Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Gm18546-201ENSMUST00000197245 676 ntBASIC2.14□□□□□ -2.07
ShhQ62226 Gm42807-201ENSMUST00000200141 329 ntBASIC2.14□□□□□ -2.07
ShhQ62226 AC127578.1-201ENSMUST00000227289 93 ntBASIC2.14□□□□□ -2.07
ShhQ62226 Gm10139-201ENSMUST00000081471 171 ntAPPRIS P1 BASIC2.14□□□□□ -2.07
ShhQ62226 Gm22421-201ENSMUST00000083058 107 ntBASIC2.14□□□□□ -2.07
ShhQ62226 Zfp980-202ENSMUST00000180014 1938 ntAPPRIS P1 TSL 2 BASIC2.14□□□□□ -2.07
ShhQ62226 AC153964.2-201ENSMUST00000217704 2474 ntBASIC2.14□□□□□ -2.07
ShhQ62226 Olfr1002-202ENSMUST00000215548 2295 ntAPPRIS P1 TSL 5 BASIC2.14□□□□□ -2.07
ShhQ62226 Gm6444-201ENSMUST00000119611 458 ntBASIC2.13□□□□□ -2.07
ShhQ62226 Gm13797-201ENSMUST00000121792 120 ntBASIC2.13□□□□□ -2.07
ShhQ62226 Gm37579-201ENSMUST00000194291 142 ntBASIC2.13□□□□□ -2.07
ShhQ62226 Gm38255-201ENSMUST00000194910 2996 ntBASIC2.13□□□□□ -2.07
ShhQ62226 Gm43722-201ENSMUST00000196054 124 ntBASIC2.13□□□□□ -2.07
ShhQ62226 AC165293.1-201ENSMUST00000219669 329 ntBASIC2.13□□□□□ -2.07
ShhQ62226 Mir384-201ENSMUST00000083565 88 ntBASIC2.13□□□□□ -2.07
ShhQ62226 Mir146-201ENSMUST00000083667 65 ntBASIC2.13□□□□□ -2.07
ShhQ62226 Gm7173-205ENSMUST00000197180 9412 ntAPPRIS ALT2 TSL 5 BASIC2.12□□□□□ -2.07
ShhQ62226 Snord72-201ENSMUST00000104549 81 ntBASIC2.12□□□□□ -2.07
ShhQ62226 Gm23584-201ENSMUST00000157655 129 ntBASIC2.12□□□□□ -2.07
ShhQ62226 Gm33866-201ENSMUST00000196911 289 ntBASIC2.12□□□□□ -2.07
ShhQ62226 Mir497-201ENSMUST00000200557 84 ntBASIC2.12□□□□□ -2.07
ShhQ62226 Gm6105-201ENSMUST00000200580 624 ntBASIC2.12□□□□□ -2.07
ShhQ62226 Gm45654-201ENSMUST00000210980 123 ntBASIC2.12□□□□□ -2.07
ShhQ62226 AC183096.2-201ENSMUST00000228733 457 ntBASIC2.12□□□□□ -2.07
ShhQ62226 Gm24453-201ENSMUST00000083346 76 ntBASIC2.12□□□□□ -2.07
ShhQ62226 Gm22151-201ENSMUST00000116963 58 ntBASIC2.11□□□□□ -2.07
ShhQ62226 Gm26150-201ENSMUST00000157426 151 ntBASIC2.11□□□□□ -2.07
ShhQ62226 Gm23101-201ENSMUST00000157550 137 ntBASIC2.11□□□□□ -2.07
ShhQ62226 Gm26482-201ENSMUST00000158015 62 ntBASIC2.11□□□□□ -2.07
ShhQ62226 Gm24277-201ENSMUST00000158661 104 ntBASIC2.11□□□□□ -2.07
ShhQ62226 Gm25836-201ENSMUST00000158918 123 ntBASIC2.11□□□□□ -2.07
ShhQ62226 Gm16162-201ENSMUST00000162296 297 ntBASIC2.11□□□□□ -2.07
ShhQ62226 Gm17677-201ENSMUST00000166746 351 ntAPPRIS P1 TSL 1 (best) BASIC2.11□□□□□ -2.07
