Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Mir384-201ENSMUST00000083565 88 ntBASIC2.7□□□□□ -1.98
Ddb1Q3U1J4 Tlr7-202ENSMUST00000112161 3897 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
Ddb1Q3U1J4 Olfr1309-205ENSMUST00000216948 5168 ntAPPRIS P1 TSL 5 BASIC2.69□□□□□ -1.98
Ddb1Q3U1J4 Gm23015-201ENSMUST00000104145 128 ntBASIC2.69□□□□□ -1.98
Ddb1Q3U1J4 Gm14491-201ENSMUST00000121919 199 ntBASIC2.69□□□□□ -1.98
Ddb1Q3U1J4 Gm22535-201ENSMUST00000158174 119 ntBASIC2.69□□□□□ -1.98
Ddb1Q3U1J4 Gm17364-201ENSMUST00000163881 72 ntAPPRIS P1 TSL 5 BASIC2.69□□□□□ -1.98
Ddb1Q3U1J4 Gm17490-201ENSMUST00000166779 63 ntAPPRIS P1 TSL 5 BASIC2.69□□□□□ -1.98
Ddb1Q3U1J4 Mir669k-201ENSMUST00000177742 127 ntBASIC2.69□□□□□ -1.98
Ddb1Q3U1J4 Gm25935-201ENSMUST00000178746 107 ntBASIC2.69□□□□□ -1.98
Ddb1Q3U1J4 Gm25673-201ENSMUST00000179957 127 ntBASIC2.69□□□□□ -1.98
Ddb1Q3U1J4 Gm5002-201ENSMUST00000207145 223 ntBASIC2.69□□□□□ -1.98
Ddb1Q3U1J4 Gm46993-201ENSMUST00000220708 259 ntBASIC2.69□□□□□ -1.98
Ddb1Q3U1J4 Gm22421-201ENSMUST00000083058 107 ntBASIC2.69□□□□□ -1.98
Ddb1Q3U1J4 Gm24615-201ENSMUST00000083268 113 ntBASIC2.69□□□□□ -1.98
Ddb1Q3U1J4 Gm24453-201ENSMUST00000083346 76 ntBASIC2.69□□□□□ -1.98
Ddb1Q3U1J4 Gm26175-201ENSMUST00000083794 131 ntBASIC2.69□□□□□ -1.98
Ddb1Q3U1J4 Gm43706-201ENSMUST00000198767 2652 ntBASIC2.69□□□□□ -1.98
Ddb1Q3U1J4 Zfp735-201ENSMUST00000080407 3746 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
Ddb1Q3U1J4 Rex2-201ENSMUST00000075775 3993 ntAPPRIS P1 TSL 2 BASIC2.68□□□□□ -1.98
Ddb1Q3U1J4 Vmn1r185-204ENSMUST00000227411 4928 ntAPPRIS P1 BASIC2.68□□□□□ -1.98
Ddb1Q3U1J4 Gm6185-201ENSMUST00000193379 3553 ntBASIC2.68□□□□□ -1.98
Ddb1Q3U1J4 Zfp638-212ENSMUST00000203891 3968 ntAPPRIS ALT2 TSL 5 BASIC2.68□□□□□ -1.98
Ddb1Q3U1J4 Mir301b-201ENSMUST00000102333 97 ntBASIC2.68□□□□□ -1.98
Ddb1Q3U1J4 Gm26022-201ENSMUST00000158663 108 ntBASIC2.68□□□□□ -1.98
Ddb1Q3U1J4 Gm26004-201ENSMUST00000158804 116 ntBASIC2.68□□□□□ -1.98
Ddb1Q3U1J4 Mir466b-1-201ENSMUST00000177988 82 ntBASIC2.68□□□□□ -1.98
Ddb1Q3U1J4 Gm23966-201ENSMUST00000179823 107 ntBASIC2.68□□□□□ -1.98
Ddb1Q3U1J4 Gm27285-201ENSMUST00000183875 127 ntBASIC2.68□□□□□ -1.98
Ddb1Q3U1J4 Gm34276-201ENSMUST00000222558 439 ntTSL 5 BASIC2.68□□□□□ -1.98
Ddb1Q3U1J4 AC152979.2-201ENSMUST00000219702 3814 ntBASIC2.68□□□□□ -1.98
Ddb1Q3U1J4 Gm23060-201ENSMUST00000102345 109 ntBASIC2.67□□□□□ -1.98
