Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Gm23109-201ENSMUST00000116867 126 ntBASIC1.99□□□□□ -2.09
ShhQ62226 n-R5s15-201ENSMUST00000122635 111 ntBASIC1.99□□□□□ -2.09
ShhQ62226 Gm22586-201ENSMUST00000157507 122 ntBASIC1.99□□□□□ -2.09
ShhQ62226 Gm25914-201ENSMUST00000157618 153 ntBASIC1.99□□□□□ -2.09
ShhQ62226 Gm24394-201ENSMUST00000158141 123 ntBASIC1.99□□□□□ -2.09
ShhQ62226 Gm22989-201ENSMUST00000158313 86 ntBASIC1.99□□□□□ -2.09
ShhQ62226 Mir669n-201ENSMUST00000158636 54 ntBASIC1.99□□□□□ -2.09
ShhQ62226 Mir669k-201ENSMUST00000177742 127 ntBASIC1.99□□□□□ -2.09
ShhQ62226 Gm25673-201ENSMUST00000179957 127 ntBASIC1.99□□□□□ -2.09
ShhQ62226 Gm9156-201ENSMUST00000189660 463 ntBASIC1.99□□□□□ -2.09
ShhQ62226 Gm37997-201ENSMUST00000193515 267 ntBASIC1.99□□□□□ -2.09
ShhQ62226 Mir7217-201ENSMUST00000200304 62 ntBASIC1.99□□□□□ -2.09
ShhQ62226 AC163289.1-201ENSMUST00000215919 262 ntBASIC1.99□□□□□ -2.09
ShhQ62226 Gm38407-201ENSMUST00000218017 474 ntTSL 2 BASIC1.99□□□□□ -2.09
ShhQ62226 Mir30d-201ENSMUST00000083503 82 ntBASIC1.99□□□□□ -2.09
ShhQ62226 Zfp966-201ENSMUST00000108949 2939 ntAPPRIS P1 TSL 3 BASIC1.99□□□□□ -2.09
ShhQ62226 Olfr801-203ENSMUST00000213294 4045 ntAPPRIS P1 TSL 5 BASIC1.99□□□□□ -2.09
ShhQ62226 Olfr821-203ENSMUST00000214177 1929 ntAPPRIS P1 TSL 5 BASIC1.98□□□□□ -2.09
ShhQ62226 Mir301b-201ENSMUST00000102333 97 ntBASIC1.98□□□□□ -2.09
ShhQ62226 Gm22083-201ENSMUST00000157586 102 ntBASIC1.98□□□□□ -2.09
ShhQ62226 Gm23043-201ENSMUST00000157890 109 ntBASIC1.98□□□□□ -2.09
ShhQ62226 Gm26004-201ENSMUST00000158804 116 ntBASIC1.98□□□□□ -2.09
ShhQ62226 Gm37624-201ENSMUST00000193751 219 ntBASIC1.98□□□□□ -2.09
ShhQ62226 Gm3724-201ENSMUST00000197957 349 ntBASIC1.98□□□□□ -2.09
ShhQ62226 Gm43199-201ENSMUST00000200019 307 ntBASIC1.98□□□□□ -2.09
ShhQ62226 AC098718.1-201ENSMUST00000226166 175 ntBASIC1.98□□□□□ -2.09
ShhQ62226 AC124182.1-201ENSMUST00000227091 321 ntBASIC1.98□□□□□ -2.09
ShhQ62226 Gm26922-201ENSMUST00000082687 72 ntBASIC1.98□□□□□ -2.09
ShhQ62226 Olfr1442-203ENSMUST00000208494 3593 ntAPPRIS P1 TSL 3 BASIC1.98□□□□□ -2.09
ShhQ62226 Gm43473-201ENSMUST00000200442 5997 ntBASIC1.97□□□□□ -2.09
ShhQ62226 Gm22337-201ENSMUST00000157721 132 ntBASIC1.97□□□□□ -2.09
ShhQ62226 Gm37027-201ENSMUST00000194642 256 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
ShhQ62226 Mir721-201ENSMUST00000200230 88 ntBASIC1.97□□□□□ -2.09
