Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 Olfr267-202ENSMUST00000216719 4050 ntAPPRIS P1 TSL 5 BASIC3.65□□□□□ -1.82
Rnf40Q3U319 Nlrp9a-202ENSMUST00000108387 3336 ntAPPRIS P4 TSL 1 (best) BASIC3.65□□□□□ -1.82
Rnf40Q3U319 Zfp40-206ENSMUST00000172177 2736 ntAPPRIS P1 TSL 5 BASIC3.65□□□□□ -1.82
Rnf40Q3U319 Acer3-202ENSMUST00000120520 3964 ntTSL 1 (best) BASIC3.65□□□□□ -1.82
Rnf40Q3U319 Olfr17-202ENSMUST00000210568 3666 ntAPPRIS P1 TSL 5 BASIC3.65□□□□□ -1.82
Rnf40Q3U319 Mir291a-201ENSMUST00000104815 82 ntBASIC3.65□□□□□ -1.83
Rnf40Q3U319 Gm25680-201ENSMUST00000116917 126 ntBASIC3.65□□□□□ -1.83
Rnf40Q3U319 Mir1187-201ENSMUST00000116936 122 ntBASIC3.65□□□□□ -1.83
Rnf40Q3U319 Gm22635-201ENSMUST00000116962 126 ntBASIC3.65□□□□□ -1.83
Rnf40Q3U319 Gm14937-201ENSMUST00000119709 208 ntBASIC3.65□□□□□ -1.83
Rnf40Q3U319 Rab11fip4os2-202ENSMUST00000132921 355 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
Rnf40Q3U319 Gm25558-201ENSMUST00000158083 106 ntBASIC3.65□□□□□ -1.83
Rnf40Q3U319 Gm22853-201ENSMUST00000174974 131 ntBASIC3.65□□□□□ -1.83
Rnf40Q3U319 Mir5619-201ENSMUST00000176065 61 ntBASIC3.65□□□□□ -1.83
Rnf40Q3U319 Mir5710-201ENSMUST00000176884 69 ntBASIC3.65□□□□□ -1.83
Rnf40Q3U319 Gm28030-201ENSMUST00000184987 138 ntBASIC3.65□□□□□ -1.83
Rnf40Q3U319 Gm18346-201ENSMUST00000216782 325 ntBASIC3.65□□□□□ -1.83
Rnf40Q3U319 Macf1-206ENSMUST00000106224 23402 ntAPPRIS ALT2 TSL 5 BASIC3.65□□□□□ -1.83
Rnf40Q3U319 CT025538.3-201ENSMUST00000225279 3848 ntBASIC3.64□□□□□ -1.83
Rnf40Q3U319 Gm25764-201ENSMUST00000104092 134 ntBASIC3.64□□□□□ -1.83
Rnf40Q3U319 Mir669d-201ENSMUST00000104644 121 ntBASIC3.64□□□□□ -1.83
Rnf40Q3U319 Gm11192-201ENSMUST00000127017 151 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
Rnf40Q3U319 Gm25965-201ENSMUST00000157170 93 ntBASIC3.64□□□□□ -1.83
Rnf40Q3U319 Gm24244-201ENSMUST00000157317 130 ntBASIC3.64□□□□□ -1.83
Rnf40Q3U319 Gm22706-201ENSMUST00000157907 112 ntBASIC3.64□□□□□ -1.83
Rnf40Q3U319 Mpc1-ps-201ENSMUST00000181662 330 ntBASIC3.64□□□□□ -1.83
Rnf40Q3U319 Mir7081-201ENSMUST00000184490 75 ntBASIC3.64□□□□□ -1.83
Rnf40Q3U319 AC157572.3-201ENSMUST00000227288 303 ntBASIC3.64□□□□□ -1.83
Rnf40Q3U319 Gm26109-201ENSMUST00000083970 70 ntBASIC3.64□□□□□ -1.83
Rnf40Q3U319 Zfp987-201ENSMUST00000091878 2798 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
Rnf40Q3U319 Olfr1039-202ENSMUST00000214364 3925 ntAPPRIS P1 TSL 5 BASIC3.63□□□□□ -1.83
Rnf40Q3U319 Gm24598-201ENSMUST00000122510 74 ntBASIC3.63□□□□□ -1.83
Rnf40Q3U319 Gm23554-201ENSMUST00000157818 110 ntBASIC3.63□□□□□ -1.83
Rnf40Q3U319 Mir1950-201ENSMUST00000158526 74 ntBASIC3.63□□□□□ -1.83
