Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Gm24053-201ENSMUST00000158620 105 ntBASIC2.27□□□□□ -2.05
ShhQ62226 Gm24177-201ENSMUST00000158927 131 ntBASIC2.27□□□□□ -2.05
ShhQ62226 Gm23548-201ENSMUST00000158963 106 ntBASIC2.27□□□□□ -2.05
ShhQ62226 Snord50b-201ENSMUST00000178497 72 ntBASIC2.27□□□□□ -2.05
ShhQ62226 Gm42834-201ENSMUST00000196845 256 ntBASIC2.27□□□□□ -2.05
ShhQ62226 Gm43512-201ENSMUST00000198495 176 ntBASIC2.27□□□□□ -2.05
ShhQ62226 Gm44182-201ENSMUST00000204052 115 ntBASIC2.27□□□□□ -2.05
ShhQ62226 Gm44903-201ENSMUST00000206840 130 ntBASIC2.27□□□□□ -2.05
ShhQ62226 Gm44563-201ENSMUST00000207958 178 ntBASIC2.27□□□□□ -2.05
ShhQ62226 AC132615.1-201ENSMUST00000213873 255 ntBASIC2.27□□□□□ -2.05
ShhQ62226 Selenok-ps5-201ENSMUST00000221048 278 ntBASIC2.27□□□□□ -2.05
ShhQ62226 C230088H06Rik-202ENSMUST00000181752 3010 ntTSL 5 BASIC2.27□□□□□ -2.05
ShhQ62226 Olfr1161-203ENSMUST00000217006 3647 ntAPPRIS P1 TSL 5 BASIC2.27□□□□□ -2.05
ShhQ62226 Olfr576-201ENSMUST00000098213 3132 ntAPPRIS P1 TSL 5 BASIC2.26□□□□□ -2.05
ShhQ62226 Gm23060-201ENSMUST00000102345 109 ntBASIC2.26□□□□□ -2.05
ShhQ62226 Gm23950-201ENSMUST00000104026 129 ntBASIC2.26□□□□□ -2.05
ShhQ62226 Trav20-201ENSMUST00000142754 347 ntBASIC2.26□□□□□ -2.05
ShhQ62226 Gm23466-201ENSMUST00000157133 106 ntBASIC2.26□□□□□ -2.05
ShhQ62226 Gm23545-201ENSMUST00000158205 104 ntBASIC2.26□□□□□ -2.05
ShhQ62226 Gm22517-201ENSMUST00000158265 136 ntBASIC2.26□□□□□ -2.05
ShhQ62226 Gm25015-201ENSMUST00000158400 128 ntBASIC2.26□□□□□ -2.05
ShhQ62226 Gm22947-201ENSMUST00000158559 91 ntBASIC2.26□□□□□ -2.05
ShhQ62226 Gm23005-201ENSMUST00000158950 136 ntBASIC2.26□□□□□ -2.05
ShhQ62226 Gm37377-201ENSMUST00000191733 304 ntBASIC2.26□□□□□ -2.05
ShhQ62226 Gm33051-201ENSMUST00000192940 274 ntTSL 5 BASIC2.26□□□□□ -2.05
ShhQ62226 Gm37664-201ENSMUST00000194607 3813 ntBASIC2.26□□□□□ -2.05
ShhQ62226 Mir6925-201ENSMUST00000197857 70 ntBASIC2.26□□□□□ -2.05
ShhQ62226 Gm19118-201ENSMUST00000222554 98 ntBASIC2.26□□□□□ -2.05
ShhQ62226 AC122298.1-201ENSMUST00000222574 165 ntTSL 5 BASIC2.26□□□□□ -2.05
ShhQ62226 AC124104.1-201ENSMUST00000226279 417 ntBASIC2.26□□□□□ -2.05
ShhQ62226 AC168062.3-201ENSMUST00000227025 165 ntBASIC2.26□□□□□ -2.05
ShhQ62226 Gm9805-201ENSMUST00000055305 171 ntAPPRIS P1 BASIC2.26□□□□□ -2.05
ShhQ62226 Gm25401-201ENSMUST00000082975 106 ntBASIC2.26□□□□□ -2.05
