| Hoxa3 | P02831 | Gm22664-201 | ENSMUST00000158719 | 105 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| Hoxa3 | P02831 | Gm18346-201 | ENSMUST00000216782 | 325 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| Hoxa3 | P02831 | Olfr1208-202 | ENSMUST00000214121 | 2823 nt | APPRIS P1 TSL 3 BASIC | 2.11 | □□□□□ -2.07 | | |
| Hoxa3 | P02831 | Gm26293-201 | ENSMUST00000104170 | 84 nt | BASIC | 2.11 | □□□□□ -2.07 | | |
| Hoxa3 | P02831 | Gm2830-201 | ENSMUST00000140330 | 385 nt | BASIC | 2.11 | □□□□□ -2.07 | | |
| Hoxa3 | P02831 | Gm22606-201 | ENSMUST00000158290 | 103 nt | BASIC | 2.11 | □□□□□ -2.07 | | |
| Hoxa3 | P02831 | Gm25707-201 | ENSMUST00000175120 | 96 nt | BASIC | 2.11 | □□□□□ -2.07 | | |
| Hoxa3 | P02831 | Gm16404-201 | ENSMUST00000177739 | 468 nt | BASIC | 2.11 | □□□□□ -2.07 | | |
| Hoxa3 | P02831 | Gm14598-201 | ENSMUST00000180109 | 468 nt | BASIC | 2.11 | □□□□□ -2.07 | | |
| Hoxa3 | P02831 | Gm14625-201 | ENSMUST00000180231 | 468 nt | BASIC | 2.11 | □□□□□ -2.07 | | |
| Hoxa3 | P02831 | Gm28912-201 | ENSMUST00000189001 | 234 nt | BASIC | 2.11 | □□□□□ -2.07 | | |
| Hoxa3 | P02831 | Gm45652-201 | ENSMUST00000210926 | 3831 nt | BASIC | 2.11 | □□□□□ -2.07 | | |
| Hoxa3 | P02831 | AC101945.1-201 | ENSMUST00000226734 | 466 nt | BASIC | 2.11 | □□□□□ -2.07 | | |
| Hoxa3 | P02831 | Gm22622-201 | ENSMUST00000082870 | 129 nt | BASIC | 2.11 | □□□□□ -2.07 | | |
| Hoxa3 | P02831 | AC159625.1-201 | ENSMUST00000220994 | 2625 nt | BASIC | 2.11 | □□□□□ -2.07 | | |
| Hoxa3 | P02831 | Gm24049-201 | ENSMUST00000102409 | 100 nt | BASIC | 2.1 | □□□□□ -2.07 | | |
| Hoxa3 | P02831 | Gm25529-201 | ENSMUST00000104850 | 92 nt | BASIC | 2.1 | □□□□□ -2.07 | | |
| Hoxa3 | P02831 | Gm22151-201 | ENSMUST00000116963 | 58 nt | BASIC | 2.1 | □□□□□ -2.07 | | |
| Hoxa3 | P02831 | Gm26150-201 | ENSMUST00000157426 | 151 nt | BASIC | 2.1 | □□□□□ -2.07 | | |
| Hoxa3 | P02831 | Gm25371-201 | ENSMUST00000158162 | 101 nt | BASIC | 2.1 | □□□□□ -2.07 | | |
| Hoxa3 | P02831 | Gm24075-201 | ENSMUST00000158175 | 72 nt | BASIC | 2.1 | □□□□□ -2.07 | | |
| Hoxa3 | P02831 | Gm22476-201 | ENSMUST00000158902 | 100 nt | BASIC | 2.1 | □□□□□ -2.07 | | |
| Hoxa3 | P02831 | Gm22510-201 | ENSMUST00000179304 | 79 nt | BASIC | 2.1 | □□□□□ -2.07 | | |
| Hoxa3 | P02831 | Gm26336-201 | ENSMUST00000179449 | 79 nt | BASIC | 2.1 | □□□□□ -2.07 | | |
| Hoxa3 | P02831 | Gm26390-201 | ENSMUST00000179628 | 79 nt | BASIC | 2.1 | □□□□□ -2.07 | | |