Ddb1Q3U1J4 n-R5s158-201ENSMUST00000104095 118 ntBASIC2.67□□□□□ -1.98
Ddb1Q3U1J4 Gm25321-201ENSMUST00000122558 102 ntBASIC2.67□□□□□ -1.98
Ddb1Q3U1J4 Gm16328-201ENSMUST00000126985 196 ntBASIC2.67□□□□□ -1.98
Ddb1Q3U1J4 Gm25425-201ENSMUST00000157611 96 ntBASIC2.67□□□□□ -1.98
Ddb1Q3U1J4 Gm24015-201ENSMUST00000157725 232 ntBASIC2.67□□□□□ -1.98
Ddb1Q3U1J4 Gm24900-201ENSMUST00000158128 134 ntBASIC2.67□□□□□ -1.98
Ddb1Q3U1J4 Gm22767-201ENSMUST00000158365 165 ntBASIC2.67□□□□□ -1.98
Ddb1Q3U1J4 Gm26405-201ENSMUST00000158495 100 ntBASIC2.67□□□□□ -1.98
Ddb1Q3U1J4 Gm24769-201ENSMUST00000158506 129 ntBASIC2.67□□□□□ -1.98
Ddb1Q3U1J4 Mir6352-201ENSMUST00000184495 116 ntBASIC2.67□□□□□ -1.98
Ddb1Q3U1J4 Igkv2-93-1-201ENSMUST00000196774 272 ntBASIC2.67□□□□□ -1.98
Ddb1Q3U1J4 Gm42807-201ENSMUST00000200141 329 ntBASIC2.67□□□□□ -1.98
Ddb1Q3U1J4 n-R5s197-201ENSMUST00000083302 119 ntBASIC2.67□□□□□ -1.98
Ddb1Q3U1J4 Tlr8-201ENSMUST00000049023 3158 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
Ddb1Q3U1J4 Gm25599-201ENSMUST00000157816 103 ntBASIC2.66□□□□□ -1.98
Ddb1Q3U1J4 Mir1951-201ENSMUST00000157981 89 ntBASIC2.66□□□□□ -1.98
Ddb1Q3U1J4 Gm25223-201ENSMUST00000158200 110 ntBASIC2.66□□□□□ -1.98
Ddb1Q3U1J4 Gm24390-201ENSMUST00000179578 62 ntBASIC2.66□□□□□ -1.98
Ddb1Q3U1J4 Mir6376-201ENSMUST00000185149 131 ntBASIC2.66□□□□□ -1.98
Ddb1Q3U1J4 Gm40331-201ENSMUST00000198430 217 ntTSL 3 BASIC2.66□□□□□ -1.98
Ddb1Q3U1J4 AC132221.1-201ENSMUST00000220577 3841 ntBASIC2.66□□□□□ -1.98
Ddb1Q3U1J4 AC122242.1-201ENSMUST00000224650 304 ntBASIC2.66□□□□□ -1.98
Ddb1Q3U1J4 Mir29c-201ENSMUST00000083614 88 ntBASIC2.66□□□□□ -1.98
Ddb1Q3U1J4 Gm42862-201ENSMUST00000197494 2621 ntBASIC2.65□□□□□ -1.98
Ddb1Q3U1J4 Gm22935-201ENSMUST00000103960 104 ntBASIC2.65□□□□□ -1.99
Ddb1Q3U1J4 Gm10959-201ENSMUST00000106431 72 ntAPPRIS P1 TSL 5 BASIC2.65□□□□□ -1.99
Ddb1Q3U1J4 Gm13797-201ENSMUST00000121792 120 ntBASIC2.65□□□□□ -1.99
Ddb1Q3U1J4 Gm23599-201ENSMUST00000157261 251 ntBASIC2.65□□□□□ -1.99
Ddb1Q3U1J4 Gm24131-201ENSMUST00000158539 107 ntBASIC2.65□□□□□ -1.99
Ddb1Q3U1J4 Gm24277-201ENSMUST00000158661 104 ntBASIC2.65□□□□□ -1.99
Ddb1Q3U1J4 Gm20438-201ENSMUST00000174441 329 ntBASIC2.65□□□□□ -1.99
Ddb1Q3U1J4 Gm21903-201ENSMUST00000178039 90 ntAPPRIS P1 TSL 5 BASIC2.65□□□□□ -1.99
Ddb1Q3U1J4 Gm45522-201ENSMUST00000210784 166 ntBASIC2.65□□□□□ -1.99
Ddb1Q3U1J4 Gm45456-201ENSMUST00000210841 243 ntBASIC2.65□□□□□ -1.99