ShhQ62226 Gm22744-201ENSMUST00000083444 65 ntBASIC2.26□□□□□ -2.05
ShhQ62226 Skint5-202ENSMUST00000169631 4497 ntAPPRIS P5 TSL 1 (best) BASIC2.26□□□□□ -2.05
ShhQ62226 Gm44114-201ENSMUST00000203270 2727 ntBASIC2.26□□□□□ -2.05
ShhQ62226 Gm45518-201ENSMUST00000210776 2583 ntTSL 1 (best) BASIC2.25□□□□□ -2.05
ShhQ62226 Zfp160-201ENSMUST00000088811 3791 ntAPPRIS P1 TSL 1 (best) BASIC2.25□□□□□ -2.05
ShhQ62226 Gm12080-201ENSMUST00000119821 1883 ntBASIC2.25□□□□□ -2.05
ShhQ62226 Gm22483-201ENSMUST00000157986 274 ntBASIC2.25□□□□□ -2.05
ShhQ62226 Gm17161-201ENSMUST00000169187 524 ntBASIC2.25□□□□□ -2.05
ShhQ62226 Gm44352-201ENSMUST00000196358 110 ntBASIC2.25□□□□□ -2.05
ShhQ62226 Gm43563-201ENSMUST00000196761 198 ntBASIC2.25□□□□□ -2.05
ShhQ62226 Gm9251-201ENSMUST00000197202 628 ntBASIC2.25□□□□□ -2.05
ShhQ62226 Gm20083-201ENSMUST00000205849 751 ntTSL 3 BASIC2.25□□□□□ -2.05
ShhQ62226 Gm44555-201ENSMUST00000209008 148 ntBASIC2.25□□□□□ -2.05
ShhQ62226 Hmgb1l-201ENSMUST00000082150 571 ntBASIC2.25□□□□□ -2.05
ShhQ62226 F8-202ENSMUST00000114085 7295 ntAPPRIS ALT2 TSL 1 (best) BASIC2.25□□□□□ -2.05
ShhQ62226 Snora36b-201ENSMUST00000104383 132 ntBASIC2.24□□□□□ -2.05
ShhQ62226 Snord19-201ENSMUST00000104609 76 ntBASIC2.24□□□□□ -2.05
ShhQ62226 Gm11712-201ENSMUST00000129139 367 ntTSL 5 BASIC2.24□□□□□ -2.05
ShhQ62226 Gm23599-201ENSMUST00000157261 251 ntBASIC2.24□□□□□ -2.05
ShhQ62226 Gm23858-201ENSMUST00000158384 106 ntBASIC2.24□□□□□ -2.05
ShhQ62226 Gm25711-201ENSMUST00000158633 128 ntBASIC2.24□□□□□ -2.05
ShhQ62226 Gm27803-201ENSMUST00000183763 119 ntBASIC2.24□□□□□ -2.05
ShhQ62226 Mir7026-201ENSMUST00000184384 67 ntBASIC2.24□□□□□ -2.05
ShhQ62226 Mir6481-201ENSMUST00000184617 110 ntBASIC2.24□□□□□ -2.05
ShhQ62226 Gm44408-201ENSMUST00000200205 66 ntBASIC2.24□□□□□ -2.05
ShhQ62226 Olfr1309-205ENSMUST00000216948 5168 ntAPPRIS P1 TSL 5 BASIC2.23□□□□□ -2.05
ShhQ62226 Gm26077-201ENSMUST00000104064 123 ntBASIC2.23□□□□□ -2.05
ShhQ62226 Gm25783-201ENSMUST00000122525 190 ntBASIC2.23□□□□□ -2.05
ShhQ62226 n-R5s191-201ENSMUST00000122724 116 ntBASIC2.23□□□□□ -2.05
ShhQ62226 Mir1967-201ENSMUST00000157789 82 ntBASIC2.23□□□□□ -2.05
ShhQ62226 Gm23033-201ENSMUST00000157996 134 ntBASIC2.23□□□□□ -2.05
ShhQ62226 Gm17052-201ENSMUST00000165496 289 ntBASIC2.23□□□□□ -2.05
ShhQ62226 Gm17113-201ENSMUST00000170118 171 ntBASIC2.23□□□□□ -2.05
