Protein–RNA interactions for Protein: Q4QRL3

Ccdc88b, Coiled-coil domain-containing protein 88B, mousemouse

Predictions only

Length 1,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88bQ4QRL3 Stfa2-201ENSMUST00000023619 423 ntAPPRIS P1 TSL 1 (best) BASIC-1.26□□□□□ -2.61
Ccdc88bQ4QRL3 Gm24459-201ENSMUST00000082730 86 ntBASIC-1.26□□□□□ -2.61
Ccdc88bQ4QRL3 Zfp967-201ENSMUST00000108997 417 ntTSL 3 BASIC-1.27□□□□□ -2.61
Ccdc88bQ4QRL3 Zfp969-201ENSMUST00000109027 417 ntTSL 3 BASIC-1.27□□□□□ -2.61
Ccdc88bQ4QRL3 Zfp965-203ENSMUST00000109043 417 ntTSL 5 BASIC-1.27□□□□□ -2.61
Ccdc88bQ4QRL3 Gm15563-201ENSMUST00000124953 410 ntTSL 3 BASIC-1.27□□□□□ -2.61
Ccdc88bQ4QRL3 Gm22038-201ENSMUST00000157277 242 ntBASIC-1.27□□□□□ -2.61
Ccdc88bQ4QRL3 Ranbp2-ps6-201ENSMUST00000183722 381 ntBASIC-1.27□□□□□ -2.61
Ccdc88bQ4QRL3 Gm28256-201ENSMUST00000188953 139 ntBASIC-1.27□□□□□ -2.61
Ccdc88bQ4QRL3 Gm28559-201ENSMUST00000190532 139 ntBASIC-1.27□□□□□ -2.61
Ccdc88bQ4QRL3 Gm37750-201ENSMUST00000193563 129 ntBASIC-1.27□□□□□ -2.61
Ccdc88bQ4QRL3 Gm37709-201ENSMUST00000195074 600 ntBASIC-1.27□□□□□ -2.61
Ccdc88bQ4QRL3 Gm23939-201ENSMUST00000082880 133 ntBASIC-1.27□□□□□ -2.61
Ccdc88bQ4QRL3 Mir18b-201ENSMUST00000103923 83 ntBASIC-1.28□□□□□ -2.61
Ccdc88bQ4QRL3 Gm17148-201ENSMUST00000164702 249 ntBASIC-1.28□□□□□ -2.61
Ccdc88bQ4QRL3 Gm34073-201ENSMUST00000195736 212 ntBASIC-1.28□□□□□ -2.61
Ccdc88bQ4QRL3 Gm11575-201ENSMUST00000122243 228 ntBASIC-1.29□□□□□ -2.62
Ccdc88bQ4QRL3 Gm2020-201ENSMUST00000145242 579 ntBASIC-1.29□□□□□ -2.62
Ccdc88bQ4QRL3 Gm23996-201ENSMUST00000158062 131 ntBASIC-1.29□□□□□ -2.62
Ccdc88bQ4QRL3 Gm22118-201ENSMUST00000175593 171 ntBASIC-1.29□□□□□ -2.62
Ccdc88bQ4QRL3 Gm44404-201ENSMUST00000203979 636 ntBASIC-1.29□□□□□ -2.62
Ccdc88bQ4QRL3 Gm26071-201ENSMUST00000083261 107 ntBASIC-1.29□□□□□ -2.62
Ccdc88bQ4QRL3 Gm22827-201ENSMUST00000083766 107 ntBASIC-1.29□□□□□ -2.62
Ccdc88bQ4QRL3 AC102369.2-201ENSMUST00000219725 1679 ntBASIC-1.29□□□□□ -2.62
Ccdc88bQ4QRL3 Gm24430-201ENSMUST00000104077 104 ntBASIC-1.3□□□□□ -2.62
Ccdc88bQ4QRL3 Gm15193-201ENSMUST00000120224 865 ntBASIC-1.3□□□□□ -2.62
Ccdc88bQ4QRL3 Gm23118-201ENSMUST00000122657 187 ntBASIC-1.3□□□□□ -2.62
Ccdc88bQ4QRL3 Gm23831-201ENSMUST00000158895 85 ntBASIC-1.3□□□□□ -2.62
Ccdc88bQ4QRL3 Gm20391-201ENSMUST00000174722 106 ntBASIC-1.3□□□□□ -2.62
Ccdc88bQ4QRL3 Gm24510-201ENSMUST00000174965 94 ntBASIC-1.3□□□□□ -2.62
Ccdc88bQ4QRL3 Gm26233-201ENSMUST00000175530 70 ntBASIC-1.3□□□□□ -2.62
Ccdc88bQ4QRL3 Gm23523-201ENSMUST00000180190 107 ntBASIC-1.3□□□□□ -2.62
