Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Gm23090-201ENSMUST00000177331 78 ntBASIC2.07□□□□□ -2.08
ShhQ62226 Ttn-225ENSMUST00000190813 300 ntTSL 5 BASIC2.07□□□□□ -2.08
ShhQ62226 AC132384.11-201ENSMUST00000219676 178 ntBASIC2.07□□□□□ -2.08
ShhQ62226 Gm3333-201ENSMUST00000221637 452 ntTSL 5 BASIC2.07□□□□□ -2.08
ShhQ62226 Mucl1-202ENSMUST00000226484 758 ntAPPRIS P5 BASIC2.07□□□□□ -2.08
ShhQ62226 AC122320.1-201ENSMUST00000227233 105 ntBASIC2.07□□□□□ -2.08
ShhQ62226 Gm25142-201ENSMUST00000082698 107 ntBASIC2.07□□□□□ -2.08
ShhQ62226 Gm26204-201ENSMUST00000082906 107 ntBASIC2.07□□□□□ -2.08
ShhQ62226 Gm24044-201ENSMUST00000083107 156 ntBASIC2.07□□□□□ -2.08
ShhQ62226 n-R5s197-201ENSMUST00000083302 119 ntBASIC2.07□□□□□ -2.08
ShhQ62226 AC124456.1-201ENSMUST00000217391 2597 ntBASIC2.07□□□□□ -2.08
ShhQ62226 Gm2869-201ENSMUST00000124359 2621 ntBASIC2.07□□□□□ -2.08
ShhQ62226 Zfy2-201ENSMUST00000115891 2816 ntAPPRIS P1 TSL 1 (best) BASIC2.06□□□□□ -2.08
ShhQ62226 Gm24750-201ENSMUST00000157843 104 ntBASIC2.06□□□□□ -2.08
ShhQ62226 Gm23642-201ENSMUST00000157858 258 ntBASIC2.06□□□□□ -2.08
ShhQ62226 Mir1927-201ENSMUST00000158579 109 ntBASIC2.06□□□□□ -2.08
ShhQ62226 Gm22075-201ENSMUST00000158599 192 ntBASIC2.06□□□□□ -2.08
ShhQ62226 Gm26024-201ENSMUST00000158657 322 ntBASIC2.06□□□□□ -2.08
ShhQ62226 Gm27699-201ENSMUST00000183553 180 ntBASIC2.06□□□□□ -2.08
ShhQ62226 Gm43427-201ENSMUST00000198188 331 ntBASIC2.06□□□□□ -2.08
ShhQ62226 Mir3069-201ENSMUST00000198802 65 ntBASIC2.06□□□□□ -2.08
ShhQ62226 CT010449.1-201ENSMUST00000220624 153 ntBASIC2.06□□□□□ -2.08
ShhQ62226 mt-Atp8-201ENSMUST00000082407 204 ntAPPRIS P1 BASIC2.06□□□□□ -2.08
ShhQ62226 Gm45461-201ENSMUST00000211726 4535 ntBASIC2.06□□□□□ -2.08
ShhQ62226 Gm37602-201ENSMUST00000195187 3310 ntBASIC2.06□□□□□ -2.08
ShhQ62226 Olfr868-202ENSMUST00000212999 4233 ntAPPRIS P1 TSL 3 BASIC2.06□□□□□ -2.08
ShhQ62226 Gm36669-201ENSMUST00000201757 3650 ntTSL 1 (best) BASIC2.06□□□□□ -2.08
ShhQ62226 Tlr8-202ENSMUST00000112170 3431 ntAPPRIS P1 TSL 2 BASIC2.05□□□□□ -2.08
ShhQ62226 Gm3081-201ENSMUST00000193413 3025 ntBASIC2.05□□□□□ -2.08
ShhQ62226 Olfr794-202ENSMUST00000204820 3044 ntAPPRIS P1 TSL 2 BASIC2.05□□□□□ -2.08
ShhQ62226 n-R5s200-201ENSMUST00000104194 113 ntBASIC2.05□□□□□ -2.08
ShhQ62226 Gm16032-201ENSMUST00000118534 168 ntBASIC2.05□□□□□ -2.08
ShhQ62226 Tra2b-ps-201ENSMUST00000119906 168 ntBASIC2.05□□□□□ -2.08