ShhQ62226 Gm45791-201ENSMUST00000212908 352 ntBASIC1.97□□□□□ -2.09
ShhQ62226 Gm46993-201ENSMUST00000220708 259 ntBASIC1.97□□□□□ -2.09
ShhQ62226 Mir302d-201ENSMUST00000083513 66 ntBASIC1.97□□□□□ -2.09
ShhQ62226 Gm18795-201ENSMUST00000222371 3266 ntTSL 5 BASIC1.97□□□□□ -2.09
ShhQ62226 Gm26624-201ENSMUST00000181486 3769 ntTSL 5 BASIC1.97□□□□□ -2.09
ShhQ62226 Gm8935-202ENSMUST00000105727 1959 ntBASIC1.96□□□□□ -2.1
ShhQ62226 Olfr1153-202ENSMUST00000217436 2144 ntAPPRIS P1 TSL 5 BASIC1.96□□□□□ -2.1
ShhQ62226 Gm25538-201ENSMUST00000101943 107 ntBASIC1.96□□□□□ -2.1
ShhQ62226 Gm25068-201ENSMUST00000103895 110 ntBASIC1.96□□□□□ -2.1
ShhQ62226 Gm24010-201ENSMUST00000157731 282 ntBASIC1.96□□□□□ -2.1
ShhQ62226 Gm23209-201ENSMUST00000158667 110 ntBASIC1.96□□□□□ -2.1
ShhQ62226 Gm16561-201ENSMUST00000163001 192 ntBASIC1.96□□□□□ -2.1
ShhQ62226 Gm24638-201ENSMUST00000179807 132 ntBASIC1.96□□□□□ -2.1
ShhQ62226 Gm28434-201ENSMUST00000187738 500 ntAPPRIS P1 TSL 5 BASIC1.96□□□□□ -2.1
ShhQ62226 Gm36189-201ENSMUST00000204113 523 ntBASIC1.96□□□□□ -2.1
ShhQ62226 AC168056.1-201ENSMUST00000225270 180 ntBASIC1.96□□□□□ -2.1
ShhQ62226 Gm25788-201ENSMUST00000082721 131 ntBASIC1.96□□□□□ -2.1
ShhQ62226 Gm42664-201ENSMUST00000199417 3239 ntBASIC1.96□□□□□ -2.1
ShhQ62226 Gm27047-201ENSMUST00000183072 1819 ntBASIC1.96□□□□□ -2.1
ShhQ62226 Mir297a-2-201ENSMUST00000103795 90 ntBASIC1.95□□□□□ -2.1
ShhQ62226 2210417A02Rik-201ENSMUST00000150265 550 ntTSL 1 (best) BASIC1.95□□□□□ -2.1
ShhQ62226 Gm25825-201ENSMUST00000157091 124 ntBASIC1.95□□□□□ -2.1
ShhQ62226 Gm24900-201ENSMUST00000158128 134 ntBASIC1.95□□□□□ -2.1
ShhQ62226 Gm23854-201ENSMUST00000158378 108 ntBASIC1.95□□□□□ -2.1
ShhQ62226 Gm25267-201ENSMUST00000158522 63 ntBASIC1.95□□□□□ -2.1
ShhQ62226 Gm38183-201ENSMUST00000193189 205 ntBASIC1.95□□□□□ -2.1
ShhQ62226 Gm5010-201ENSMUST00000213131 260 ntBASIC1.95□□□□□ -2.1
ShhQ62226 Gm24929-201ENSMUST00000083403 139 ntBASIC1.95□□□□□ -2.1
ShhQ62226 Mir429-201ENSMUST00000083493 83 ntBASIC1.95□□□□□ -2.1
ShhQ62226 Mir93-201ENSMUST00000083593 88 ntBASIC1.95□□□□□ -2.1
ShhQ62226 Mir301-201ENSMUST00000083655 86 ntBASIC1.95□□□□□ -2.1
ShhQ62226 Gm22866-201ENSMUST00000083947 177 ntBASIC1.95□□□□□ -2.1
ShhQ62226 Olfr389-203ENSMUST00000215418 3417 ntAPPRIS P1 TSL 5 BASIC1.94□□□□□ -2.1
ShhQ62226 Traj20-201ENSMUST00000103721 58 ntAPPRIS P1 BASIC1.94□□□□□ -2.1