ShhQ62226 Gm23190-201ENSMUST00000180307 64 ntBASIC2.23□□□□□ -2.05
ShhQ62226 Gm3852-201ENSMUST00000182781 264 ntBASIC2.23□□□□□ -2.05
ShhQ62226 Gm28376-201ENSMUST00000186604 176 ntTSL 5 BASIC2.23□□□□□ -2.05
ShhQ62226 Gm2077-201ENSMUST00000195017 319 ntBASIC2.23□□□□□ -2.05
ShhQ62226 Gm45445-201ENSMUST00000209586 232 ntBASIC2.23□□□□□ -2.05
ShhQ62226 Gm7214-201ENSMUST00000222428 272 ntBASIC2.23□□□□□ -2.05
ShhQ62226 Gm26225-201ENSMUST00000082508 135 ntBASIC2.23□□□□□ -2.05
ShhQ62226 Snora19-201ENSMUST00000082962 132 ntBASIC2.23□□□□□ -2.05
ShhQ62226 Gm24457-201ENSMUST00000083196 105 ntBASIC2.23□□□□□ -2.05
ShhQ62226 Gm23658-201ENSMUST00000083233 132 ntBASIC2.23□□□□□ -2.05
ShhQ62226 AC161250.2-201ENSMUST00000215114 3107 ntBASIC2.23□□□□□ -2.05
ShhQ62226 Gm6185-201ENSMUST00000193379 3553 ntBASIC2.22□□□□□ -2.05
ShhQ62226 Mir374b-201ENSMUST00000102314 95 ntBASIC2.22□□□□□ -2.05
ShhQ62226 Gm24280-201ENSMUST00000104237 134 ntBASIC2.22□□□□□ -2.05
ShhQ62226 Gm13756-201ENSMUST00000117618 222 ntBASIC2.22□□□□□ -2.05
ShhQ62226 Gm12510-201ENSMUST00000152190 362 ntTSL 5 BASIC2.22□□□□□ -2.05
ShhQ62226 Gm24440-201ENSMUST00000157236 63 ntBASIC2.22□□□□□ -2.05
ShhQ62226 Gm16326-201ENSMUST00000162843 414 ntBASIC2.22□□□□□ -2.05
ShhQ62226 Gm24512-201ENSMUST00000174963 65 ntBASIC2.22□□□□□ -2.05
ShhQ62226 Gm23289-201ENSMUST00000175615 108 ntBASIC2.22□□□□□ -2.05
ShhQ62226 Gm24304-201ENSMUST00000177635 107 ntBASIC2.22□□□□□ -2.05
ShhQ62226 Gm29014-201ENSMUST00000191422 326 ntBASIC2.22□□□□□ -2.05
ShhQ62226 CT030687.1-201ENSMUST00000221854 162 ntBASIC2.22□□□□□ -2.05
ShhQ62226 Gm26493-201ENSMUST00000083155 136 ntBASIC2.22□□□□□ -2.05
ShhQ62226 Gm22169-201ENSMUST00000083229 107 ntBASIC2.22□□□□□ -2.05
ShhQ62226 Vmn1r78-202ENSMUST00000228244 7931 ntAPPRIS P1 BASIC2.22□□□□□ -2.05
ShhQ62226 Usp9y-201ENSMUST00000091188 8094 ntAPPRIS P1 TSL 1 (best) BASIC2.22□□□□□ -2.05
ShhQ62226 Gm22752-201ENSMUST00000102083 109 ntBASIC2.21□□□□□ -2.06
ShhQ62226 Mir466h-201ENSMUST00000104748 81 ntBASIC2.21□□□□□ -2.06
ShhQ62226 Gm14491-201ENSMUST00000121919 199 ntBASIC2.21□□□□□ -2.06
ShhQ62226 Gm26026-201ENSMUST00000122726 123 ntBASIC2.21□□□□□ -2.06
ShhQ62226 Gm23324-201ENSMUST00000157421 131 ntBASIC2.21□□□□□ -2.06
ShhQ62226 Gm22217-201ENSMUST00000157556 313 ntBASIC2.21□□□□□ -2.06
ShhQ62226 Gm24771-201ENSMUST00000158508 137 ntBASIC2.21□□□□□ -2.06
Retrieved 100 of 76,532 protein–RNA pairs in 83.3 ms