| Hoxa3 | P02831 | Gm26897-201 | ENSMUST00000180627 | 93 nt | APPRIS P1 TSL 5 BASIC | 2.1 | □□□□□ -2.07 | | |
| Hoxa3 | P02831 | Mir8090-201 | ENSMUST00000185078 | 136 nt | BASIC | 2.1 | □□□□□ -2.07 | | |
| Hoxa3 | P02831 | Gm44491-201 | ENSMUST00000196794 | 96 nt | BASIC | 2.1 | □□□□□ -2.07 | | |
| Hoxa3 | P02831 | Gm43749-201 | ENSMUST00000199345 | 352 nt | BASIC | 2.1 | □□□□□ -2.07 | | |
| Hoxa3 | P02831 | Gm44938-201 | ENSMUST00000208614 | 427 nt | BASIC | 2.1 | □□□□□ -2.07 | | |
| Hoxa3 | P02831 | Olfr1153-202 | ENSMUST00000217436 | 2144 nt | APPRIS P1 TSL 5 BASIC | 2.1 | □□□□□ -2.07 | | |
| Hoxa3 | P02831 | AC132221.1-201 | ENSMUST00000220577 | 3841 nt | BASIC | 2.1 | □□□□□ -2.07 | | |
| Hoxa3 | P02831 | AC124456.1-201 | ENSMUST00000217391 | 2597 nt | BASIC | 2.1 | □□□□□ -2.07 | | |
| Hoxa3 | P02831 | Gm42635-201 | ENSMUST00000200266 | 2571 nt | BASIC | 2.09 | □□□□□ -2.07 | | |
| Hoxa3 | P02831 | Mir92-1-201 | ENSMUST00000102108 | 80 nt | BASIC | 2.09 | □□□□□ -2.07 | | |
| Hoxa3 | P02831 | Gm25485-201 | ENSMUST00000104120 | 132 nt | BASIC | 2.09 | □□□□□ -2.07 | | |
| Hoxa3 | P02831 | Gm23653-201 | ENSMUST00000116751 | 97 nt | BASIC | 2.09 | □□□□□ -2.07 | | |
| Hoxa3 | P02831 | Gm26157-201 | ENSMUST00000158974 | 126 nt | BASIC | 2.09 | □□□□□ -2.07 | | |
| Hoxa3 | P02831 | Gm17364-201 | ENSMUST00000163881 | 72 nt | APPRIS P1 TSL 5 BASIC | 2.09 | □□□□□ -2.07 | | |
| Hoxa3 | P02831 | Gm25464-201 | ENSMUST00000175481 | 107 nt | BASIC | 2.09 | □□□□□ -2.07 | | |
| Hoxa3 | P02831 | Gm42960-201 | ENSMUST00000202160 | 241 nt | BASIC | 2.09 | □□□□□ -2.07 | | |
| Hoxa3 | P02831 | Gm44052-201 | ENSMUST00000203382 | 396 nt | BASIC | 2.09 | □□□□□ -2.07 | | |
| Hoxa3 | P02831 | Gm6109-201 | ENSMUST00000223297 | 348 nt | BASIC | 2.09 | □□□□□ -2.07 | | |
| Hoxa3 | P02831 | CT025579.1-201 | ENSMUST00000223779 | 366 nt | BASIC | 2.09 | □□□□□ -2.07 | | |
| Hoxa3 | P02831 | AC154328.1-201 | ENSMUST00000225875 | 307 nt | BASIC | 2.09 | □□□□□ -2.07 | | |
| Hoxa3 | P02831 | AC127578.1-201 | ENSMUST00000227289 | 93 nt | BASIC | 2.09 | □□□□□ -2.07 | | |
| Hoxa3 | P02831 | Gm24929-201 | ENSMUST00000083403 | 139 nt | BASIC | 2.09 | □□□□□ -2.07 | | |
| Hoxa3 | P02831 | Gm36669-201 | ENSMUST00000201757 | 3650 nt | TSL 1 (best) BASIC | 2.09 | □□□□□ -2.08 | | |
| Hoxa3 | P02831 | AC123052.1-201 | ENSMUST00000220604 | 4616 nt | BASIC | 2.08 | □□□□□ -2.08 | | |
| Hoxa3 | P02831 | Zfp788-207 | ENSMUST00000170770 | 2499 nt | TSL 1 (best) BASIC | 2.08 | □□□□□ -2.08 | | |
