Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Gm21861-201ENSMUST00000179480 498 ntTSL 5 BASIC1.53□□□□□ -2.16
Scn4aQ9ER60 Gm21256-201ENSMUST00000179672 498 ntTSL 5 BASIC1.53□□□□□ -2.16
Scn4aQ9ER60 Gm20838-201ENSMUST00000179884 498 ntTSL 5 BASIC1.53□□□□□ -2.16
Scn4aQ9ER60 Gm22263-201ENSMUST00000180060 104 ntBASIC1.53□□□□□ -2.16
Scn4aQ9ER60 Gm21679-201ENSMUST00000180373 498 ntAPPRIS P1 TSL 5 BASIC1.53□□□□□ -2.16
Scn4aQ9ER60 AC165293.1-201ENSMUST00000219669 329 ntBASIC1.53□□□□□ -2.16
Scn4aQ9ER60 AC120540.2-201ENSMUST00000221716 387 ntBASIC1.53□□□□□ -2.16
Scn4aQ9ER60 Gm23721-201ENSMUST00000083005 107 ntBASIC1.53□□□□□ -2.16
Scn4aQ9ER60 Gm22365-201ENSMUST00000093750 117 ntBASIC1.53□□□□□ -2.16
Scn4aQ9ER60 AC161250.2-201ENSMUST00000215114 3107 ntBASIC1.53□□□□□ -2.16
Scn4aQ9ER60 Gm13992-201ENSMUST00000120558 156 ntBASIC1.52□□□□□ -2.17
Scn4aQ9ER60 Gm24381-201ENSMUST00000122697 104 ntBASIC1.52□□□□□ -2.17
Scn4aQ9ER60 A130030D18Rik-201ENSMUST00000128608 654 ntTSL 1 (best) BASIC1.52□□□□□ -2.17
Scn4aQ9ER60 Gm23278-201ENSMUST00000157911 143 ntBASIC1.52□□□□□ -2.17
Scn4aQ9ER60 Gm20462-201ENSMUST00000172623 408 ntBASIC1.52□□□□□ -2.17
Scn4aQ9ER60 Gm27878-201ENSMUST00000184000 106 ntBASIC1.52□□□□□ -2.17
Scn4aQ9ER60 Olfr1070-ps1-201ENSMUST00000215939 388 ntBASIC1.52□□□□□ -2.17
Scn4aQ9ER60 4930543K20Rik-201ENSMUST00000217044 355 ntBASIC1.52□□□□□ -2.17
Scn4aQ9ER60 CT030687.1-201ENSMUST00000221854 162 ntBASIC1.52□□□□□ -2.17
Scn4aQ9ER60 AC104832.1-201ENSMUST00000222938 550 ntBASIC1.52□□□□□ -2.17
Scn4aQ9ER60 CT030166.3-201ENSMUST00000223203 193 ntBASIC1.52□□□□□ -2.17
Scn4aQ9ER60 Snord118-201ENSMUST00000082965 135 ntBASIC1.52□□□□□ -2.17
Scn4aQ9ER60 Traj20-201ENSMUST00000103721 58 ntAPPRIS P1 BASIC1.52□□□□□ -2.17
Scn4aQ9ER60 n-R5s158-201ENSMUST00000104095 118 ntBASIC1.52□□□□□ -2.17
Scn4aQ9ER60 Gm24555-201ENSMUST00000104548 124 ntBASIC1.52□□□□□ -2.17
Scn4aQ9ER60 Gm22193-201ENSMUST00000116868 76 ntBASIC1.52□□□□□ -2.17
Scn4aQ9ER60 Gm11859-201ENSMUST00000118099 455 ntBASIC1.52□□□□□ -2.17
Scn4aQ9ER60 Gm23983-201ENSMUST00000157142 114 ntBASIC1.52□□□□□ -2.17
