Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 AC166343.1-201ENSMUST00000213261 577 ntBASIC3.81□□□□□ -1.8
Rnf40Q3U319 Gm24626-201ENSMUST00000082621 161 ntBASIC3.81□□□□□ -1.8
Rnf40Q3U319 Gm23443-201ENSMUST00000082916 128 ntBASIC3.81□□□□□ -1.8
Rnf40Q3U319 Gm24203-201ENSMUST00000082949 114 ntBASIC3.81□□□□□ -1.8
Rnf40Q3U319 Mir34b-201ENSMUST00000083558 84 ntBASIC3.81□□□□□ -1.8
Rnf40Q3U319 Gm37494-202ENSMUST00000188038 16021 ntTSL 5 BASIC3.81□□□□□ -1.8
Rnf40Q3U319 Themis-201ENSMUST00000056097 5082 ntAPPRIS P2 TSL 1 (best) BASIC3.8□□□□□ -1.8
Rnf40Q3U319 Olfr1447-203ENSMUST00000216989 2586 ntAPPRIS P1 TSL 5 BASIC3.8□□□□□ -1.8
Rnf40Q3U319 Ms4a14-201ENSMUST00000187467 4065 ntAPPRIS P1 TSL 5 BASIC3.8□□□□□ -1.8
Rnf40Q3U319 Gm43268-201ENSMUST00000201536 4055 ntBASIC3.8□□□□□ -1.8
Rnf40Q3U319 Olfm3-201ENSMUST00000051309 3928 ntAPPRIS P4 TSL 1 (best) BASIC3.8□□□□□ -1.8
Rnf40Q3U319 Gm26425-201ENSMUST00000122529 82 ntBASIC3.8□□□□□ -1.8
Rnf40Q3U319 Gm3848-202ENSMUST00000151564 301 ntTSL 3 BASIC3.8□□□□□ -1.8
Rnf40Q3U319 Gm22963-201ENSMUST00000157960 91 ntBASIC3.8□□□□□ -1.8
Rnf40Q3U319 Gm23858-201ENSMUST00000158384 106 ntBASIC3.8□□□□□ -1.8
Rnf40Q3U319 Mir6907-201ENSMUST00000183764 71 ntBASIC3.8□□□□□ -1.8
Rnf40Q3U319 Gm27805-201ENSMUST00000184513 79 ntBASIC3.8□□□□□ -1.8
Rnf40Q3U319 Mir6928-201ENSMUST00000185166 70 ntBASIC3.8□□□□□ -1.8
Rnf40Q3U319 Gm9156-201ENSMUST00000189660 463 ntBASIC3.8□□□□□ -1.8
Rnf40Q3U319 Gm44482-201ENSMUST00000199232 103 ntBASIC3.8□□□□□ -1.8
Rnf40Q3U319 Gm44459-201ENSMUST00000203926 160 ntBASIC3.8□□□□□ -1.8
Rnf40Q3U319 AC125379.1-201ENSMUST00000221928 111 ntBASIC3.8□□□□□ -1.8
Rnf40Q3U319 AC140344.1-201ENSMUST00000223384 387 ntBASIC3.8□□□□□ -1.8
Rnf40Q3U319 1700010L04Rik-201ENSMUST00000032872 330 ntTSL 5 BASIC3.8□□□□□ -1.8
Rnf40Q3U319 Hmgb1l-201ENSMUST00000082150 571 ntBASIC3.8□□□□□ -1.8
Rnf40Q3U319 Gm24524-201ENSMUST00000082925 170 ntBASIC3.8□□□□□ -1.8
Rnf40Q3U319 Gm10212-201ENSMUST00000087884 324 ntBASIC3.8□□□□□ -1.8
Rnf40Q3U319 Fam81b-201ENSMUST00000208418 2760 ntAPPRIS P1 TSL 5 BASIC3.8□□□□□ -1.8
Rnf40Q3U319 A230004M16Rik-202ENSMUST00000139508 4468 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
Rnf40Q3U319 Gm42801-201ENSMUST00000202562 2865 ntBASIC3.79□□□□□ -1.8
Rnf40Q3U319 Gm23481-201ENSMUST00000104173 131 ntBASIC3.79□□□□□ -1.8
Rnf40Q3U319 Gm15466-201ENSMUST00000122299 333 ntBASIC3.79□□□□□ -1.8
Rnf40Q3U319 Gm22221-201ENSMUST00000157362 103 ntBASIC3.79□□□□□ -1.8
Rnf40Q3U319 Gm25888-201ENSMUST00000157778 302 ntBASIC3.79□□□□□ -1.8
Rnf40Q3U319 Gm22163-201ENSMUST00000158408 135 ntBASIC3.79□□□□□ -1.8
