Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 AC153964.2-201ENSMUST00000217704 2474 ntBASIC2.61□□□□□ -1.99
Ddb1Q3U1J4 Gm25068-201ENSMUST00000103895 110 ntBASIC2.6□□□□□ -1.99
Ddb1Q3U1J4 Gm14588-201ENSMUST00000119895 172 ntBASIC2.6□□□□□ -1.99
Ddb1Q3U1J4 Gm15861-201ENSMUST00000120979 339 ntBASIC2.6□□□□□ -1.99
Ddb1Q3U1J4 Gm23983-201ENSMUST00000157142 114 ntBASIC2.6□□□□□ -1.99
Ddb1Q3U1J4 Gm22554-201ENSMUST00000157798 147 ntBASIC2.6□□□□□ -1.99
Ddb1Q3U1J4 Gm25491-201ENSMUST00000158733 308 ntBASIC2.6□□□□□ -1.99
Ddb1Q3U1J4 AC125167.1-201ENSMUST00000198698 141 ntBASIC2.6□□□□□ -1.99
Ddb1Q3U1J4 Gm45116-201ENSMUST00000207392 275 ntBASIC2.6□□□□□ -1.99
Ddb1Q3U1J4 Gm24044-201ENSMUST00000083107 156 ntBASIC2.6□□□□□ -1.99
Ddb1Q3U1J4 Gm22866-201ENSMUST00000083947 177 ntBASIC2.6□□□□□ -1.99
Ddb1Q3U1J4 Trdn-201ENSMUST00000095762 4514 ntAPPRIS P2 TSL 5 BASIC2.59□□□□□ -1.99
Ddb1Q3U1J4 Gm26154-201ENSMUST00000102339 96 ntBASIC2.59□□□□□ -1.99
Ddb1Q3U1J4 Vmn1r-ps120-201ENSMUST00000120288 377 ntBASIC2.59□□□□□ -1.99
Ddb1Q3U1J4 Gm26280-201ENSMUST00000157096 101 ntBASIC2.59□□□□□ -1.99
Ddb1Q3U1J4 Mir21b-201ENSMUST00000184317 108 ntBASIC2.59□□□□□ -1.99
Ddb1Q3U1J4 AC150901.1-201ENSMUST00000208407 145 ntBASIC2.59□□□□□ -1.99
Ddb1Q3U1J4 AC151902.2-201ENSMUST00000226419 301 ntBASIC2.59□□□□□ -1.99
Ddb1Q3U1J4 Gm26454-201ENSMUST00000082682 107 ntBASIC2.59□□□□□ -1.99
Ddb1Q3U1J4 Olfr394-202ENSMUST00000214284 5562 ntAPPRIS P1 TSL 5 BASIC2.59□□□□□ -1.99
Ddb1Q3U1J4 Vmn1r78-202ENSMUST00000228244 7931 ntAPPRIS P1 BASIC2.59□□□□□ -2
Ddb1Q3U1J4 AC161250.2-201ENSMUST00000215114 3107 ntBASIC2.59□□□□□ -2
Ddb1Q3U1J4 Gm24049-201ENSMUST00000102409 100 ntBASIC2.58□□□□□ -2
Ddb1Q3U1J4 Gm13801-201ENSMUST00000120750 160 ntBASIC2.58□□□□□ -2
Ddb1Q3U1J4 Gm13913-201ENSMUST00000121126 260 ntBASIC2.58□□□□□ -2
Ddb1Q3U1J4 Gm22075-201ENSMUST00000158599 192 ntBASIC2.58□□□□□ -2
Ddb1Q3U1J4 Gm16162-201ENSMUST00000162296 297 ntBASIC2.58□□□□□ -2
Ddb1Q3U1J4 Gm25071-201ENSMUST00000175232 70 ntBASIC2.58□□□□□ -2
Ddb1Q3U1J4 Gm26864-201ENSMUST00000181346 156 ntBASIC2.58□□□□□ -2
Ddb1Q3U1J4 AC154282.1-201ENSMUST00000223154 265 ntBASIC2.58□□□□□ -2
Ddb1Q3U1J4 Gm6109-201ENSMUST00000223297 348 ntBASIC2.58□□□□□ -2
Ddb1Q3U1J4 Mir423-201ENSMUST00000083584 109 ntBASIC2.58□□□□□ -2
Ddb1Q3U1J4 Snora33-201ENSMUST00000093556 129 ntBASIC2.58□□□□□ -2