Rnf40Q3U319 AC140930.2-201ENSMUST00000221803 109 ntBASIC3.63□□□□□ -1.83
Rnf40Q3U319 Ifi209-201ENSMUST00000056071 3439 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
Rnf40Q3U319 Olfr346-202ENSMUST00000213258 4104 ntAPPRIS P1 TSL 5 BASIC3.63□□□□□ -1.83
Rnf40Q3U319 Olfr397-204ENSMUST00000216291 4168 ntAPPRIS P1 TSL 5 BASIC3.62□□□□□ -1.83
Rnf40Q3U319 Gm44150-201ENSMUST00000203317 2619 ntBASIC3.62□□□□□ -1.83
Rnf40Q3U319 Hif1a-202ENSMUST00000110461 4385 ntAPPRIS ALT2 TSL 1 (best) BASIC3.62□□□□□ -1.83
Rnf40Q3U319 Zfp990-202ENSMUST00000105742 2996 ntAPPRIS P1 TSL 2 BASIC3.62□□□□□ -1.83
Rnf40Q3U319 Gm22672-201ENSMUST00000104414 134 ntBASIC3.62□□□□□ -1.83
Rnf40Q3U319 Gm14671-201ENSMUST00000121790 262 ntBASIC3.62□□□□□ -1.83
Rnf40Q3U319 n-R5s191-201ENSMUST00000122724 116 ntBASIC3.62□□□□□ -1.83
Rnf40Q3U319 Gm4479-201ENSMUST00000178807 171 ntBASIC3.62□□□□□ -1.83
Rnf40Q3U319 Olfr1007-ps1-201ENSMUST00000217468 138 ntBASIC3.62□□□□□ -1.83
Rnf40Q3U319 Spata45-201ENSMUST00000077889 432 ntAPPRIS P1 TSL 2 BASIC3.62□□□□□ -1.83
Rnf40Q3U319 Olfr1033-202ENSMUST00000213865 3664 ntAPPRIS P1 TSL 5 BASIC3.62□□□□□ -1.83
Rnf40Q3U319 Olfr124-203ENSMUST00000216478 4416 ntAPPRIS P1 TSL 5 BASIC3.62□□□□□ -1.83
Rnf40Q3U319 Gm45844-205ENSMUST00000210333 3861 ntAPPRIS P5 TSL 1 (best) BASIC3.62□□□□□ -1.83
Rnf40Q3U319 Csnka2ip-202ENSMUST00000209382 2859 ntAPPRIS ALT2 TSL 5 BASIC3.61□□□□□ -1.83
Rnf40Q3U319 Olfr1154-202ENSMUST00000215017 2917 ntAPPRIS P1 TSL 5 BASIC3.61□□□□□ -1.83
Rnf40Q3U319 Olfr109-203ENSMUST00000214938 5550 ntAPPRIS P1 TSL 5 BASIC3.61□□□□□ -1.83
Rnf40Q3U319 Gm14917-201ENSMUST00000118872 2105 ntBASIC3.61□□□□□ -1.83
Rnf40Q3U319 Gm22115-201ENSMUST00000103976 133 ntBASIC3.61□□□□□ -1.83
Rnf40Q3U319 Gm26077-201ENSMUST00000104064 123 ntBASIC3.61□□□□□ -1.83
Rnf40Q3U319 Gm23923-201ENSMUST00000104108 133 ntBASIC3.61□□□□□ -1.83
Rnf40Q3U319 Gm24632-201ENSMUST00000122770 323 ntBASIC3.61□□□□□ -1.83
Rnf40Q3U319 Gm22279-201ENSMUST00000157200 93 ntBASIC3.61□□□□□ -1.83
Rnf40Q3U319 Gm25999-201ENSMUST00000175398 133 ntBASIC3.61□□□□□ -1.83
Rnf40Q3U319 Gm24801-201ENSMUST00000178503 105 ntBASIC3.61□□□□□ -1.83
Rnf40Q3U319 Mir323-201ENSMUST00000083683 86 ntBASIC3.61□□□□□ -1.83
Rnf40Q3U319 Gm25628-201ENSMUST00000084002 105 ntBASIC3.61□□□□□ -1.83
Rnf40Q3U319 Gm25627-201ENSMUST00000084003 153 ntBASIC3.61□□□□□ -1.83
Rnf40Q3U319 Olfr104-ps-202ENSMUST00000215398 2771 ntAPPRIS P5 TSL 5 BASIC3.61□□□□□ -1.83
Rnf40Q3U319 Olfr679-204ENSMUST00000215704 5018 ntAPPRIS P1 TSL 5 BASIC3.61□□□□□ -1.83
Rnf40Q3U319 Gm42445-201ENSMUST00000196996 2893 ntBASIC3.61□□□□□ -1.83
Rnf40Q3U319 Zfp991-201ENSMUST00000084149 2813 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
