Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 Gm22503-201ENSMUST00000158983 115 ntBASIC3.5□□□□□ -1.85
Rnf40Q3U319 Olfr1211-203ENSMUST00000213412 4173 ntAPPRIS P1 TSL 5 BASIC3.5□□□□□ -1.85
Rnf40Q3U319 Dpp10-201ENSMUST00000112603 4477 ntAPPRIS ALT2 TSL 5 BASIC3.5□□□□□ -1.85
Rnf40Q3U319 Olfr730-202ENSMUST00000205837 4903 ntAPPRIS ALT1 BASIC3.49□□□□□ -1.85
Rnf40Q3U319 Gm3081-201ENSMUST00000193413 3025 ntBASIC3.49□□□□□ -1.85
Rnf40Q3U319 Olfr1245-202ENSMUST00000217402 2610 ntAPPRIS P1 TSL 5 BASIC3.49□□□□□ -1.85
Rnf40Q3U319 Naaladl2-202ENSMUST00000203414 9330 ntAPPRIS P1 TSL 5 BASIC3.49□□□□□ -1.85
Rnf40Q3U319 Olfr188-ps1-201ENSMUST00000205766 4706 ntTSL 5 BASIC3.49□□□□□ -1.85
Rnf40Q3U319 Gm26148-201ENSMUST00000157430 68 ntBASIC3.49□□□□□ -1.85
Rnf40Q3U319 Gm22535-201ENSMUST00000158174 119 ntBASIC3.49□□□□□ -1.85
Rnf40Q3U319 Rnu7-201ENSMUST00000158458 62 ntBASIC3.49□□□□□ -1.85
Rnf40Q3U319 Gm17117-201ENSMUST00000163665 299 ntBASIC3.49□□□□□ -1.85
Rnf40Q3U319 Gm27903-201ENSMUST00000175482 126 ntBASIC3.49□□□□□ -1.85
Rnf40Q3U319 Gm26073-201ENSMUST00000179906 127 ntBASIC3.49□□□□□ -1.85
Rnf40Q3U319 Trgj2-201ENSMUST00000197113 60 ntAPPRIS P1 BASIC3.49□□□□□ -1.85
Rnf40Q3U319 AC153930.1-201ENSMUST00000220016 358 ntTSL 3 BASIC3.49□□□□□ -1.85
Rnf40Q3U319 Hspe1-ps2-201ENSMUST00000051437 312 ntBASIC3.49□□□□□ -1.85
Rnf40Q3U319 mt-Tl2-201ENSMUST00000082417 71 ntBASIC3.49□□□□□ -1.85
Rnf40Q3U319 Gm25696-201ENSMUST00000082900 105 ntBASIC3.49□□□□□ -1.85
Rnf40Q3U319 Pak3-202ENSMUST00000112863 8657 ntAPPRIS ALT1 TSL 5 BASIC3.49□□□□□ -1.85
Rnf40Q3U319 Olfr592-203ENSMUST00000218618 5978 ntTSL 5 BASIC3.49□□□□□ -1.85
Rnf40Q3U319 Olfr389-203ENSMUST00000215418 3417 ntAPPRIS P1 TSL 5 BASIC3.48□□□□□ -1.85
Rnf40Q3U319 Gm13136-201ENSMUST00000121031 2950 ntBASIC3.48□□□□□ -1.85
Rnf40Q3U319 Olfr509-203ENSMUST00000214861 3535 ntAPPRIS P1 TSL 5 BASIC3.48□□□□□ -1.85
Rnf40Q3U319 Traj12-201ENSMUST00000103729 58 ntAPPRIS P1 BASIC3.48□□□□□ -1.85
Rnf40Q3U319 Gm22034-201ENSMUST00000157283 134 ntBASIC3.48□□□□□ -1.85
Rnf40Q3U319 Gm23065-201ENSMUST00000158236 130 ntBASIC3.48□□□□□ -1.85
Rnf40Q3U319 Gm28002-201ENSMUST00000184832 100 ntBASIC3.48□□□□□ -1.85
Rnf40Q3U319 Gm42684-201ENSMUST00000197663 3615 ntBASIC3.48□□□□□ -1.85
Rnf40Q3U319 Olfr1402-202ENSMUST00000199297 4051 ntAPPRIS P1 TSL 5 BASIC3.48□□□□□ -1.85
Rnf40Q3U319 Olfr1404-202ENSMUST00000216556 3305 ntAPPRIS P1 TSL 5 BASIC3.47□□□□□ -1.85
Rnf40Q3U319 Traj21-201ENSMUST00000103720 57 ntAPPRIS P1 BASIC3.47□□□□□ -1.85
Rnf40Q3U319 Gm15799-201ENSMUST00000120899 289 ntBASIC3.47□□□□□ -1.85
