| Hoxd12 | P23812 | Obox4-ps37-201 | ENSMUST00000177223 | 276 nt | BASIC | 2.09 | □□□□□ -2.07 | | |
| Hoxd12 | P23812 | Gm7958-201 | ENSMUST00000178255 | 468 nt | BASIC | 2.09 | □□□□□ -2.07 | | |
| Hoxd12 | P23812 | Gm7950-201 | ENSMUST00000179633 | 468 nt | BASIC | 2.09 | □□□□□ -2.07 | | |
| Hoxd12 | P23812 | Gm27271-201 | ENSMUST00000183509 | 170 nt | BASIC | 2.09 | □□□□□ -2.07 | | |
| Hoxd12 | P23812 | Mir6481-201 | ENSMUST00000184617 | 110 nt | BASIC | 2.09 | □□□□□ -2.07 | | |
| Hoxd12 | P23812 | Gm29604-201 | ENSMUST00000187176 | 163 nt | BASIC | 2.09 | □□□□□ -2.07 | | |
| Hoxd12 | P23812 | Gm29262-201 | ENSMUST00000190084 | 196 nt | BASIC | 2.09 | □□□□□ -2.07 | | |
| Hoxd12 | P23812 | Mir465d-201 | ENSMUST00000196314 | 58 nt | BASIC | 2.09 | □□□□□ -2.07 | | |
| Hoxd12 | P23812 | Gm36546-201 | ENSMUST00000206372 | 230 nt | TSL 5 BASIC | 2.09 | □□□□□ -2.07 | | |
| Hoxd12 | P23812 | AC122834.1-201 | ENSMUST00000227182 | 425 nt | BASIC | 2.09 | □□□□□ -2.07 | | |
| Hoxd12 | P23812 | AC183096.2-201 | ENSMUST00000228733 | 457 nt | BASIC | 2.09 | □□□□□ -2.07 | | |
| Hoxd12 | P23812 | Gm24457-201 | ENSMUST00000083196 | 105 nt | BASIC | 2.09 | □□□□□ -2.07 | | |
| Hoxd12 | P23812 | Gm22169-201 | ENSMUST00000083229 | 107 nt | BASIC | 2.09 | □□□□□ -2.07 | | |
| Hoxd12 | P23812 | Mir181b-2-201 | ENSMUST00000083644 | 89 nt | BASIC | 2.09 | □□□□□ -2.07 | | |
| Hoxd12 | P23812 | Skint5-202 | ENSMUST00000169631 | 4497 nt | APPRIS P5 TSL 1 (best) BASIC | 2.09 | □□□□□ -2.08 | | |
| Hoxd12 | P23812 | Agmo-201 | ENSMUST00000049874 | 2423 nt | APPRIS P1 TSL 1 (best) BASIC | 2.08 | □□□□□ -2.08 | | |
| Hoxd12 | P23812 | Olfr136-205 | ENSMUST00000216963 | 1821 nt | APPRIS P1 TSL 5 BASIC | 2.08 | □□□□□ -2.08 | | |
| Hoxd12 | P23812 | Traj37-201 | ENSMUST00000103705 | 60 nt | APPRIS P1 BASIC | 2.08 | □□□□□ -2.08 | | |
| Hoxd12 | P23812 | Mir466h-201 | ENSMUST00000104748 | 81 nt | BASIC | 2.08 | □□□□□ -2.08 | | |
| Hoxd12 | P23812 | Gm22145-201 | ENSMUST00000157396 | 148 nt | BASIC | 2.08 | □□□□□ -2.08 | | |
| Hoxd12 | P23812 | Gm23181-201 | ENSMUST00000158685 | 110 nt | BASIC | 2.08 | □□□□□ -2.08 | | |
| Hoxd12 | P23812 | Olfr454-ps1-201 | ENSMUST00000205206 | 348 nt | BASIC | 2.08 | □□□□□ -2.08 | | |
| Hoxd12 | P23812 | Gm45508-201 | ENSMUST00000209298 | 299 nt | BASIC | 2.08 | □□□□□ -2.08 | | |
| Hoxd12 | P23812 | Gm3333-201 | ENSMUST00000221637 | 452 nt | TSL 5 BASIC | 2.08 | □□□□□ -2.08 | | |
| Hoxd12 | P23812 | Gm24151-201 | ENSMUST00000082758 | 141 nt | BASIC | 2.08 | □□□□□ -2.08 | | |