ShhQ62226 Gm10959-201ENSMUST00000106431 72 ntAPPRIS P1 TSL 5 BASIC1.94□□□□□ -2.1
ShhQ62226 Gm23267-201ENSMUST00000178490 132 ntBASIC1.94□□□□□ -2.1
ShhQ62226 Gm27928-201ENSMUST00000183747 256 ntBASIC1.94□□□□□ -2.1
ShhQ62226 Mir300-201ENSMUST00000083485 79 ntBASIC1.94□□□□□ -2.1
ShhQ62226 Olfr1029-202ENSMUST00000217244 3743 ntAPPRIS P1 TSL 5 BASIC1.94□□□□□ -2.1
ShhQ62226 Gm16510-201ENSMUST00000153501 249 ntBASIC1.93□□□□□ -2.1
ShhQ62226 Gm25371-201ENSMUST00000158162 101 ntBASIC1.93□□□□□ -2.1
ShhQ62226 Gm22093-201ENSMUST00000158980 111 ntBASIC1.93□□□□□ -2.1
ShhQ62226 Gm37557-201ENSMUST00000191640 139 ntBASIC1.93□□□□□ -2.1
ShhQ62226 Gm37693-201ENSMUST00000194562 234 ntBASIC1.93□□□□□ -2.1
ShhQ62226 Gpr174-202ENSMUST00000117310 3536 ntAPPRIS P1 TSL 1 (best) BASIC1.92□□□□□ -2.1
ShhQ62226 Gm24098-201ENSMUST00000102075 109 ntBASIC1.92□□□□□ -2.1
ShhQ62226 Gm25381-201ENSMUST00000102078 109 ntBASIC1.92□□□□□ -2.1
ShhQ62226 Gm6025-201ENSMUST00000121517 201 ntBASIC1.92□□□□□ -2.1
ShhQ62226 Gm22279-201ENSMUST00000157200 93 ntBASIC1.92□□□□□ -2.1
ShhQ62226 Gm25069-201ENSMUST00000175238 86 ntBASIC1.92□□□□□ -2.1
ShhQ62226 Mir7039-201ENSMUST00000183852 85 ntBASIC1.92□□□□□ -2.1
ShhQ62226 Mir6388-201ENSMUST00000184417 75 ntBASIC1.92□□□□□ -2.1
ShhQ62226 AC154994.1-201ENSMUST00000217395 302 ntBASIC1.92□□□□□ -2.1
ShhQ62226 AC134601.3-201ENSMUST00000221682 154 ntBASIC1.92□□□□□ -2.1
ShhQ62226 AC127371.3-201ENSMUST00000228129 415 ntBASIC1.92□□□□□ -2.1
ShhQ62226 Gm25357-201ENSMUST00000082745 72 ntBASIC1.92□□□□□ -2.1
ShhQ62226 Snora69-201ENSMUST00000083708 131 ntBASIC1.92□□□□□ -2.1
ShhQ62226 AC153966.1-201ENSMUST00000220106 3764 ntBASIC1.91□□□□□ -2.1
ShhQ62226 Olfr1151-202ENSMUST00000217376 2866 ntAPPRIS P1 TSL 5 BASIC1.91□□□□□ -2.1
ShhQ62226 Igkv4-63-201ENSMUST00000103351 286 ntAPPRIS P1 BASIC1.91□□□□□ -2.1
ShhQ62226 Gm22768-201ENSMUST00000158366 153 ntBASIC1.91□□□□□ -2.1
ShhQ62226 Trav5n-3-201ENSMUST00000164511 270 ntBASIC1.91□□□□□ -2.1
ShhQ62226 Gm22348-201ENSMUST00000178674 79 ntBASIC1.91□□□□□ -2.1
ShhQ62226 Gm25813-201ENSMUST00000082748 191 ntBASIC1.91□□□□□ -2.1
ShhQ62226 Gm10203-201ENSMUST00000087348 198 ntAPPRIS P1 TSL 5 BASIC1.91□□□□□ -2.1
ShhQ62226 Olfr618-202ENSMUST00000214883 3304 ntAPPRIS P1 TSL 5 BASIC1.91□□□□□ -2.1
ShhQ62226 Knl1-202ENSMUST00000028802 7800 ntAPPRIS P1 TSL 5 BASIC1.9□□□□□ -2.11
Retrieved 100 of 76,532 protein–RNA pairs in 86.1 ms