| Hoxa3 | P02831 | Zfy2-201 | ENSMUST00000115891 | 2816 nt | APPRIS P1 TSL 1 (best) BASIC | 2.08 | □□□□□ -2.08 | | |
| Hoxa3 | P02831 | Gm26411-201 | ENSMUST00000157668 | 107 nt | BASIC | 2.08 | □□□□□ -2.08 | | |
| Hoxa3 | P02831 | Gm22338-201 | ENSMUST00000157715 | 129 nt | BASIC | 2.08 | □□□□□ -2.08 | | |
| Hoxa3 | P02831 | Gm23665-201 | ENSMUST00000158054 | 62 nt | BASIC | 2.08 | □□□□□ -2.08 | | |
| Hoxa3 | P02831 | Gm23223-201 | ENSMUST00000158119 | 127 nt | BASIC | 2.08 | □□□□□ -2.08 | | |
| Hoxa3 | P02831 | Gm24837-201 | ENSMUST00000158683 | 81 nt | BASIC | 2.08 | □□□□□ -2.08 | | |
| Hoxa3 | P02831 | Gm21064-202 | ENSMUST00000190583 | 278 nt | BASIC | 2.08 | □□□□□ -2.08 | | |
| Hoxa3 | P02831 | Gm37027-201 | ENSMUST00000194642 | 256 nt | TSL 1 (best) BASIC | 2.08 | □□□□□ -2.08 | | |
| Hoxa3 | P02831 | Gm44922-201 | ENSMUST00000206690 | 90 nt | BASIC | 2.08 | □□□□□ -2.08 | | |
| Hoxa3 | P02831 | Gm5010-201 | ENSMUST00000213131 | 260 nt | BASIC | 2.08 | □□□□□ -2.08 | | |
| Hoxa3 | P02831 | Gm3333-201 | ENSMUST00000221637 | 452 nt | TSL 5 BASIC | 2.08 | □□□□□ -2.08 | | |
| Hoxa3 | P02831 | Gm18795-201 | ENSMUST00000222371 | 3266 nt | TSL 5 BASIC | 2.08 | □□□□□ -2.08 | | |
| Hoxa3 | P02831 | Gm26624-201 | ENSMUST00000181486 | 3769 nt | TSL 5 BASIC | 2.07 | □□□□□ -2.08 | | |
| Hoxa3 | P02831 | Olfr229-202 | ENSMUST00000214904 | 3125 nt | APPRIS P1 TSL 5 BASIC | 2.07 | □□□□□ -2.08 | | |
| Hoxa3 | P02831 | Pak3-210 | ENSMUST00000172330 | 8135 nt | APPRIS P3 TSL 1 (best) BASIC | 2.07 | □□□□□ -2.08 | | |
| Hoxa3 | P02831 | Gm45178-201 | ENSMUST00000207744 | 4110 nt | BASIC | 2.07 | □□□□□ -2.08 | | |
| Hoxa3 | P02831 | Gm22752-201 | ENSMUST00000102083 | 109 nt | BASIC | 2.07 | □□□□□ -2.08 | | |
| Hoxa3 | P02831 | Gm25825-201 | ENSMUST00000157091 | 124 nt | BASIC | 2.07 | □□□□□ -2.08 | | |
| Hoxa3 | P02831 | Gm26097-201 | ENSMUST00000179642 | 93 nt | BASIC | 2.07 | □□□□□ -2.08 | | |
| Hoxa3 | P02831 | Gm9156-201 | ENSMUST00000189660 | 463 nt | BASIC | 2.07 | □□□□□ -2.08 | | |
| Hoxa3 | P02831 | Gm18213-201 | ENSMUST00000207850 | 178 nt | BASIC | 2.07 | □□□□□ -2.08 | | |
| Hoxa3 | P02831 | Gm25081-201 | ENSMUST00000082534 | 108 nt | BASIC | 2.07 | □□□□□ -2.08 | | |
| Hoxa3 | P02831 | Mir155-201 | ENSMUST00000083463 | 65 nt | BASIC | 2.07 | □□□□□ -2.08 | | |
| Hoxa3 | P02831 | Vmn2r70-201 | ENSMUST00000168230 | 2565 nt | APPRIS P1 TSL 5 BASIC | 2.07 | □□□□□ -2.08 | | |
| Hoxa3 | P02831 | AC160984.1-201 | ENSMUST00000225855 | 3154 nt | BASIC | 2.06 | □□□□□ -2.08 | | |