| Hoxd12 | P23812 | Olfr1228-203 | ENSMUST00000216392 | 2145 nt | APPRIS ALT2 TSL 5 BASIC | 2.08 | □□□□□ -2.08 | | |
| Hoxd12 | P23812 | Gm12080-201 | ENSMUST00000119821 | 1883 nt | BASIC | 2.07 | □□□□□ -2.08 | | |
| Hoxd12 | P23812 | Gm23469-201 | ENSMUST00000157131 | 104 nt | BASIC | 2.07 | □□□□□ -2.08 | | |
| Hoxd12 | P23812 | Gm25720-201 | ENSMUST00000157503 | 105 nt | BASIC | 2.07 | □□□□□ -2.08 | | |
| Hoxd12 | P23812 | Gm25460-201 | ENSMUST00000157954 | 127 nt | BASIC | 2.07 | □□□□□ -2.08 | | |
| Hoxd12 | P23812 | Gm2962-201 | ENSMUST00000159266 | 336 nt | BASIC | 2.07 | □□□□□ -2.08 | | |
| Hoxd12 | P23812 | Gm24638-201 | ENSMUST00000179807 | 132 nt | BASIC | 2.07 | □□□□□ -2.08 | | |
| Hoxd12 | P23812 | Gm29167-201 | ENSMUST00000190024 | 377 nt | BASIC | 2.07 | □□□□□ -2.08 | | |
| Hoxd12 | P23812 | Gm29022-201 | ENSMUST00000190702 | 225 nt | BASIC | 2.07 | □□□□□ -2.08 | | |
| Hoxd12 | P23812 | Gm19123-201 | ENSMUST00000190716 | 651 nt | BASIC | 2.07 | □□□□□ -2.08 | | |
| Hoxd12 | P23812 | Olfr797-ps1-201 | ENSMUST00000203614 | 415 nt | BASIC | 2.07 | □□□□□ -2.08 | | |
| Hoxd12 | P23812 | Selenok-ps5-201 | ENSMUST00000221048 | 278 nt | BASIC | 2.07 | □□□□□ -2.08 | | |
| Hoxd12 | P23812 | Gm24204-201 | ENSMUST00000082950 | 107 nt | BASIC | 2.07 | □□□□□ -2.08 | | |
| Hoxd12 | P23812 | Mir30d-201 | ENSMUST00000083503 | 82 nt | BASIC | 2.07 | □□□□□ -2.08 | | |
| Hoxd12 | P23812 | Gm23039-201 | ENSMUST00000083870 | 161 nt | BASIC | 2.07 | □□□□□ -2.08 | | |
| Hoxd12 | P23812 | Gm14838-201 | ENSMUST00000118913 | 248 nt | BASIC | 2.06 | □□□□□ -2.08 | | |
| Hoxd12 | P23812 | Gm15162-201 | ENSMUST00000119325 | 283 nt | BASIC | 2.06 | □□□□□ -2.08 | | |
| Hoxd12 | P23812 | Gm12721-201 | ENSMUST00000120621 | 268 nt | BASIC | 2.06 | □□□□□ -2.08 | | |
| Hoxd12 | P23812 | Gm25390-201 | ENSMUST00000157341 | 103 nt | BASIC | 2.06 | □□□□□ -2.08 | | |
| Hoxd12 | P23812 | Gm16162-201 | ENSMUST00000162296 | 297 nt | BASIC | 2.06 | □□□□□ -2.08 | | |
| Hoxd12 | P23812 | Gm17067-202 | ENSMUST00000180131 | 123 nt | BASIC | 2.06 | □□□□□ -2.08 | | |
| Hoxd12 | P23812 | Gm26864-201 | ENSMUST00000181346 | 156 nt | BASIC | 2.06 | □□□□□ -2.08 | | |
| Hoxd12 | P23812 | C920009B18Rik-204 | ENSMUST00000181733 | 123 nt | BASIC | 2.06 | □□□□□ -2.08 | | |
| Hoxd12 | P23812 | Gm26265-202 | ENSMUST00000196326 | 133 nt | BASIC | 2.06 | □□□□□ -2.08 | | |
| Hoxd12 | P23812 | Gm20005-201 | ENSMUST00000202583 | 299 nt | TSL 1 (best) BASIC | 2.06 | □□□□□ -2.08 | | |
