Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Gm25834-201ENSMUST00000158916 101 ntBASIC2.21□□□□□ -2.06
ShhQ62226 Mir28b-201ENSMUST00000175399 80 ntBASIC2.21□□□□□ -2.06
ShhQ62226 Gm27991-201ENSMUST00000184804 137 ntBASIC2.21□□□□□ -2.06
ShhQ62226 7330423F06Rik-201ENSMUST00000197499 301 ntBASIC2.21□□□□□ -2.06
ShhQ62226 Gm43626-201ENSMUST00000198575 162 ntBASIC2.21□□□□□ -2.06
ShhQ62226 Mir7215-201ENSMUST00000200383 51 ntBASIC2.21□□□□□ -2.06
ShhQ62226 Olfr1478-ps1-201ENSMUST00000208393 391 ntBASIC2.21□□□□□ -2.06
ShhQ62226 AC164086.1-201ENSMUST00000221038 289 ntBASIC2.21□□□□□ -2.06
ShhQ62226 AC173482.5-201ENSMUST00000224181 327 ntBASIC2.21□□□□□ -2.06
ShhQ62226 Gm26175-201ENSMUST00000083794 131 ntBASIC2.21□□□□□ -2.06
ShhQ62226 Gm42635-201ENSMUST00000200266 2571 ntBASIC2.21□□□□□ -2.06
ShhQ62226 Gm44133-202ENSMUST00000204450 2586 ntBASIC2.21□□□□□ -2.06
ShhQ62226 AC125374.3-201ENSMUST00000214983 2810 ntBASIC2.21□□□□□ -2.06
ShhQ62226 Gm45178-201ENSMUST00000207744 4110 ntBASIC2.21□□□□□ -2.06
ShhQ62226 Gm43706-201ENSMUST00000198767 2652 ntBASIC2.21□□□□□ -2.06
ShhQ62226 Olfr166-203ENSMUST00000216465 4371 ntAPPRIS P1 TSL 5 BASIC2.21□□□□□ -2.06
ShhQ62226 Gm25938-201ENSMUST00000104139 166 ntBASIC2.2□□□□□ -2.06
ShhQ62226 Gm23015-201ENSMUST00000104145 128 ntBASIC2.2□□□□□ -2.06
ShhQ62226 Gm23010-201ENSMUST00000104151 126 ntBASIC2.2□□□□□ -2.06
ShhQ62226 Gm12941-201ENSMUST00000117934 220 ntBASIC2.2□□□□□ -2.06
ShhQ62226 Gm24598-201ENSMUST00000122510 74 ntBASIC2.2□□□□□ -2.06
ShhQ62226 Gm26279-201ENSMUST00000157095 102 ntBASIC2.2□□□□□ -2.06
ShhQ62226 Gm23980-201ENSMUST00000157135 158 ntBASIC2.2□□□□□ -2.06
ShhQ62226 Gm21738-201ENSMUST00000177817 681 ntAPPRIS P1 TSL 5 BASIC2.2□□□□□ -2.06
ShhQ62226 Vmn2r-ps17-201ENSMUST00000178733 375 ntBASIC2.2□□□□□ -2.06
ShhQ62226 Gm27585-201ENSMUST00000183717 199 ntBASIC2.2□□□□□ -2.06
ShhQ62226 Igkv13-76-201ENSMUST00000197621 347 ntBASIC2.2□□□□□ -2.06
ShhQ62226 Trav14-1-201ENSMUST00000198297 399 ntAPPRIS P1 BASIC2.2□□□□□ -2.06
ShhQ62226 Igkv14-118-1-201ENSMUST00000198645 334 ntBASIC2.2□□□□□ -2.06
ShhQ62226 Gm44564-201ENSMUST00000207985 180 ntBASIC2.2□□□□□ -2.06
ShhQ62226 Gm8031-201ENSMUST00000213430 626 ntBASIC2.2□□□□□ -2.06
ShhQ62226 Gm24615-201ENSMUST00000083268 113 ntBASIC2.2□□□□□ -2.06
ShhQ62226 Mir423-201ENSMUST00000083584 109 ntBASIC2.2□□□□□ -2.06
ShhQ62226 AC132221.1-201ENSMUST00000220577 3841 ntBASIC2.2□□□□□ -2.06