ShhQ62226 Gm24813-201ENSMUST00000175310 84 ntBASIC2.11□□□□□ -2.07
ShhQ62226 Gm23571-201ENSMUST00000180073 127 ntBASIC2.11□□□□□ -2.07
ShhQ62226 Gm27878-201ENSMUST00000184000 106 ntBASIC2.11□□□□□ -2.07
ShhQ62226 Ighv1-1-201ENSMUST00000194912 291 ntBASIC2.11□□□□□ -2.07
ShhQ62226 Gm44491-201ENSMUST00000196794 96 ntBASIC2.11□□□□□ -2.07
ShhQ62226 Gm40331-201ENSMUST00000198430 217 ntTSL 3 BASIC2.11□□□□□ -2.07
ShhQ62226 AC122465.2-201ENSMUST00000221774 354 ntBASIC2.11□□□□□ -2.07
ShhQ62226 Gm6109-201ENSMUST00000223297 348 ntBASIC2.11□□□□□ -2.07
ShhQ62226 Gm25634-201ENSMUST00000082667 105 ntBASIC2.11□□□□□ -2.07
ShhQ62226 Mir471-201ENSMUST00000093596 67 ntBASIC2.11□□□□□ -2.07
ShhQ62226 CT009504.1-201ENSMUST00000218252 3330 ntBASIC2.11□□□□□ -2.07
ShhQ62226 Gm24049-201ENSMUST00000102409 100 ntBASIC2.1□□□□□ -2.07
ShhQ62226 Mir466p-201ENSMUST00000103925 89 ntBASIC2.1□□□□□ -2.07
ShhQ62226 Gm12449-201ENSMUST00000117572 234 ntBASIC2.1□□□□□ -2.07
ShhQ62226 Gm15861-201ENSMUST00000120979 339 ntBASIC2.1□□□□□ -2.07
ShhQ62226 Gm23983-201ENSMUST00000157142 114 ntBASIC2.1□□□□□ -2.07
ShhQ62226 Gm25910-201ENSMUST00000157620 140 ntBASIC2.1□□□□□ -2.07
ShhQ62226 Vmn2r-ps78-201ENSMUST00000173350 308 ntBASIC2.1□□□□□ -2.07
ShhQ62226 Gm22510-201ENSMUST00000179304 79 ntBASIC2.1□□□□□ -2.07
ShhQ62226 Gm26336-201ENSMUST00000179449 79 ntBASIC2.1□□□□□ -2.07
ShhQ62226 Gm26390-201ENSMUST00000179628 79 ntBASIC2.1□□□□□ -2.07
ShhQ62226 Gm45386-201ENSMUST00000210194 218 ntBASIC2.1□□□□□ -2.07
ShhQ62226 AC122242.1-201ENSMUST00000224650 304 ntBASIC2.1□□□□□ -2.07
ShhQ62226 Snord47-201ENSMUST00000083034 77 ntBASIC2.1□□□□□ -2.07
ShhQ62226 Gm10217-201ENSMUST00000088080 135 ntAPPRIS P1 TSL 5 BASIC2.1□□□□□ -2.07
ShhQ62226 Gm37331-201ENSMUST00000192367 3375 ntBASIC2.09□□□□□ -2.07
ShhQ62226 Thoc2-201ENSMUST00000047037 7622 ntAPPRIS P1 TSL 5 BASIC2.09□□□□□ -2.07
ShhQ62226 Gm24132-201ENSMUST00000104745 91 ntBASIC2.09□□□□□ -2.07
ShhQ62226 Gm23988-201ENSMUST00000117034 122 ntBASIC2.09□□□□□ -2.07
ShhQ62226 n-R5s164-201ENSMUST00000122664 112 ntBASIC2.09□□□□□ -2.07
ShhQ62226 Gm22731-201ENSMUST00000158086 94 ntBASIC2.09□□□□□ -2.07
ShhQ62226 Gm25494-201ENSMUST00000158143 100 ntBASIC2.09□□□□□ -2.07
ShhQ62226 Gm24769-201ENSMUST00000158506 129 ntBASIC2.09□□□□□ -2.07
ShhQ62226 Gm24837-201ENSMUST00000158683 81 ntBASIC2.09□□□□□ -2.07