| Hoxd12 | P23812 | 4930598N05Rik-207 | ENSMUST00000208997 | 83 nt | TSL 5 BASIC | 2.06 | □□□□□ -2.08 | | |
| Hoxd12 | P23812 | Gm26495-201 | ENSMUST00000083152 | 137 nt | BASIC | 2.06 | □□□□□ -2.08 | | |
| Hoxd12 | P23812 | Gm24661-201 | ENSMUST00000083205 | 104 nt | BASIC | 2.06 | □□□□□ -2.08 | | |
| Hoxd12 | P23812 | Olfr948-202 | ENSMUST00000216132 | 4164 nt | APPRIS P1 TSL 5 BASIC | 2.06 | □□□□□ -2.08 | | |
| Hoxd12 | P23812 | Gpr174-202 | ENSMUST00000117310 | 3536 nt | APPRIS P1 TSL 1 (best) BASIC | 2.05 | □□□□□ -2.08 | | |
| Hoxd12 | P23812 | Olfr1253-203 | ENSMUST00000215185 | 4984 nt | APPRIS P1 TSL 5 BASIC | 2.05 | □□□□□ -2.08 | | |
| Hoxd12 | P23812 | Gm23015-201 | ENSMUST00000104145 | 128 nt | BASIC | 2.05 | □□□□□ -2.08 | | |
| Hoxd12 | P23812 | Gm22494-201 | ENSMUST00000104495 | 128 nt | BASIC | 2.05 | □□□□□ -2.08 | | |
| Hoxd12 | P23812 | n-R5s187-201 | ENSMUST00000122769 | 111 nt | BASIC | 2.05 | □□□□□ -2.08 | | |
| Hoxd12 | P23812 | Gm22883-201 | ENSMUST00000157376 | 106 nt | BASIC | 2.05 | □□□□□ -2.08 | | |
| Hoxd12 | P23812 | Gm28020-201 | ENSMUST00000157739 | 67 nt | BASIC | 2.05 | □□□□□ -2.08 | | |
| Hoxd12 | P23812 | Gm24006-201 | ENSMUST00000158462 | 132 nt | BASIC | 2.05 | □□□□□ -2.08 | | |
| Hoxd12 | P23812 | Gm25654-201 | ENSMUST00000158467 | 88 nt | BASIC | 2.05 | □□□□□ -2.08 | | |
| Hoxd12 | P23812 | Gm25615-201 | ENSMUST00000177836 | 94 nt | BASIC | 2.05 | □□□□□ -2.08 | | |
| Hoxd12 | P23812 | Gm23002-201 | ENSMUST00000179221 | 107 nt | BASIC | 2.05 | □□□□□ -2.08 | | |
| Hoxd12 | P23812 | Mir7016-201 | ENSMUST00000184308 | 72 nt | BASIC | 2.05 | □□□□□ -2.08 | | |
| Hoxd12 | P23812 | Gm10092-201 | ENSMUST00000077110 | 180 nt | BASIC | 2.05 | □□□□□ -2.08 | | |
| Hoxd12 | P23812 | Gm24355-201 | ENSMUST00000082858 | 122 nt | BASIC | 2.05 | □□□□□ -2.08 | | |
| Hoxd12 | P23812 | Gm24163-201 | ENSMUST00000093660 | 132 nt | BASIC | 2.05 | □□□□□ -2.08 | | |
| Hoxd12 | P23812 | Olfr1044-202 | ENSMUST00000215171 | 3266 nt | APPRIS P1 TSL 5 BASIC | 2.05 | □□□□□ -2.08 | | |
| Hoxd12 | P23812 | AC124456.1-201 | ENSMUST00000217391 | 2597 nt | BASIC | 2.04 | □□□□□ -2.08 | | |
| Hoxd12 | P23812 | Vmn1r185-210 | ENSMUST00000228367 | 6982 nt | APPRIS P1 BASIC | 2.04 | □□□□□ -2.08 | | |
| Hoxd12 | P23812 | Mir301b-201 | ENSMUST00000102333 | 97 nt | BASIC | 2.04 | □□□□□ -2.08 | | |
| Hoxd12 | P23812 | Gm16510-201 | ENSMUST00000153501 | 249 nt | BASIC | 2.04 | □□□□□ -2.08 | | |
| Hoxd12 | P23812 | Gm23219-201 | ENSMUST00000158123 | 87 nt | BASIC | 2.04 | □□□□□ -2.08 | | |