Rnf40Q3U319 Gm44476-201ENSMUST00000196225 91 ntBASIC3.79□□□□□ -1.8
Rnf40Q3U319 Ccr3-201ENSMUST00000039171 3272 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
Rnf40Q3U319 Vmn2r-ps46-201ENSMUST00000172969 2556 ntBASIC3.79□□□□□ -1.8
Rnf40Q3U319 Olfr307-202ENSMUST00000213705 4498 ntAPPRIS P1 TSL 5 BASIC3.79□□□□□ -1.8
Rnf40Q3U319 9330159F19Rik-201ENSMUST00000092627 5681 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
Rnf40Q3U319 Olfr609-202ENSMUST00000216075 3429 ntAPPRIS P1 TSL 5 BASIC3.78□□□□□ -1.8
Rnf40Q3U319 Oog1-202ENSMUST00000222112 2451 ntAPPRIS ALT2 TSL 1 (best) BASIC3.78□□□□□ -1.8
Rnf40Q3U319 Trbv13-1-201ENSMUST00000103268 334 ntAPPRIS ALT2 BASIC3.78□□□□□ -1.8
Rnf40Q3U319 Gm23898-201ENSMUST00000158111 103 ntBASIC3.78□□□□□ -1.8
Rnf40Q3U319 Gm25224-201ENSMUST00000158195 68 ntBASIC3.78□□□□□ -1.8
Rnf40Q3U319 Gm22501-201ENSMUST00000158981 127 ntBASIC3.78□□□□□ -1.8
Rnf40Q3U319 Gm6625-201ENSMUST00000177870 272 ntBASIC3.78□□□□□ -1.8
Rnf40Q3U319 Gm27446-201ENSMUST00000183963 89 ntBASIC3.78□□□□□ -1.8
Rnf40Q3U319 Mir6537-201ENSMUST00000184150 110 ntBASIC3.78□□□□□ -1.8
Rnf40Q3U319 Gm27695-201ENSMUST00000184301 91 ntBASIC3.78□□□□□ -1.8
Rnf40Q3U319 Mir6914-201ENSMUST00000184999 69 ntBASIC3.78□□□□□ -1.8
Rnf40Q3U319 Trbv7-201ENSMUST00000193339 402 ntBASIC3.78□□□□□ -1.8
Rnf40Q3U319 Gm44024-201ENSMUST00000203008 476 ntBASIC3.78□□□□□ -1.8
Rnf40Q3U319 AC134596.2-201ENSMUST00000222158 171 ntBASIC3.78□□□□□ -1.8
Rnf40Q3U319 Prlr-202ENSMUST00000124470 9900 ntAPPRIS P3 TSL 1 (best) BASIC3.78□□□□□ -1.8
Rnf40Q3U319 AC154515.1-201ENSMUST00000226085 2841 ntBASIC3.77□□□□□ -1.81
Rnf40Q3U319 Gm45178-201ENSMUST00000207744 4110 ntBASIC3.77□□□□□ -1.81
Rnf40Q3U319 Gm28669-201ENSMUST00000188400 100 ntBASIC3.77□□□□□ -1.81
Rnf40Q3U319 AC098718.1-201ENSMUST00000226166 175 ntBASIC3.77□□□□□ -1.81
Rnf40Q3U319 Rictor-201ENSMUST00000061656 9312 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
Rnf40Q3U319 Gm13862-201ENSMUST00000121220 197 ntBASIC3.76□□□□□ -1.81
Rnf40Q3U319 Gm24593-201ENSMUST00000122507 106 ntBASIC3.76□□□□□ -1.81
Rnf40Q3U319 Gm23261-201ENSMUST00000158316 136 ntBASIC3.76□□□□□ -1.81
Rnf40Q3U319 Gm1992-201ENSMUST00000161581 250 ntTSL 3 BASIC3.76□□□□□ -1.81
Rnf40Q3U319 Gm20538-201ENSMUST00000166808 225 ntAPPRIS P1 TSL 3 BASIC3.76□□□□□ -1.81
Rnf40Q3U319 Gm25950-201ENSMUST00000175331 100 ntBASIC3.76□□□□□ -1.81
Rnf40Q3U319 Gm23369-201ENSMUST00000175406 105 ntBASIC3.76□□□□□ -1.81
Rnf40Q3U319 Gm25200-201ENSMUST00000083094 130 ntBASIC3.76□□□□□ -1.81