ShhQ62226 Gm45558-201ENSMUST00000209384 1895 ntBASIC2.2□□□□□ -2.06
ShhQ62226 Gm37895-201ENSMUST00000192448 4550 ntBASIC2.19□□□□□ -2.06
ShhQ62226 Tcrg-V4-201ENSMUST00000103554 426 ntAPPRIS P1 BASIC2.19□□□□□ -2.06
ShhQ62226 Rps15a-ps6-201ENSMUST00000117476 393 ntBASIC2.19□□□□□ -2.06
ShhQ62226 Gm12325-201ENSMUST00000135553 320 ntTSL 5 BASIC2.19□□□□□ -2.06
ShhQ62226 Gm22221-201ENSMUST00000157362 103 ntBASIC2.19□□□□□ -2.06
ShhQ62226 Gm23223-201ENSMUST00000158119 127 ntBASIC2.19□□□□□ -2.06
ShhQ62226 Olfr1366-201ENSMUST00000168629 1054 ntAPPRIS ALT2 BASIC2.19□□□□□ -2.06
ShhQ62226 Eif4e-206ENSMUST00000200239 526 ntTSL 5 BASIC2.19□□□□□ -2.06
ShhQ62226 AC122428.1-201ENSMUST00000213709 217 ntTSL 3 BASIC2.19□□□□□ -2.06
ShhQ62226 Olfr1366-204ENSMUST00000218154 1054 ntAPPRIS P2 BASIC2.19□□□□□ -2.06
ShhQ62226 Gm34276-201ENSMUST00000222558 439 ntTSL 5 BASIC2.19□□□□□ -2.06
ShhQ62226 Gm10360-201ENSMUST00000097219 272 ntBASIC2.19□□□□□ -2.06
ShhQ62226 Olfr851-202ENSMUST00000214130 7123 ntAPPRIS P1 TSL 5 BASIC2.19□□□□□ -2.06
ShhQ62226 Gm13212-202ENSMUST00000105739 3595 ntAPPRIS P1 TSL 5 BASIC2.19□□□□□ -2.06
ShhQ62226 Olfr1437-202ENSMUST00000207241 3751 ntAPPRIS P1 TSL 2 BASIC2.19□□□□□ -2.06
ShhQ62226 Olfr681-203ENSMUST00000215517 4324 ntAPPRIS P1 TSL 5 BASIC2.18□□□□□ -2.06
ShhQ62226 Gm24212-201ENSMUST00000158258 132 ntBASIC2.18□□□□□ -2.06
ShhQ62226 Gm26022-201ENSMUST00000158663 108 ntBASIC2.18□□□□□ -2.06
ShhQ62226 Gm26435-201ENSMUST00000179026 107 ntBASIC2.18□□□□□ -2.06
ShhQ62226 Mir7225-201ENSMUST00000184178 54 ntBASIC2.18□□□□□ -2.06
ShhQ62226 Gm37146-201ENSMUST00000192572 463 ntTSL 3 BASIC2.18□□□□□ -2.06
ShhQ62226 Igkv2-93-1-201ENSMUST00000196774 272 ntBASIC2.18□□□□□ -2.06
ShhQ62226 AC154213.2-201ENSMUST00000227138 187 ntBASIC2.18□□□□□ -2.06
ShhQ62226 Gm22248-201ENSMUST00000082482 150 ntBASIC2.18□□□□□ -2.06
ShhQ62226 Gm23461-201ENSMUST00000083265 107 ntBASIC2.18□□□□□ -2.06
ShhQ62226 Mir222-201ENSMUST00000083537 79 ntBASIC2.18□□□□□ -2.06
ShhQ62226 Gm43046-201ENSMUST00000198771 2451 ntBASIC2.18□□□□□ -2.06
ShhQ62226 Gm43484-201ENSMUST00000198333 5966 ntBASIC2.18□□□□□ -2.06
ShhQ62226 Catsperb-201ENSMUST00000055156 3716 ntAPPRIS P1 TSL 1 (best) BASIC2.17□□□□□ -2.06
ShhQ62226 Olfr790-202ENSMUST00000203966 2602 ntAPPRIS P1 TSL 5 BASIC2.17□□□□□ -2.06
ShhQ62226 Gm25094-201ENSMUST00000103992 131 ntBASIC2.17□□□□□ -2.06
ShhQ62226 Gm25424-201ENSMUST00000157612 58 ntBASIC2.17□□□□□ -2.06
