1 Rny3-201ENSMUST00000083011 102 ntBASIC0.52□□□□□ -2.33
Ccdc3Q9D6Y1 AC160115.1-201ENSMUST00000224678 1574 ntBASIC0.52□□□□□ -2.33
Ccdc3Q9D6Y1 Gm11115-201ENSMUST00000113255 54 ntAPPRIS P1 TSL 5 BASIC0.51□□□□□ -2.33
Ccdc3Q9D6Y1 Sval2-202ENSMUST00000119995 463 ntTSL 3 BASIC0.51□□□□□ -2.33
Ccdc3Q9D6Y1 Gm13565-201ENSMUST00000133596 700 ntTSL 1 (best) BASIC0.51□□□□□ -2.33
Ccdc3Q9D6Y1 Gm13625-201ENSMUST00000149283 480 ntTSL 5 BASIC0.51□□□□□ -2.33
Ccdc3Q9D6Y1 Mir3070a-201ENSMUST00000175468 89 ntBASIC0.51□□□□□ -2.33
Ccdc3Q9D6Y1 Gm25671-201ENSMUST00000178612 105 ntBASIC0.51□□□□□ -2.33
Ccdc3Q9D6Y1 Gm23307-201ENSMUST00000179167 105 ntBASIC0.51□□□□□ -2.33
Ccdc3Q9D6Y1 Gm25286-201ENSMUST00000179790 105 ntBASIC0.51□□□□□ -2.33
Ccdc3Q9D6Y1 Gm23148-201ENSMUST00000180367 107 ntBASIC0.51□□□□□ -2.33
Ccdc3Q9D6Y1 Gm27540-201ENSMUST00000184950 187 ntBASIC0.51□□□□□ -2.33
Ccdc3Q9D6Y1 Gm28288-201ENSMUST00000191019 214 ntBASIC0.51□□□□□ -2.33
Ccdc3Q9D6Y1 Gm45543-201ENSMUST00000209327 88 ntBASIC0.51□□□□□ -2.33
Ccdc3Q9D6Y1 CT033781.2-201ENSMUST00000221113 153 ntBASIC0.51□□□□□ -2.33
Ccdc3Q9D6Y1 Gm25078-201ENSMUST00000082530 107 ntBASIC0.51□□□□□ -2.33
Ccdc3Q9D6Y1 Gm25258-201ENSMUST00000083049 107 ntBASIC0.51□□□□□ -2.33
Ccdc3Q9D6Y1 Mir19b-2-201ENSMUST00000083539 84 ntBASIC0.51□□□□□ -2.33
Ccdc3Q9D6Y1 Gm26474-201ENSMUST00000116762 122 ntBASIC0.5□□□□□ -2.33
Ccdc3Q9D6Y1 Gm12785-201ENSMUST00000122052 172 ntBASIC0.5□□□□□ -2.33
Ccdc3Q9D6Y1 Gm12068-201ENSMUST00000153153 376 ntTSL 3 BASIC0.5□□□□□ -2.33
Ccdc3Q9D6Y1 Gm25643-201ENSMUST00000158874 103 ntBASIC0.5□□□□□ -2.33
Ccdc3Q9D6Y1 Gm44465-201ENSMUST00000199536 114 ntBASIC0.5□□□□□ -2.33
Ccdc3Q9D6Y1 Gm44410-201ENSMUST00000203151 341 ntTSL 3 BASIC0.5□□□□□ -2.33
Ccdc3Q9D6Y1 Gm43976-201ENSMUST00000203637 235 ntBASIC0.5□□□□□ -2.33
Ccdc3Q9D6Y1 Gm44473-201ENSMUST00000204039 152 ntBASIC0.5□□□□□ -2.33
Ccdc3Q9D6Y1 Gm44687-201ENSMUST00000204975 235 ntBASIC0.5□□□□□ -2.33
Ccdc3Q9D6Y1 AC167192.1-201ENSMUST00000225908 139 ntBASIC0.5□□□□□ -2.33
Ccdc3Q9D6Y1 Gm22743-201ENSMUST00000083445 133 ntBASIC0.5□□□□□ -2.33
Ccdc3Q9D6Y1 Snord33-201ENSMUST00000083694 84 ntBASIC0.5□□□□□ -2.33
Ccdc3Q9D6Y1 Gm25627-201ENSMUST00000084003 153 ntBASIC0.5□□□□□ -2.33
Ccdc3Q9D6Y1 Gm26135-201ENSMUST00000101993 72 ntBASIC0.49□□□□□ -2.33
Ccdc3Q9D6Y1 Gm11856-201ENSMUST00000118712 276 ntBASIC0.49□□□□□ -2.33
Ccdc3Q9D6Y1 Gm24440-201ENSMUST00000157236 63 ntBASIC0.49□□□□□ -2.33
Ccdc3Q9D6Y1 Gm26401-201ENSMUST00000158502 76 ntBASIC0.49□□□□□ -2.33
Ccdc3Q9D6Y1 Gm24512-201ENSMUST00000174963 65 ntBASIC0.49□□□□□ -2.33
Ccdc3Q9D6Y1 Mir15a-201ENSMUST00000175266 84 ntBASIC0.49□□□□□ -2.33
Ccdc3Q9D6Y1 Gm16404-201ENSMUST00000177739 468 ntBASIC0.49□□□□□ -2.33
Ccdc3Q9D6Y1 Snord50b-201ENSMUST00000178497 72 ntBASIC0.49□□□□□ -2.33
Ccdc3Q9D6Y1 Gm14598-201ENSMUST00000180109 468 ntBASIC0.49□□□□□ -2.33
Ccdc3Q9D6Y1 Gm14625-201ENSMUST00000180231 468 ntBASIC0.49□□□□□ -2.33
Ccdc3Q9D6Y1 Zfp654-201ENSMUST00000052588 4741 ntAPPRIS P3 TSL 1 (best) BASIC0.49□□□□□ -2.33
Retrieved 100 of 76,532 protein–RNA pairs in 84.2 ms