Rnf40Q3U319 Olfr65-201ENSMUST00000106864 2648 ntAPPRIS ALT1 TSL 5 BASIC3.76□□□□□ -1.81
Rnf40Q3U319 Dock11-203ENSMUST00000115266 6047 ntTSL 5 BASIC3.75□□□□□ -1.81
Rnf40Q3U319 Gm24119-201ENSMUST00000103979 246 ntBASIC3.75□□□□□ -1.81
Rnf40Q3U319 Rps15a-ps6-201ENSMUST00000117476 393 ntBASIC3.75□□□□□ -1.81
Rnf40Q3U319 Gm16250-201ENSMUST00000148974 256 ntBASIC3.75□□□□□ -1.81
Rnf40Q3U319 Gm24649-201ENSMUST00000157106 134 ntBASIC3.75□□□□□ -1.81
Rnf40Q3U319 Gm27582-201ENSMUST00000184084 126 ntBASIC3.75□□□□□ -1.81
Rnf40Q3U319 Gm43977-201ENSMUST00000203970 189 ntBASIC3.75□□□□□ -1.81
Rnf40Q3U319 CT030161.1-201ENSMUST00000218411 124 ntBASIC3.75□□□□□ -1.81
Rnf40Q3U319 AC114575.1-201ENSMUST00000218634 353 ntTSL 3 BASIC3.75□□□□□ -1.81
Rnf40Q3U319 Gm19563-201ENSMUST00000222031 270 ntBASIC3.75□□□□□ -1.81
Rnf40Q3U319 Olfr1369-ps1-204ENSMUST00000215207 3794 ntAPPRIS P1 TSL 5 BASIC3.75□□□□□ -1.81
Rnf40Q3U319 Olfr1168-202ENSMUST00000215996 2322 ntAPPRIS P1 TSL 3 BASIC3.75□□□□□ -1.81
Rnf40Q3U319 Pkhd1l1-202ENSMUST00000166957 12747 ntTSL 5 BASIC3.75□□□□□ -1.81
Rnf40Q3U319 Pkhd1l1-201ENSMUST00000038336 12741 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
Rnf40Q3U319 A630033H20Rik-201ENSMUST00000067249 3004 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
Rnf40Q3U319 Gm44240-201ENSMUST00000204015 2654 ntBASIC3.74□□□□□ -1.81
Rnf40Q3U319 Olfr483-202ENSMUST00000215159 2691 ntAPPRIS P1 TSL 3 BASIC3.74□□□□□ -1.81
Rnf40Q3U319 Gm13479-201ENSMUST00000130773 4722 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
Rnf40Q3U319 Rpl31-ps14-201ENSMUST00000143596 378 ntBASIC3.74□□□□□ -1.81
Rnf40Q3U319 Gm25386-201ENSMUST00000157814 288 ntBASIC3.74□□□□□ -1.81
Rnf40Q3U319 Gm25438-201ENSMUST00000158281 110 ntBASIC3.74□□□□□ -1.81
Rnf40Q3U319 Gm27648-201ENSMUST00000184315 107 ntBASIC3.74□□□□□ -1.81
Rnf40Q3U319 Gm38997-201ENSMUST00000205669 304 ntTSL 5 BASIC3.74□□□□□ -1.81
Rnf40Q3U319 Olfr681-205ENSMUST00000216247 4729 ntAPPRIS P1 TSL 5 BASIC3.74□□□□□ -1.81
Rnf40Q3U319 Gm23056-201ENSMUST00000082803 111 ntBASIC3.74□□□□□ -1.81
Rnf40Q3U319 Gm23246-201ENSMUST00000083371 67 ntBASIC3.74□□□□□ -1.81
Rnf40Q3U319 Zbtb41-201ENSMUST00000039867 8361 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
Rnf40Q3U319 Slc25a36-201ENSMUST00000035024 4043 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
Rnf40Q3U319 Gm22758-201ENSMUST00000102275 96 ntBASIC3.73□□□□□ -1.81
Rnf40Q3U319 Gm13885-201ENSMUST00000117569 187 ntBASIC3.73□□□□□ -1.81
Rnf40Q3U319 Gm11792-201ENSMUST00000120640 168 ntBASIC3.73□□□□□ -1.81
Retrieved 100 of 76,532 protein–RNA pairs in 97.5 ms