ShhQ62226 Gm15214-201ENSMUST00000122155 470 ntBASIC2.05□□□□□ -2.08
ShhQ62226 Gm25321-201ENSMUST00000122558 102 ntBASIC2.05□□□□□ -2.08
ShhQ62226 Gm22553-201ENSMUST00000157797 295 ntBASIC2.05□□□□□ -2.08
ShhQ62226 AC126672.1-201ENSMUST00000217096 396 ntBASIC2.05□□□□□ -2.08
ShhQ62226 Gm22973-201ENSMUST00000083298 191 ntBASIC2.05□□□□□ -2.08
ShhQ62226 Gm13560-201ENSMUST00000121865 329 ntBASIC2.04□□□□□ -2.08
ShhQ62226 Gm23665-201ENSMUST00000158054 62 ntBASIC2.04□□□□□ -2.08
ShhQ62226 Gm22159-201ENSMUST00000158412 130 ntBASIC2.04□□□□□ -2.08
ShhQ62226 Vmn2r-ps20-201ENSMUST00000179853 382 ntBASIC2.04□□□□□ -2.08
ShhQ62226 Gm44322-201ENSMUST00000196830 115 ntBASIC2.04□□□□□ -2.08
ShhQ62226 Gm45652-201ENSMUST00000210926 3831 ntBASIC2.04□□□□□ -2.08
ShhQ62226 Olfr143-202ENSMUST00000213129 3449 ntAPPRIS ALT2 TSL 5 BASIC2.04□□□□□ -2.08
ShhQ62226 Olfr561-202ENSMUST00000213432 2498 ntAPPRIS P1 TSL 5 BASIC2.04□□□□□ -2.08
ShhQ62226 Snord118-201ENSMUST00000082965 135 ntBASIC2.04□□□□□ -2.08
ShhQ62226 Gm24661-201ENSMUST00000083205 104 ntBASIC2.04□□□□□ -2.08
ShhQ62226 Gm25895-201ENSMUST00000083714 100 ntBASIC2.04□□□□□ -2.08
ShhQ62226 Olfr935-202ENSMUST00000214157 1693 ntAPPRIS P1 TSL 3 BASIC2.03□□□□□ -2.08
ShhQ62226 AC154515.1-201ENSMUST00000226085 2841 ntBASIC2.03□□□□□ -2.08
ShhQ62226 Gm23194-201ENSMUST00000158813 105 ntBASIC2.03□□□□□ -2.08
ShhQ62226 Gm25996-201ENSMUST00000175393 117 ntBASIC2.03□□□□□ -2.08
ShhQ62226 Ranbp2-ps5-201ENSMUST00000185141 379 ntBASIC2.03□□□□□ -2.08
ShhQ62226 Gm28344-201ENSMUST00000185704 279 ntBASIC2.03□□□□□ -2.08
ShhQ62226 Mir3961-201ENSMUST00000198795 59 ntBASIC2.03□□□□□ -2.08
ShhQ62226 AC154636.2-201ENSMUST00000222538 161 ntBASIC2.03□□□□□ -2.08
ShhQ62226 Mir155-201ENSMUST00000083463 65 ntBASIC2.03□□□□□ -2.08
ShhQ62226 Gm25513-201ENSMUST00000083861 162 ntBASIC2.03□□□□□ -2.08
ShhQ62226 Olfr659-202ENSMUST00000214986 4842 ntAPPRIS P1 TSL 5 BASIC2.03□□□□□ -2.08
ShhQ62226 Olfr868-201ENSMUST00000212767 4196 ntAPPRIS P1 TSL 3 BASIC2.02□□□□□ -2.09
ShhQ62226 Mir758-201ENSMUST00000103260 81 ntBASIC2.02□□□□□ -2.09
ShhQ62226 Traj39-201ENSMUST00000103703 63 ntAPPRIS P1 BASIC2.02□□□□□ -2.09
ShhQ62226 Gm24595-201ENSMUST00000122501 110 ntBASIC2.02□□□□□ -2.09
ShhQ62226 Gm22482-201ENSMUST00000122563 359 ntBASIC2.02□□□□□ -2.09
ShhQ62226 Gm24379-201ENSMUST00000122695 86 ntBASIC2.02□□□□□ -2.09
ShhQ62226 Gm24632-201ENSMUST00000122770 323 ntBASIC2.02□□□□□ -2.09
ShhQ62226 Gm22556-201ENSMUST00000157803 100 ntBASIC2.02□□□□□ -2.09