Rnf40Q3U319 Gm22605-201ENSMUST00000158289 108 ntBASIC3.47□□□□□ -1.85
Rnf40Q3U319 Gm22089-201ENSMUST00000158336 102 ntBASIC3.47□□□□□ -1.85
Rnf40Q3U319 Gm22889-201ENSMUST00000158639 58 ntBASIC3.47□□□□□ -1.85
Rnf40Q3U319 Gm18433-202ENSMUST00000195682 196 ntBASIC3.47□□□□□ -1.85
Rnf40Q3U319 Gm44325-201ENSMUST00000196757 77 ntBASIC3.47□□□□□ -1.85
Rnf40Q3U319 Klk1b18-ps-201ENSMUST00000205780 167 ntBASIC3.47□□□□□ -1.85
Rnf40Q3U319 Gm25337-201ENSMUST00000083723 104 ntBASIC3.47□□□□□ -1.85
Rnf40Q3U319 AC158979.1-201ENSMUST00000223594 2252 ntBASIC3.47□□□□□ -1.85
Rnf40Q3U319 Olfr1454-204ENSMUST00000217568 4215 ntAPPRIS P1 TSL 5 BASIC3.47□□□□□ -1.85
Rnf40Q3U319 Dmd-203ENSMUST00000114000 14910 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
Rnf40Q3U319 Ppp4r3c-ps-201ENSMUST00000151416 2445 ntBASIC3.46□□□□□ -1.85
Rnf40Q3U319 Gm9696-201ENSMUST00000094227 3050 ntTSL 2 BASIC3.46□□□□□ -1.86
Rnf40Q3U319 Olfr748-202ENSMUST00000213101 3632 ntAPPRIS P1 TSL 5 BASIC3.46□□□□□ -1.86
Rnf40Q3U319 Gm13433-201ENSMUST00000121701 240 ntBASIC3.46□□□□□ -1.86
Rnf40Q3U319 Gm14564-201ENSMUST00000122159 294 ntBASIC3.46□□□□□ -1.86
Rnf40Q3U319 Gm44354-201ENSMUST00000196017 143 ntBASIC3.46□□□□□ -1.86
Rnf40Q3U319 Gm9712-201ENSMUST00000210842 311 ntBASIC3.46□□□□□ -1.86
Rnf40Q3U319 Gm26696-201ENSMUST00000181941 2848 ntBASIC3.46□□□□□ -1.86
Rnf40Q3U319 Olfr898-203ENSMUST00000217063 4169 ntAPPRIS ALT2 TSL 5 BASIC3.45□□□□□ -1.86
Rnf40Q3U319 Olfr849-202ENSMUST00000217273 6140 ntAPPRIS P1 TSL 5 BASIC3.45□□□□□ -1.86
Rnf40Q3U319 Olfr509-204ENSMUST00000215075 3418 ntAPPRIS P1 TSL 5 BASIC3.45□□□□□ -1.86
Rnf40Q3U319 4930522L14Rik-202ENSMUST00000112547 2001 ntAPPRIS P1 TSL 5 BASIC3.45□□□□□ -1.86
Rnf40Q3U319 Gm25169-201ENSMUST00000104190 129 ntBASIC3.45□□□□□ -1.86
Rnf40Q3U319 Gm6954-201ENSMUST00000117416 225 ntBASIC3.45□□□□□ -1.86
Rnf40Q3U319 n-R5s73-201ENSMUST00000122508 107 ntBASIC3.45□□□□□ -1.86
Rnf40Q3U319 Gm25884-201ENSMUST00000157782 62 ntBASIC3.45□□□□□ -1.86
Rnf40Q3U319 Gm23761-201ENSMUST00000158347 104 ntBASIC3.45□□□□□ -1.86
Rnf40Q3U319 Trav5d-3-201ENSMUST00000170041 270 ntBASIC3.45□□□□□ -1.86
Rnf40Q3U319 Mir6345-201ENSMUST00000184286 128 ntBASIC3.45□□□□□ -1.86
Rnf40Q3U319 Mir21c-201ENSMUST00000184910 78 ntBASIC3.45□□□□□ -1.86
Rnf40Q3U319 Gm9967-203ENSMUST00000206903 408 ntTSL 3 BASIC3.45□□□□□ -1.86
Rnf40Q3U319 Gm45796-201ENSMUST00000212483 114 ntBASIC3.45□□□□□ -1.86
Rnf40Q3U319 AC126691.1-201ENSMUST00000226534 202 ntBASIC3.45□□□□□ -1.86
Rnf40Q3U319 Snord118-201ENSMUST00000082965 135 ntBASIC3.45□□□□□ -1.86