Ddb1Q3U1J4 Gm2869-201ENSMUST00000124359 2621 ntBASIC2.57□□□□□ -2
Ddb1Q3U1J4 Gm25985-201ENSMUST00000122677 107 ntBASIC2.57□□□□□ -2
Ddb1Q3U1J4 Gm22731-201ENSMUST00000158086 94 ntBASIC2.57□□□□□ -2
Ddb1Q3U1J4 Gm22381-201ENSMUST00000158186 107 ntBASIC2.57□□□□□ -2
Ddb1Q3U1J4 Gm22606-201ENSMUST00000158290 103 ntBASIC2.57□□□□□ -2
Ddb1Q3U1J4 Gm24837-201ENSMUST00000158683 81 ntBASIC2.57□□□□□ -2
Ddb1Q3U1J4 Gm24313-201ENSMUST00000082561 133 ntBASIC2.57□□□□□ -2
Ddb1Q3U1J4 Gm25812-201ENSMUST00000082751 103 ntBASIC2.57□□□□□ -2
Ddb1Q3U1J4 Gm42664-201ENSMUST00000199417 3239 ntBASIC2.57□□□□□ -2
Ddb1Q3U1J4 Olfr868-201ENSMUST00000212767 4196 ntAPPRIS P1 TSL 3 BASIC2.57□□□□□ -2
Ddb1Q3U1J4 Gm27047-201ENSMUST00000183072 1819 ntBASIC2.56□□□□□ -2
Ddb1Q3U1J4 Olfr1437-202ENSMUST00000207241 3751 ntAPPRIS P1 TSL 2 BASIC2.56□□□□□ -2
Ddb1Q3U1J4 Tra2b-ps-201ENSMUST00000119906 168 ntBASIC2.56□□□□□ -2
Ddb1Q3U1J4 Gm22553-201ENSMUST00000157797 295 ntBASIC2.56□□□□□ -2
Ddb1Q3U1J4 Gm24676-201ENSMUST00000158758 75 ntBASIC2.56□□□□□ -2
Ddb1Q3U1J4 Gm23267-201ENSMUST00000178490 132 ntBASIC2.56□□□□□ -2
Ddb1Q3U1J4 Gm22510-201ENSMUST00000179304 79 ntBASIC2.56□□□□□ -2
Ddb1Q3U1J4 Gm26336-201ENSMUST00000179449 79 ntBASIC2.56□□□□□ -2
Ddb1Q3U1J4 Gm26390-201ENSMUST00000179628 79 ntBASIC2.56□□□□□ -2
Ddb1Q3U1J4 Gm37557-201ENSMUST00000191640 139 ntBASIC2.56□□□□□ -2
Ddb1Q3U1J4 AC153646.2-201ENSMUST00000220516 109 ntBASIC2.56□□□□□ -2
Ddb1Q3U1J4 AC165138.1-201ENSMUST00000226984 270 ntBASIC2.56□□□□□ -2
Ddb1Q3U1J4 Igkv4-63-201ENSMUST00000103351 286 ntAPPRIS P1 BASIC2.55□□□□□ -2
Ddb1Q3U1J4 Gm26150-201ENSMUST00000157426 151 ntBASIC2.55□□□□□ -2
Ddb1Q3U1J4 Gm23642-201ENSMUST00000157858 258 ntBASIC2.55□□□□□ -2
Ddb1Q3U1J4 Gm22727-201ENSMUST00000158090 116 ntBASIC2.55□□□□□ -2
Ddb1Q3U1J4 Gm22989-201ENSMUST00000158313 86 ntBASIC2.55□□□□□ -2
Ddb1Q3U1J4 Gm22699-201ENSMUST00000175376 105 ntBASIC2.55□□□□□ -2
Ddb1Q3U1J4 Gm23090-201ENSMUST00000177331 78 ntBASIC2.55□□□□□ -2
Ddb1Q3U1J4 Zfp981-203ENSMUST00000179175 2953 ntAPPRIS P1 TSL 2 BASIC2.55□□□□□ -2
Ddb1Q3U1J4 Gm26897-201ENSMUST00000180627 93 ntAPPRIS P1 TSL 5 BASIC2.55□□□□□ -2
Ddb1Q3U1J4 Gm44491-201ENSMUST00000196794 96 ntBASIC2.55□□□□□ -2
Ddb1Q3U1J4 Mir1a-2-201ENSMUST00000198520 72 ntBASIC2.55□□□□□ -2
Ddb1Q3U1J4 Mir721-201ENSMUST00000200230 88 ntBASIC2.55□□□□□ -2