Rnf40Q3U319 Zfp945-205ENSMUST00000160457 6497 ntAPPRIS P4 TSL 1 (best) BASIC3.6□□□□□ -1.83
Rnf40Q3U319 Gm23468-201ENSMUST00000157125 108 ntBASIC3.6□□□□□ -1.83
Rnf40Q3U319 Traj61-201ENSMUST00000165025 72 ntBASIC3.6□□□□□ -1.83
Rnf40Q3U319 Gm25449-201ENSMUST00000179389 79 ntBASIC3.6□□□□□ -1.83
Rnf40Q3U319 Gm9370-201ENSMUST00000222787 609 ntBASIC3.6□□□□□ -1.83
Rnf40Q3U319 Gm26165-201ENSMUST00000083791 138 ntBASIC3.6□□□□□ -1.83
Rnf40Q3U319 Gm26573-201ENSMUST00000181199 3020 ntTSL 5 BASIC3.6□□□□□ -1.83
Rnf40Q3U319 Olfr229-202ENSMUST00000214904 3125 ntAPPRIS P1 TSL 5 BASIC3.6□□□□□ -1.83
Rnf40Q3U319 Vmn2r81-201ENSMUST00000020547 3276 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
Rnf40Q3U319 Samd9l-201ENSMUST00000120087 5330 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
Rnf40Q3U319 Gabra2-203ENSMUST00000197284 5852 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
Rnf40Q3U319 Olfr1231-202ENSMUST00000216144 3961 ntAPPRIS P1 TSL 3 BASIC3.6□□□□□ -1.83
Rnf40Q3U319 Olfr1033-205ENSMUST00000218397 3973 ntAPPRIS P1 TSL 5 BASIC3.6□□□□□ -1.83
Rnf40Q3U319 Adam5-201ENSMUST00000050300 2560 ntAPPRIS ALT2 TSL 1 (best) BASIC3.59□□□□□ -1.83
Rnf40Q3U319 8030445P17Rik-201ENSMUST00000192614 2741 ntBASIC3.59□□□□□ -1.83
Rnf40Q3U319 Scai-201ENSMUST00000038874 10709 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
Rnf40Q3U319 Mir693-201ENSMUST00000102187 89 ntBASIC3.59□□□□□ -1.83
Rnf40Q3U319 Gm12025-201ENSMUST00000117768 144 ntBASIC3.59□□□□□ -1.83
Rnf40Q3U319 Gm23716-201ENSMUST00000157348 144 ntBASIC3.59□□□□□ -1.83
Rnf40Q3U319 Gm26150-201ENSMUST00000157426 151 ntBASIC3.59□□□□□ -1.83
Rnf40Q3U319 Igkv11-118-201ENSMUST00000199448 346 ntBASIC3.59□□□□□ -1.83
Rnf40Q3U319 Igkv8-31-201ENSMUST00000200040 372 ntBASIC3.59□□□□□ -1.83
Rnf40Q3U319 Gm25592-201ENSMUST00000082635 131 ntBASIC3.59□□□□□ -1.83
Rnf40Q3U319 Cngb3-201ENSMUST00000102999 4708 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.84
Rnf40Q3U319 Gm44715-201ENSMUST00000209049 3839 ntBASIC3.58□□□□□ -1.84
Rnf40Q3U319 Gm44527-201ENSMUST00000182210 2945 ntTSL 2 BASIC3.58□□□□□ -1.84
Rnf40Q3U319 Zfp735-201ENSMUST00000080407 3746 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
Rnf40Q3U319 Gm25485-201ENSMUST00000104120 132 ntBASIC3.58□□□□□ -1.84
Rnf40Q3U319 Rhox11-ps3-201ENSMUST00000121166 233 ntBASIC3.58□□□□□ -1.84
Rnf40Q3U319 Gm13686-201ENSMUST00000122851 350 ntTSL 3 BASIC3.58□□□□□ -1.84
Rnf40Q3U319 Gm25436-201ENSMUST00000158275 145 ntBASIC3.58□□□□□ -1.84
Rnf40Q3U319 Gm20399-201ENSMUST00000174652 132 ntBASIC3.58□□□□□ -1.84
Retrieved 100 of 76,532 protein–RNA pairs in 91.2 ms