Rnf40Q3U319 Gm22739-201ENSMUST00000083437 160 ntBASIC3.45□□□□□ -1.86
Rnf40Q3U319 AC124456.1-201ENSMUST00000217391 2597 ntBASIC3.45□□□□□ -1.86
Rnf40Q3U319 AC153966.1-201ENSMUST00000220106 3764 ntBASIC3.44□□□□□ -1.86
Rnf40Q3U319 Olfr881-202ENSMUST00000212489 4237 ntAPPRIS P1 TSL 3 BASIC3.44□□□□□ -1.86
Rnf40Q3U319 Vmn1r51-207ENSMUST00000227766 4218 ntAPPRIS P1 BASIC3.44□□□□□ -1.86
Rnf40Q3U319 Gm15391-201ENSMUST00000147509 257 ntTSL 3 BASIC3.44□□□□□ -1.86
Rnf40Q3U319 Gm22792-201ENSMUST00000157225 133 ntBASIC3.44□□□□□ -1.86
Rnf40Q3U319 Gm26099-201ENSMUST00000157248 109 ntBASIC3.44□□□□□ -1.86
Rnf40Q3U319 Gm23540-201ENSMUST00000157543 164 ntBASIC3.44□□□□□ -1.86
Rnf40Q3U319 Gm27987-201ENSMUST00000184023 93 ntBASIC3.44□□□□□ -1.86
Rnf40Q3U319 Mir1a-1-201ENSMUST00000093635 77 ntBASIC3.44□□□□□ -1.86
Rnf40Q3U319 Gm15697-201ENSMUST00000121946 2902 ntBASIC3.44□□□□□ -1.86
Rnf40Q3U319 Cdk13-205ENSMUST00000222800 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC3.44□□□□□ -1.86
Rnf40Q3U319 Vmn2r37-201ENSMUST00000072787 3081 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
Rnf40Q3U319 Tug1-201ENSMUST00000132077 6719 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
Rnf40Q3U319 Gm26624-201ENSMUST00000181486 3769 ntTSL 5 BASIC3.43□□□□□ -1.86
Rnf40Q3U319 Gm24403-201ENSMUST00000104616 130 ntBASIC3.43□□□□□ -1.86
Rnf40Q3U319 Gm26276-201ENSMUST00000157099 109 ntBASIC3.43□□□□□ -1.86
Rnf40Q3U319 Gm22522-201ENSMUST00000158271 151 ntBASIC3.43□□□□□ -1.86
Rnf40Q3U319 Gm28010-201ENSMUST00000179485 126 ntBASIC3.43□□□□□ -1.86
Rnf40Q3U319 Mir3073b-201ENSMUST00000199383 60 ntBASIC3.43□□□□□ -1.86
Rnf40Q3U319 Gm45533-201ENSMUST00000210295 165 ntTSL 5 BASIC3.43□□□□□ -1.86
Rnf40Q3U319 Mir193a-201ENSMUST00000083461 66 ntBASIC3.43□□□□□ -1.86
Rnf40Q3U319 Olfr1130-202ENSMUST00000216580 2648 ntAPPRIS P1 TSL 5 BASIC3.43□□□□□ -1.86
Rnf40Q3U319 Gm14288-201ENSMUST00000109020 3438 ntAPPRIS P2 TSL 1 (best) BASIC3.43□□□□□ -1.86
Rnf40Q3U319 Gm42770-201ENSMUST00000199657 4155 ntBASIC3.42□□□□□ -1.86
Rnf40Q3U319 Gm22677-201ENSMUST00000116977 108 ntBASIC3.42□□□□□ -1.86
Rnf40Q3U319 Gm6788-201ENSMUST00000166459 270 ntBASIC3.42□□□□□ -1.86
Rnf40Q3U319 Mir1251-201ENSMUST00000175486 84 ntBASIC3.42□□□□□ -1.86
Rnf40Q3U319 Gm3702-201ENSMUST00000211754 346 ntBASIC3.42□□□□□ -1.86
Rnf40Q3U319 Gm25205-201ENSMUST00000082841 103 ntBASIC3.42□□□□□ -1.86
Rnf40Q3U319 Olfr1270-204ENSMUST00000215975 4854 ntAPPRIS P1 TSL 5 BASIC3.42□□□□□ -1.86
Rnf40Q3U319 Gm37143-201ENSMUST00000195180 3259 ntBASIC3.42□□□□□ -1.86
Retrieved 100 of 76,532 protein–RNA pairs in 82.5 ms