Ddb1Q3U1J4 Gm35736-201ENSMUST00000203681 313 ntBASIC2.55□□□□□ -2
Ddb1Q3U1J4 Gm25142-201ENSMUST00000082698 107 ntBASIC2.55□□□□□ -2
Ddb1Q3U1J4 AC122828.3-201ENSMUST00000223019 3915 ntBASIC2.55□□□□□ -2
Ddb1Q3U1J4 Olfr1208-202ENSMUST00000214121 2823 ntAPPRIS P1 TSL 3 BASIC2.55□□□□□ -2
Ddb1Q3U1J4 Usp9y-201ENSMUST00000091188 8094 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
Ddb1Q3U1J4 Olfr851-202ENSMUST00000214130 7123 ntAPPRIS P1 TSL 5 BASIC2.54□□□□□ -2
Ddb1Q3U1J4 Gm12449-201ENSMUST00000117572 234 ntBASIC2.54□□□□□ -2
Ddb1Q3U1J4 Gm15214-201ENSMUST00000122155 470 ntBASIC2.54□□□□□ -2
Ddb1Q3U1J4 Gm22384-201ENSMUST00000158187 104 ntBASIC2.54□□□□□ -2
Ddb1Q3U1J4 Gm23194-201ENSMUST00000158813 105 ntBASIC2.54□□□□□ -2
Ddb1Q3U1J4 Gm23342-201ENSMUST00000158958 115 ntBASIC2.54□□□□□ -2
Ddb1Q3U1J4 Mir7016-201ENSMUST00000184308 72 ntBASIC2.54□□□□□ -2
Ddb1Q3U1J4 Gm6003-201ENSMUST00000187903 463 ntBASIC2.54□□□□□ -2
Ddb1Q3U1J4 Gm43722-201ENSMUST00000196054 124 ntBASIC2.54□□□□□ -2
Ddb1Q3U1J4 Gm44859-201ENSMUST00000207831 94 ntBASIC2.54□□□□□ -2
Ddb1Q3U1J4 AC126672.1-201ENSMUST00000217096 396 ntBASIC2.54□□□□□ -2
Ddb1Q3U1J4 Gm3333-201ENSMUST00000221637 452 ntTSL 5 BASIC2.54□□□□□ -2
Ddb1Q3U1J4 Gm10217-201ENSMUST00000088080 135 ntAPPRIS P1 TSL 5 BASIC2.54□□□□□ -2
Ddb1Q3U1J4 Gm14914-201ENSMUST00000117576 2031 ntBASIC2.54□□□□□ -2
Ddb1Q3U1J4 Gm22149-201ENSMUST00000104442 136 ntBASIC2.53□□□□□ -2
Ddb1Q3U1J4 Gm25716-201ENSMUST00000158628 104 ntBASIC2.53□□□□□ -2
Ddb1Q3U1J4 Gm25996-201ENSMUST00000175393 117 ntBASIC2.53□□□□□ -2
Ddb1Q3U1J4 Hmga1b-202ENSMUST00000178955 120 ntBASIC2.53□□□□□ -2
Ddb1Q3U1J4 Gm42623-201ENSMUST00000197225 379 ntBASIC2.53□□□□□ -2
Ddb1Q3U1J4 Snord80-202ENSMUST00000199023 77 ntBASIC2.53□□□□□ -2
Ddb1Q3U1J4 Gm44922-201ENSMUST00000206690 90 ntBASIC2.53□□□□□ -2
Ddb1Q3U1J4 AC124456.1-201ENSMUST00000217391 2597 ntBASIC2.53□□□□□ -2.01
Ddb1Q3U1J4 Gm22051-201ENSMUST00000117002 127 ntBASIC2.52□□□□□ -2.01
Ddb1Q3U1J4 Gm24595-201ENSMUST00000122501 110 ntBASIC2.52□□□□□ -2.01
Ddb1Q3U1J4 Gm24632-201ENSMUST00000122770 323 ntBASIC2.52□□□□□ -2.01
Ddb1Q3U1J4 Gm22338-201ENSMUST00000157715 129 ntBASIC2.52□□□□□ -2.01
Ddb1Q3U1J4 Rnu7-201ENSMUST00000158458 62 ntBASIC2.52□□□□□ -2.01
Ddb1Q3U1J4 Gm23967-201ENSMUST00000175062 78 ntBASIC2.52□□□□□ -2.01
Retrieved 100 of 76,532 protein–RNA pairs in 179.7 ms