Ccdc88bQ4QRL3 Gm24524-201ENSMUST00000082925 170 ntBASIC-1.3□□□□□ -2.62
Ccdc88bQ4QRL3 n-R5s153-201ENSMUST00000083451 116 ntBASIC-1.3□□□□□ -2.62
Ccdc88bQ4QRL3 Gm22496-201ENSMUST00000104493 88 ntBASIC-1.31□□□□□ -2.62
Ccdc88bQ4QRL3 Gm15010-201ENSMUST00000117153 407 ntBASIC-1.31□□□□□ -2.62
Ccdc88bQ4QRL3 Gm24648-201ENSMUST00000157111 132 ntBASIC-1.31□□□□□ -2.62
Ccdc88bQ4QRL3 Gm23589-201ENSMUST00000157660 105 ntBASIC-1.31□□□□□ -2.62
Ccdc88bQ4QRL3 Gm25882-201ENSMUST00000157784 85 ntBASIC-1.31□□□□□ -2.62
Ccdc88bQ4QRL3 Mir100-201ENSMUST00000175270 80 ntBASIC-1.31□□□□□ -2.62
Ccdc88bQ4QRL3 Gm25175-201ENSMUST00000178712 79 ntBASIC-1.31□□□□□ -2.62
Ccdc88bQ4QRL3 Scgb1b1-ps-201ENSMUST00000189264 268 ntBASIC-1.31□□□□□ -2.62
Ccdc88bQ4QRL3 Gm46136-201ENSMUST00000214730 565 ntBASIC-1.31□□□□□ -2.62
Ccdc88bQ4QRL3 AC157476.1-201ENSMUST00000215555 169 ntBASIC-1.31□□□□□ -2.62
Ccdc88bQ4QRL3 Gm22193-201ENSMUST00000116868 76 ntBASIC-1.31□□□□□ -2.62
Ccdc88bQ4QRL3 Gm12686-201ENSMUST00000120546 397 ntBASIC-1.31□□□□□ -2.62
Ccdc88bQ4QRL3 Gm24892-201ENSMUST00000122747 104 ntBASIC-1.31□□□□□ -2.62
Ccdc88bQ4QRL3 Gm22452-201ENSMUST00000122804 104 ntBASIC-1.31□□□□□ -2.62
Ccdc88bQ4QRL3 Gm22279-201ENSMUST00000157200 93 ntBASIC-1.31□□□□□ -2.62
Ccdc88bQ4QRL3 Gm23763-201ENSMUST00000158345 60 ntBASIC-1.31□□□□□ -2.62
Ccdc88bQ4QRL3 Cypt14-201ENSMUST00000179096 508 ntAPPRIS P1 TSL 1 (best) BASIC-1.31□□□□□ -2.62
Ccdc88bQ4QRL3 Gm43367-201ENSMUST00000199986 625 ntBASIC-1.31□□□□□ -2.62
Ccdc88bQ4QRL3 Gm44615-201ENSMUST00000206548 358 ntBASIC-1.31□□□□□ -2.62
Ccdc88bQ4QRL3 Gm23239-201ENSMUST00000083006 181 ntBASIC-1.31□□□□□ -2.62
Ccdc88bQ4QRL3 Gm22019-201ENSMUST00000104359 96 ntBASIC-1.32□□□□□ -2.62
Ccdc88bQ4QRL3 Gm15529-201ENSMUST00000121833 994 ntBASIC-1.32□□□□□ -2.62
Ccdc88bQ4QRL3 Gm27522-201ENSMUST00000183949 230 ntBASIC-1.32□□□□□ -2.62
Ccdc88bQ4QRL3 Gm44325-201ENSMUST00000196757 77 ntBASIC-1.32□□□□□ -2.62
Ccdc88bQ4QRL3 Gm22576-201ENSMUST00000083733 104 ntBASIC-1.32□□□□□ -2.62
Ccdc88bQ4QRL3 Gm23042-201ENSMUST00000083866 101 ntBASIC-1.32□□□□□ -2.62
Ccdc88bQ4QRL3 Gm45263-201ENSMUST00000210377 1375 ntBASIC-1.33□□□□□ -2.62
Ccdc88bQ4QRL3 Mir717-201ENSMUST00000102259 109 ntBASIC-1.33□□□□□ -2.62
Ccdc88bQ4QRL3 Gm11856-201ENSMUST00000118712 276 ntBASIC-1.33□□□□□ -2.62
Ccdc88bQ4QRL3 Gm25325-201ENSMUST00000122559 86 ntBASIC-1.33□□□□□ -2.62
Ccdc88bQ4QRL3 Dnal1-203ENSMUST00000136159 403 ntTSL 5 BASIC-1.33□□□□□ -2.62
Ccdc88bQ4QRL3 Gm23253-201ENSMUST00000157441 104 ntBASIC-1.33□□□□□ -2.62
Ccdc88bQ4QRL3 Mir7651-201ENSMUST00000184154 64 ntBASIC-1.33□□□□□ -2.62