Ddb1Q3U1J4 Gm45791-201ENSMUST00000212908 352 ntBASIC2.65□□□□□ -1.99
Ddb1Q3U1J4 AC122465.2-201ENSMUST00000221774 354 ntBASIC2.65□□□□□ -1.99
Ddb1Q3U1J4 Mir302d-201ENSMUST00000083513 66 ntBASIC2.65□□□□□ -1.99
Ddb1Q3U1J4 Gm42635-201ENSMUST00000200266 2571 ntBASIC2.64□□□□□ -1.99
Ddb1Q3U1J4 Gm23101-201ENSMUST00000157550 137 ntBASIC2.64□□□□□ -1.99
Ddb1Q3U1J4 Gm23182-201ENSMUST00000158688 135 ntBASIC2.64□□□□□ -1.99
Ddb1Q3U1J4 Gm37997-201ENSMUST00000193515 267 ntBASIC2.64□□□□□ -1.99
Ddb1Q3U1J4 Gm34139-201ENSMUST00000196166 294 ntBASIC2.64□□□□□ -1.99
Ddb1Q3U1J4 Mucl1-202ENSMUST00000226484 758 ntAPPRIS P5 BASIC2.64□□□□□ -1.99
Ddb1Q3U1J4 Gm25081-201ENSMUST00000082534 108 ntBASIC2.64□□□□□ -1.99
Ddb1Q3U1J4 Snhg14-213ENSMUST00000190666 3708 ntTSL 1 (best) BASIC2.64□□□□□ -1.99
Ddb1Q3U1J4 Gm14748-201ENSMUST00000119819 411 ntBASIC2.63□□□□□ -1.99
Ddb1Q3U1J4 Gm17020-201ENSMUST00000172274 274 ntBASIC2.63□□□□□ -1.99
Ddb1Q3U1J4 Gm33866-201ENSMUST00000196911 289 ntBASIC2.63□□□□□ -1.99
Ddb1Q3U1J4 Gm18546-201ENSMUST00000197245 676 ntBASIC2.63□□□□□ -1.99
Ddb1Q3U1J4 Gm45386-201ENSMUST00000210194 218 ntBASIC2.63□□□□□ -1.99
Ddb1Q3U1J4 AC154515.1-201ENSMUST00000226085 2841 ntBASIC2.63□□□□□ -1.99
Ddb1Q3U1J4 Gm44133-202ENSMUST00000204450 2586 ntBASIC2.62□□□□□ -1.99
Ddb1Q3U1J4 Gm25832-201ENSMUST00000104140 130 ntBASIC2.62□□□□□ -1.99
Ddb1Q3U1J4 Gm25494-201ENSMUST00000158143 100 ntBASIC2.62□□□□□ -1.99
Ddb1Q3U1J4 Gm24510-201ENSMUST00000174965 94 ntBASIC2.62□□□□□ -1.99
Ddb1Q3U1J4 Vmn2r-ps20-201ENSMUST00000179853 382 ntBASIC2.62□□□□□ -1.99
Ddb1Q3U1J4 Mir7679-201ENSMUST00000183379 63 ntBASIC2.62□□□□□ -1.99
Ddb1Q3U1J4 Gm28344-201ENSMUST00000185704 279 ntBASIC2.62□□□□□ -1.99
Ddb1Q3U1J4 AL928567.1-201ENSMUST00000197891 138 ntBASIC2.62□□□□□ -1.99
Ddb1Q3U1J4 Gm25634-201ENSMUST00000082667 105 ntBASIC2.62□□□□□ -1.99
Ddb1Q3U1J4 Gm22683-201ENSMUST00000082854 137 ntBASIC2.62□□□□□ -1.99
Ddb1Q3U1J4 Olfr1228-203ENSMUST00000216392 2145 ntAPPRIS ALT2 TSL 5 BASIC2.62□□□□□ -1.99
Ddb1Q3U1J4 Gm24379-201ENSMUST00000122695 86 ntBASIC2.61□□□□□ -1.99
Ddb1Q3U1J4 Gm25961-201ENSMUST00000157174 135 ntBASIC2.61□□□□□ -1.99
Ddb1Q3U1J4 Gm27878-201ENSMUST00000184000 106 ntBASIC2.61□□□□□ -1.99
Ddb1Q3U1J4 Gm28076-201ENSMUST00000188337 410 ntTSL 3 BASIC2.61□□□□□ -1.99
Ddb1Q3U1J4 Gm43626-201ENSMUST00000198575 162 ntBASIC2.61□□□□□ -1.99
Ddb1Q3U1J4 Gm24661-201ENSMUST00000083205 104 ntBASIC2.61□□□□□ -1.99
Retrieved 100 of 76,532 protein–RNA pairs in 137.4 ms