Scn4aQ9ER60 Gm25961-201ENSMUST00000157174 135 ntBASIC1.52□□□□□ -2.17
Scn4aQ9ER60 Mir1949-201ENSMUST00000157434 141 ntBASIC1.52□□□□□ -2.17
Scn4aQ9ER60 Gm15446-203ENSMUST00000170826 192 ntTSL 5 BASIC1.52□□□□□ -2.17
Scn4aQ9ER60 Vmn1r-ps59-201ENSMUST00000172698 199 ntBASIC1.52□□□□□ -2.17
Scn4aQ9ER60 Gm18291-201ENSMUST00000190791 301 ntBASIC1.52□□□□□ -2.17
Scn4aQ9ER60 Gm36891-201ENSMUST00000191995 655 ntBASIC1.52□□□□□ -2.17
Scn4aQ9ER60 A730009L09Rik-202ENSMUST00000210306 201 ntAPPRIS ALT2 TSL 5 BASIC1.52□□□□□ -2.17
Scn4aQ9ER60 CT010505.1-201ENSMUST00000227026 396 ntBASIC1.52□□□□□ -2.17
Scn4aQ9ER60 Gm23627-201ENSMUST00000082459 107 ntBASIC1.52□□□□□ -2.17
Scn4aQ9ER60 Gm22502-201ENSMUST00000082488 107 ntBASIC1.52□□□□□ -2.17
Scn4aQ9ER60 Gm22977-201ENSMUST00000082615 107 ntBASIC1.52□□□□□ -2.17
Scn4aQ9ER60 Gm24149-201ENSMUST00000082757 107 ntBASIC1.52□□□□□ -2.17
Scn4aQ9ER60 Mir133a-1-201ENSMUST00000083465 68 ntBASIC1.52□□□□□ -2.17
Scn4aQ9ER60 4921511C20Rik-201ENSMUST00000051530 1606 ntAPPRIS P1 BASIC1.51□□□□□ -2.17
Scn4aQ9ER60 Mir669f-201ENSMUST00000103850 121 ntBASIC1.51□□□□□ -2.17
Scn4aQ9ER60 Rpl30-ps5-201ENSMUST00000117104 361 ntBASIC1.51□□□□□ -2.17
Scn4aQ9ER60 Gm13729-201ENSMUST00000120328 406 ntBASIC1.51□□□□□ -2.17
Scn4aQ9ER60 Vmn1r-ps116-201ENSMUST00000121544 292 ntBASIC1.51□□□□□ -2.17
Scn4aQ9ER60 Gm7953-201ENSMUST00000168278 469 ntBASIC1.51□□□□□ -2.17
Scn4aQ9ER60 Obox3-ps7-201ENSMUST00000176465 410 ntBASIC1.51□□□□□ -2.17
Scn4aQ9ER60 Gm22308-201ENSMUST00000177609 107 ntBASIC1.51□□□□□ -2.17
Scn4aQ9ER60 Gm28257-201ENSMUST00000185244 463 ntBASIC1.51□□□□□ -2.17
Scn4aQ9ER60 Gm28110-201ENSMUST00000185782 315 ntBASIC1.51□□□□□ -2.17
Scn4aQ9ER60 Gm29057-201ENSMUST00000186468 315 ntBASIC1.51□□□□□ -2.17
Scn4aQ9ER60 Gm28737-201ENSMUST00000186808 315 ntBASIC1.51□□□□□ -2.17
Scn4aQ9ER60 Gm29147-201ENSMUST00000186846 315 ntBASIC1.51□□□□□ -2.17
Scn4aQ9ER60 Gm29118-201ENSMUST00000186908 315 ntBASIC1.51□□□□□ -2.17
Scn4aQ9ER60 Gm28433-201ENSMUST00000187085 315 ntBASIC1.51□□□□□ -2.17
Scn4aQ9ER60 Gm29227-201ENSMUST00000187139 315 ntBASIC1.51□□□□□ -2.17