ShhQ62226 Gm25491-201ENSMUST00000158733 308 ntBASIC2.09□□□□□ -2.07
ShhQ62226 Gm22911-201ENSMUST00000177920 107 ntBASIC2.09□□□□□ -2.07
ShhQ62226 Gm34139-201ENSMUST00000196166 294 ntBASIC2.09□□□□□ -2.07
ShhQ62226 AC125167.1-201ENSMUST00000198698 141 ntBASIC2.09□□□□□ -2.07
ShhQ62226 Mir3087-201ENSMUST00000199405 56 ntBASIC2.09□□□□□ -2.07
ShhQ62226 Gm35736-201ENSMUST00000203681 313 ntBASIC2.09□□□□□ -2.07
ShhQ62226 Snord82-201ENSMUST00000082889 70 ntBASIC2.09□□□□□ -2.07
ShhQ62226 Gm24762-201ENSMUST00000083689 104 ntBASIC2.09□□□□□ -2.07
ShhQ62226 Gm22723-201ENSMUST00000083820 129 ntBASIC2.09□□□□□ -2.07
ShhQ62226 Gm43540-201ENSMUST00000196320 3848 ntBASIC2.08□□□□□ -2.08
ShhQ62226 Olfr1208-202ENSMUST00000214121 2823 ntAPPRIS P1 TSL 3 BASIC2.08□□□□□ -2.08
ShhQ62226 Gm13801-201ENSMUST00000120750 160 ntBASIC2.08□□□□□ -2.08
ShhQ62226 Gm13913-201ENSMUST00000121126 260 ntBASIC2.08□□□□□ -2.08
ShhQ62226 n-R5s159-201ENSMUST00000122681 120 ntBASIC2.08□□□□□ -2.08
ShhQ62226 Gm22767-201ENSMUST00000158365 165 ntBASIC2.08□□□□□ -2.08
ShhQ62226 Gm26897-201ENSMUST00000180627 93 ntAPPRIS P1 TSL 5 BASIC2.08□□□□□ -2.08
ShhQ62226 Gm27465-201ENSMUST00000184290 91 ntBASIC2.08□□□□□ -2.08
ShhQ62226 Gm45116-201ENSMUST00000207392 275 ntBASIC2.08□□□□□ -2.08
ShhQ62226 Gm24313-201ENSMUST00000082561 133 ntBASIC2.08□□□□□ -2.08
ShhQ62226 Gm24536-201ENSMUST00000083144 107 ntBASIC2.08□□□□□ -2.08
ShhQ62226 Gm25628-201ENSMUST00000084002 105 ntBASIC2.08□□□□□ -2.08
ShhQ62226 Snora33-201ENSMUST00000093556 129 ntBASIC2.08□□□□□ -2.08
ShhQ62226 Snhg14-213ENSMUST00000190666 3708 ntTSL 1 (best) BASIC2.07□□□□□ -2.08
ShhQ62226 Gm26154-201ENSMUST00000102339 96 ntBASIC2.07□□□□□ -2.08
ShhQ62226 Gm24683-201ENSMUST00000104840 88 ntBASIC2.07□□□□□ -2.08
ShhQ62226 Gm14652-201ENSMUST00000118479 235 ntBASIC2.07□□□□□ -2.08
ShhQ62226 Gm14748-201ENSMUST00000119819 411 ntBASIC2.07□□□□□ -2.08
ShhQ62226 Gm14588-201ENSMUST00000119895 172 ntBASIC2.07□□□□□ -2.08
ShhQ62226 Gm26280-201ENSMUST00000157096 101 ntBASIC2.07□□□□□ -2.08
ShhQ62226 Gm25961-201ENSMUST00000157174 135 ntBASIC2.07□□□□□ -2.08
ShhQ62226 Gm22338-201ENSMUST00000157715 129 ntBASIC2.07□□□□□ -2.08
ShhQ62226 Gm25223-201ENSMUST00000158200 110 ntBASIC2.07□□□□□ -2.08
ShhQ62226 Gm25051-201ENSMUST00000158602 249 ntBASIC2.07□□□□□ -2.08
Retrieved 100 of 76,532 protein–RNA pairs in 76.2 ms