| Hoxd12 | P23812 | Snord87-201 | ENSMUST00000175437 | 87 nt | BASIC | 2.04 | □□□□□ -2.08 | | |
| Hoxd12 | P23812 | Gm27803-201 | ENSMUST00000183763 | 119 nt | BASIC | 2.04 | □□□□□ -2.08 | | |
| Hoxd12 | P23812 | Mir8116-201 | ENSMUST00000184134 | 97 nt | BASIC | 2.04 | □□□□□ -2.08 | | |
| Hoxd12 | P23812 | Mir6352-201 | ENSMUST00000184495 | 116 nt | BASIC | 2.04 | □□□□□ -2.08 | | |
| Hoxd12 | P23812 | Gm27421-201 | ENSMUST00000184729 | 167 nt | BASIC | 2.04 | □□□□□ -2.08 | | |
| Hoxd12 | P23812 | Gm38064-201 | ENSMUST00000194032 | 444 nt | TSL 3 BASIC | 2.04 | □□□□□ -2.08 | | |
| Hoxd12 | P23812 | Mir7021-201 | ENSMUST00000197026 | 63 nt | BASIC | 2.04 | □□□□□ -2.08 | | |
| Hoxd12 | P23812 | Igkv13-76-201 | ENSMUST00000197621 | 347 nt | BASIC | 2.04 | □□□□□ -2.08 | | |
| Hoxd12 | P23812 | Gm43706-201 | ENSMUST00000198767 | 2652 nt | BASIC | 2.04 | □□□□□ -2.08 | | |
| Hoxd12 | P23812 | Gm20144-201 | ENSMUST00000203031 | 165 nt | BASIC | 2.04 | □□□□□ -2.08 | | |
| Hoxd12 | P23812 | Gm24313-201 | ENSMUST00000082561 | 133 nt | BASIC | 2.04 | □□□□□ -2.08 | | |
| Hoxd12 | P23812 | Gm24615-201 | ENSMUST00000083268 | 113 nt | BASIC | 2.04 | □□□□□ -2.08 | | |
| Hoxd12 | P23812 | Olfr307-202 | ENSMUST00000213705 | 4498 nt | APPRIS P1 TSL 5 BASIC | 2.04 | □□□□□ -2.08 | | |
| Hoxd12 | P23812 | Gpr174-207 | ENSMUST00000178838 | 4955 nt | APPRIS P1 TSL 2 BASIC | 2.03 | □□□□□ -2.08 | | |
| Hoxd12 | P23812 | Gm23013-201 | ENSMUST00000104146 | 106 nt | BASIC | 2.03 | □□□□□ -2.08 | | |
| Hoxd12 | P23812 | Gm24867-201 | ENSMUST00000104161 | 107 nt | BASIC | 2.03 | □□□□□ -2.08 | | |
| Hoxd12 | P23812 | Snord72-201 | ENSMUST00000104549 | 81 nt | BASIC | 2.03 | □□□□□ -2.08 | | |
| Hoxd12 | P23812 | Gm26280-201 | ENSMUST00000157096 | 101 nt | BASIC | 2.03 | □□□□□ -2.08 | | |
| Hoxd12 | P23812 | Gm27511-201 | ENSMUST00000183502 | 127 nt | BASIC | 2.03 | □□□□□ -2.08 | | |
| Hoxd12 | P23812 | Olfr375-ps1-201 | ENSMUST00000198131 | 249 nt | BASIC | 2.03 | □□□□□ -2.08 | | |
| Hoxd12 | P23812 | Gm45456-201 | ENSMUST00000210841 | 243 nt | BASIC | 2.03 | □□□□□ -2.08 | | |
| Hoxd12 | P23812 | AC144671.1-201 | ENSMUST00000215265 | 99 nt | BASIC | 2.03 | □□□□□ -2.08 | | |
| Hoxd12 | P23812 | Gm24966-201 | ENSMUST00000082443 | 79 nt | BASIC | 2.03 | □□□□□ -2.08 | | |
| Hoxd12 | P23812 | Zfp273-201 | ENSMUST00000012725 | 2277 nt | TSL 1 (best) BASIC | 2.03 | □□□□□ -2.08 | | |
| Hoxd12 | P23812 | Gm24121-201 | ENSMUST00000102029 | 106 nt | BASIC | 2.02 | □□□□□ -2.09 | | |