| Hoxa3 | P02831 | Olfr777-202 | ENSMUST00000204573 | 5407 nt | APPRIS P1 TSL 5 BASIC | 2.06 | □□□□□ -2.08 | | |
| Hoxa3 | P02831 | Gm21940-201 | ENSMUST00000204940 | 2278 nt | BASIC | 2.06 | □□□□□ -2.08 | | |
| Hoxa3 | P02831 | Gm24280-201 | ENSMUST00000104237 | 134 nt | BASIC | 2.06 | □□□□□ -2.08 | | |
| Hoxa3 | P02831 | Gm22148-201 | ENSMUST00000104445 | 107 nt | BASIC | 2.06 | □□□□□ -2.08 | | |
| Hoxa3 | P02831 | Gm14536-201 | ENSMUST00000118324 | 138 nt | BASIC | 2.06 | □□□□□ -2.08 | | |
| Hoxa3 | P02831 | Gm6952-201 | ENSMUST00000118629 | 159 nt | BASIC | 2.06 | □□□□□ -2.08 | | |
| Hoxa3 | P02831 | Gm15027-201 | ENSMUST00000120922 | 138 nt | BASIC | 2.06 | □□□□□ -2.08 | | |
| Hoxa3 | P02831 | Gm25945-201 | ENSMUST00000122484 | 135 nt | BASIC | 2.06 | □□□□□ -2.08 | | |
| Hoxa3 | P02831 | Gm3848-201 | ENSMUST00000136693 | 299 nt | TSL 1 (best) BASIC | 2.06 | □□□□□ -2.08 | | |
| Hoxa3 | P02831 | Gm23980-201 | ENSMUST00000157135 | 158 nt | BASIC | 2.06 | □□□□□ -2.08 | | |
| Hoxa3 | P02831 | Gm25716-201 | ENSMUST00000158628 | 104 nt | BASIC | 2.06 | □□□□□ -2.08 | | |
| Hoxa3 | P02831 | Gm3211-201 | ENSMUST00000172721 | 304 nt | TSL 3 BASIC | 2.06 | □□□□□ -2.08 | | |
| Hoxa3 | P02831 | Mir5118-201 | ENSMUST00000175551 | 67 nt | BASIC | 2.06 | □□□□□ -2.08 | | |
| Hoxa3 | P02831 | Gm44555-201 | ENSMUST00000209008 | 148 nt | BASIC | 2.06 | □□□□□ -2.08 | | |
| Hoxa3 | P02831 | Gm40604-202 | ENSMUST00000219541 | 522 nt | TSL 5 BASIC | 2.06 | □□□□□ -2.08 | | |
| Hoxa3 | P02831 | AC154282.1-201 | ENSMUST00000223154 | 265 nt | BASIC | 2.06 | □□□□□ -2.08 | | |
| Hoxa3 | P02831 | AC158982.2-201 | ENSMUST00000226283 | 184 nt | BASIC | 2.06 | □□□□□ -2.08 | | |
| Hoxa3 | P02831 | AC165138.1-201 | ENSMUST00000226984 | 270 nt | BASIC | 2.06 | □□□□□ -2.08 | | |
| Hoxa3 | P02831 | Snord118-201 | ENSMUST00000082965 | 135 nt | BASIC | 2.06 | □□□□□ -2.08 | | |
| Hoxa3 | P02831 | Gm24536-201 | ENSMUST00000083144 | 107 nt | BASIC | 2.06 | □□□□□ -2.08 | | |
| Hoxa3 | P02831 | Olfr974-202 | ENSMUST00000213246 | 3561 nt | APPRIS P1 TSL 2 BASIC | 2.06 | □□□□□ -2.08 | | |
| Hoxa3 | P02831 | Gm45461-201 | ENSMUST00000211726 | 4535 nt | BASIC | 2.05 | □□□□□ -2.08 | | |
| Hoxa3 | P02831 | Gm44680-201 | ENSMUST00000208414 | 2910 nt | BASIC | 2.05 | □□□□□ -2.08 | | |
| Hoxa3 | P02831 | Tlr8-202 | ENSMUST00000112170 | 3431 nt | APPRIS P1 TSL 2 BASIC | 2.05 | □□□□□ -2.08 | | |
| Hoxa3 | P02831 | Gm26342-201 | ENSMUST00000104557 | 129 nt | BASIC | 2.05 | □□□□□ -2.08 | | |