ShhQ62226 Gm22535-201ENSMUST00000158174 119 ntBASIC2.17□□□□□ -2.06
ShhQ62226 Hmga1b-202ENSMUST00000178955 120 ntBASIC2.17□□□□□ -2.06
ShhQ62226 Gm27898-201ENSMUST00000183987 80 ntBASIC2.17□□□□□ -2.06
ShhQ62226 Mir6376-201ENSMUST00000185149 131 ntBASIC2.17□□□□□ -2.06
ShhQ62226 Gm45002-201ENSMUST00000208045 120 ntBASIC2.17□□□□□ -2.06
ShhQ62226 Mir29c-201ENSMUST00000083614 88 ntBASIC2.17□□□□□ -2.06
ShhQ62226 Ifi203-205ENSMUST00000129829 3054 ntAPPRIS ALT2 TSL 1 (best) BASIC2.17□□□□□ -2.06
ShhQ62226 Olfr1039-203ENSMUST00000216566 4166 ntAPPRIS P1 TSL 5 BASIC2.17□□□□□ -2.06
ShhQ62226 Olfr974-202ENSMUST00000213246 3561 ntAPPRIS P1 TSL 2 BASIC2.16□□□□□ -2.06
ShhQ62226 Igkv6-13-201ENSMUST00000103395 287 ntAPPRIS P1 BASIC2.16□□□□□ -2.06
ShhQ62226 Gm2830-201ENSMUST00000140330 385 ntBASIC2.16□□□□□ -2.06
ShhQ62226 Gm10722-201ENSMUST00000151376 651 ntAPPRIS P1 TSL 5 BASIC2.16□□□□□ -2.06
ShhQ62226 Gm23182-201ENSMUST00000158688 135 ntBASIC2.16□□□□□ -2.06
ShhQ62226 Gm24510-201ENSMUST00000174965 94 ntBASIC2.16□□□□□ -2.06
ShhQ62226 Gm24390-201ENSMUST00000179578 62 ntBASIC2.16□□□□□ -2.06
ShhQ62226 Gm43587-201ENSMUST00000199590 204 ntBASIC2.16□□□□□ -2.06
ShhQ62226 CU062626.2-201ENSMUST00000223953 274 ntBASIC2.16□□□□□ -2.06
ShhQ62226 Gm44680-201ENSMUST00000208414 2910 ntBASIC2.16□□□□□ -2.06
ShhQ62226 Gm42862-201ENSMUST00000197494 2621 ntBASIC2.15□□□□□ -2.06
ShhQ62226 n-R5s158-201ENSMUST00000104095 118 ntBASIC2.15□□□□□ -2.07
ShhQ62226 Gm22149-201ENSMUST00000104442 136 ntBASIC2.15□□□□□ -2.07
ShhQ62226 Gm12068-201ENSMUST00000153153 376 ntTSL 3 BASIC2.15□□□□□ -2.07
ShhQ62226 Mir1951-201ENSMUST00000157981 89 ntBASIC2.15□□□□□ -2.07
ShhQ62226 Gm26405-201ENSMUST00000158495 100 ntBASIC2.15□□□□□ -2.07
ShhQ62226 Gm21903-201ENSMUST00000178039 90 ntAPPRIS P1 TSL 5 BASIC2.15□□□□□ -2.07
ShhQ62226 Gm25935-201ENSMUST00000178746 107 ntBASIC2.15□□□□□ -2.07
ShhQ62226 Gm45456-201ENSMUST00000210841 243 ntBASIC2.15□□□□□ -2.07
ShhQ62226 Gm25204-201ENSMUST00000082843 106 ntBASIC2.15□□□□□ -2.07
ShhQ62226 Olfr1228-203ENSMUST00000216392 2145 ntAPPRIS ALT2 TSL 5 BASIC2.15□□□□□ -2.07
ShhQ62226 Olfr1225-203ENSMUST00000217054 5517 ntAPPRIS P1 TSL 5 BASIC2.14□□□□□ -2.07
ShhQ62226 Gm22935-201ENSMUST00000103960 104 ntBASIC2.14□□□□□ -2.07
ShhQ62226 Gm20438-201ENSMUST00000174441 329 ntBASIC2.14□□□□□ -2.07
ShhQ62226 Gm28169-201ENSMUST00000190342 345 ntBASIC2.14□□□□□ -2.07
Retrieved 100 of 76,532 protein–RNA pairs in 82.2 ms