Ccdc88bQ4QRL3 Mir325-201ENSMUST00000083491 98 ntBASIC-1.33□□□□□ -2.62
Ccdc88bQ4QRL3 Gm25627-201ENSMUST00000084003 153 ntBASIC-1.33□□□□□ -2.62
Ccdc88bQ4QRL3 Rgs13-202ENSMUST00000111941 1545 ntAPPRIS P1 TSL 1 (best) BASIC-1.34□□□□□ -2.62
Ccdc88bQ4QRL3 A530030E21Rik-201ENSMUST00000199551 1310 ntBASIC-1.34□□□□□ -2.62
Ccdc88bQ4QRL3 Gm24375-201ENSMUST00000104397 132 ntBASIC-1.34□□□□□ -2.62
Ccdc88bQ4QRL3 Gm25884-201ENSMUST00000157782 62 ntBASIC-1.34□□□□□ -2.62
Ccdc88bQ4QRL3 Gm9593-201ENSMUST00000166034 469 ntBASIC-1.34□□□□□ -2.62
Ccdc88bQ4QRL3 Gm37923-201ENSMUST00000191624 161 ntBASIC-1.34□□□□□ -2.62
Ccdc88bQ4QRL3 Gm38364-201ENSMUST00000191814 179 ntBASIC-1.34□□□□□ -2.62
Ccdc88bQ4QRL3 1700014F14Rik-201ENSMUST00000199566 197 ntTSL 1 (best) BASIC-1.34□□□□□ -2.62
Ccdc88bQ4QRL3 Gm5001-201ENSMUST00000204361 331 ntBASIC-1.34□□□□□ -2.62
Ccdc88bQ4QRL3 CT025689.4-201ENSMUST00000225926 601 ntBASIC-1.34□□□□□ -2.62
Ccdc88bQ4QRL3 AC151902.1-201ENSMUST00000227800 375 ntBASIC-1.34□□□□□ -2.62
Ccdc88bQ4QRL3 Gm15718-201ENSMUST00000131085 311 ntTSL 3 BASIC-1.35□□□□□ -2.63
Ccdc88bQ4QRL3 Gm24191-201ENSMUST00000157977 122 ntBASIC-1.35□□□□□ -2.63
Ccdc88bQ4QRL3 Gm24005-201ENSMUST00000158459 296 ntBASIC-1.35□□□□□ -2.63
Ccdc88bQ4QRL3 Gm26291-201ENSMUST00000158889 137 ntBASIC-1.35□□□□□ -2.63
Ccdc88bQ4QRL3 Gm23633-201ENSMUST00000175293 119 ntBASIC-1.35□□□□□ -2.63
Ccdc88bQ4QRL3 Mir490-201ENSMUST00000093567 84 ntBASIC-1.35□□□□□ -2.63
Ccdc88bQ4QRL3 Gm24276-201ENSMUST00000102181 110 ntBASIC-1.36□□□□□ -2.63
Ccdc88bQ4QRL3 Gm23072-201ENSMUST00000158243 123 ntBASIC-1.36□□□□□ -2.63
Ccdc88bQ4QRL3 4930555M17Rik-201ENSMUST00000176666 402 ntTSL 1 (best) BASIC-1.36□□□□□ -2.63
Ccdc88bQ4QRL3 Gm24308-201ENSMUST00000177773 114 ntBASIC-1.36□□□□□ -2.63
Ccdc88bQ4QRL3 Gm25944-201ENSMUST00000178758 94 ntBASIC-1.36□□□□□ -2.63
Ccdc88bQ4QRL3 Mir6355-201ENSMUST00000183687 106 ntBASIC-1.36□□□□□ -2.63
Ccdc88bQ4QRL3 Gm29591-201ENSMUST00000188215 357 ntTSL 5 BASIC-1.36□□□□□ -2.63
Ccdc88bQ4QRL3 Gm44324-201ENSMUST00000198517 135 ntBASIC-1.36□□□□□ -2.63
Ccdc88bQ4QRL3 AC154257.2-201ENSMUST00000224166 340 ntBASIC-1.36□□□□□ -2.63
Ccdc88bQ4QRL3 mt-Rnr1-201ENSMUST00000082388 955 ntBASIC-1.36□□□□□ -2.63
Ccdc88bQ4QRL3 Cpxcr1-201ENSMUST00000101269 1596 ntAPPRIS P1 TSL 1 (best) BASIC-1.36□□□□□ -2.63
Ccdc88bQ4QRL3 Gm22031-201ENSMUST00000116945 126 ntBASIC-1.37□□□□□ -2.63
Ccdc88bQ4QRL3 Gm11254-201ENSMUST00000122368 653 ntBASIC-1.37□□□□□ -2.63
Ccdc88bQ4QRL3 Gm13596-201ENSMUST00000153354 292 ntTSL 5 BASIC-1.37□□□□□ -2.63
Retrieved 100 of 76,532 protein–RNA pairs in 233.7 ms