ShhQ62226 Rnu7-201ENSMUST00000158458 62 ntBASIC2.02□□□□□ -2.09
ShhQ62226 Gm26157-201ENSMUST00000158974 126 ntBASIC2.02□□□□□ -2.09
ShhQ62226 Gm23714-201ENSMUST00000179259 105 ntBASIC2.02□□□□□ -2.09
ShhQ62226 Gm15314-201ENSMUST00000120740 1887 ntBASIC2.02□□□□□ -2.09
ShhQ62226 Olfr229-202ENSMUST00000214904 3125 ntAPPRIS P1 TSL 5 BASIC2.02□□□□□ -2.09
ShhQ62226 Olfr1442-202ENSMUST00000207341 3126 ntAPPRIS P1 TSL 3 BASIC2.02□□□□□ -2.09
ShhQ62226 Olfr1442-204ENSMUST00000208657 3148 ntAPPRIS P1 TSL 3 BASIC2.02□□□□□ -2.09
ShhQ62226 Gpr174-207ENSMUST00000178838 4955 ntAPPRIS P1 TSL 2 BASIC2.01□□□□□ -2.09
ShhQ62226 Gm22051-201ENSMUST00000117002 127 ntBASIC2.01□□□□□ -2.09
ShhQ62226 Gm22554-201ENSMUST00000157798 147 ntBASIC2.01□□□□□ -2.09
ShhQ62226 Zfp981-203ENSMUST00000179175 2953 ntAPPRIS P1 TSL 2 BASIC2.01□□□□□ -2.09
ShhQ62226 Gm27285-201ENSMUST00000183875 127 ntBASIC2.01□□□□□ -2.09
ShhQ62226 Gm29604-201ENSMUST00000187176 163 ntBASIC2.01□□□□□ -2.09
ShhQ62226 Gm6003-201ENSMUST00000187903 463 ntBASIC2.01□□□□□ -2.09
ShhQ62226 Mir7232-201ENSMUST00000197929 74 ntBASIC2.01□□□□□ -2.09
ShhQ62226 Gm18188-201ENSMUST00000219386 478 ntBASIC2.01□□□□□ -2.09
ShhQ62226 Gm25402-201ENSMUST00000082966 131 ntBASIC2.01□□□□□ -2.09
ShhQ62226 Gm43373-201ENSMUST00000202552 2870 ntBASIC2.01□□□□□ -2.09
ShhQ62226 Ppp1r3a-201ENSMUST00000045096 6965 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
ShhQ62226 Gm3848-201ENSMUST00000136693 299 ntTSL 1 (best) BASIC2□□□□□ -2.09
ShhQ62226 Gm24015-201ENSMUST00000157725 232 ntBASIC2□□□□□ -2.09
ShhQ62226 Gm24076-201ENSMUST00000158179 94 ntBASIC2□□□□□ -2.09
ShhQ62226 Gm16306-201ENSMUST00000160568 176 ntTSL 3 BASIC2□□□□□ -2.09
ShhQ62226 Gm24333-201ENSMUST00000175101 84 ntBASIC2□□□□□ -2.09
ShhQ62226 Mir1a-2-201ENSMUST00000198520 72 ntBASIC2□□□□□ -2.09
ShhQ62226 Gm42960-201ENSMUST00000202160 241 ntBASIC2□□□□□ -2.09
ShhQ62226 Gm25796-201ENSMUST00000082645 163 ntBASIC2□□□□□ -2.09
ShhQ62226 Gm21876-201ENSMUST00000096511 282 ntAPPRIS P1 TSL 5 BASIC2□□□□□ -2.09
ShhQ62226 Ifi203-209ENSMUST00000156895 3605 ntAPPRIS ALT2 TSL 1 (best) BASIC2□□□□□ -2.09
ShhQ62226 Olfr948-202ENSMUST00000216132 4164 ntAPPRIS P1 TSL 5 BASIC2□□□□□ -2.09
ShhQ62226 Olfr1450-203ENSMUST00000213925 3075 ntAPPRIS P1 TSL 5 BASIC1.99□□□□□ -2.09
ShhQ62226 Gm44527-201ENSMUST00000182210 2945 ntTSL 2 BASIC1.99□□□□□ -2.09
Retrieved 100 of 76,532 protein–RNA pairs in 102.8 ms