Scn4aQ9ER60 Gm28759-201ENSMUST00000187621 315 ntBASIC1.51□□□□□ -2.17
Scn4aQ9ER60 Gm28831-201ENSMUST00000187739 315 ntBASIC1.51□□□□□ -2.17
Scn4aQ9ER60 Gm29034-201ENSMUST00000188099 315 ntBASIC1.51□□□□□ -2.17
Scn4aQ9ER60 Gm28752-201ENSMUST00000188340 315 ntBASIC1.51□□□□□ -2.17
Scn4aQ9ER60 Gm28569-201ENSMUST00000188748 315 ntBASIC1.51□□□□□ -2.17
Scn4aQ9ER60 Gm28120-201ENSMUST00000188812 315 ntBASIC1.51□□□□□ -2.17
Scn4aQ9ER60 Gm28369-201ENSMUST00000188993 315 ntBASIC1.51□□□□□ -2.17
Scn4aQ9ER60 Gm28537-201ENSMUST00000189026 315 ntBASIC1.51□□□□□ -2.17
Scn4aQ9ER60 Gm28861-201ENSMUST00000189681 315 ntBASIC1.51□□□□□ -2.17
Scn4aQ9ER60 Gm28717-201ENSMUST00000189950 315 ntBASIC1.51□□□□□ -2.17
Scn4aQ9ER60 Gm29180-201ENSMUST00000190003 315 ntBASIC1.51□□□□□ -2.17
Scn4aQ9ER60 Gm29575-201ENSMUST00000190597 315 ntBASIC1.51□□□□□ -2.17
Scn4aQ9ER60 Gm29631-201ENSMUST00000191065 315 ntBASIC1.51□□□□□ -2.17
Scn4aQ9ER60 Gm28160-201ENSMUST00000191229 315 ntBASIC1.51□□□□□ -2.17
Scn4aQ9ER60 Gm29469-201ENSMUST00000191448 315 ntBASIC1.51□□□□□ -2.17
Scn4aQ9ER60 Gm37129-201ENSMUST00000195791 315 ntBASIC1.51□□□□□ -2.17
Scn4aQ9ER60 Olfr778-ps1-201ENSMUST00000204517 207 ntBASIC1.51□□□□□ -2.17
Scn4aQ9ER60 Gm25589-201ENSMUST00000082502 166 ntBASIC1.51□□□□□ -2.17
Scn4aQ9ER60 Olfr1253-204ENSMUST00000215988 6332 ntAPPRIS P1 TSL 5 BASIC1.5□□□□□ -2.17
Scn4aQ9ER60 Gm24892-201ENSMUST00000122747 104 ntBASIC1.5□□□□□ -2.17
Scn4aQ9ER60 Gm22768-201ENSMUST00000158366 153 ntBASIC1.5□□□□□ -2.17
Scn4aQ9ER60 Gm22435-201ENSMUST00000158552 128 ntBASIC1.5□□□□□ -2.17
Scn4aQ9ER60 Gm24390-201ENSMUST00000179578 62 ntBASIC1.5□□□□□ -2.17
Scn4aQ9ER60 Ranbp2-ps10-201ENSMUST00000185097 385 ntBASIC1.5□□□□□ -2.17
Scn4aQ9ER60 Gm29603-201ENSMUST00000186792 334 ntBASIC1.5□□□□□ -2.17
Scn4aQ9ER60 Mir1291-201ENSMUST00000199842 117 ntBASIC1.5□□□□□ -2.17
Scn4aQ9ER60 Gm5023-201ENSMUST00000217442 587 ntBASIC1.5□□□□□ -2.17
Scn4aQ9ER60 Gm24356-201ENSMUST00000082859 106 ntBASIC1.5□□□□□ -2.17
Scn4aQ9ER60 Snora34-201ENSMUST00000083402 138 ntBASIC1.5□□□□□ -2.17
Scn4aQ9ER60 Gm26500-201ENSMUST00000101867 106 ntBASIC1.5□□□□□ -2.17
Scn4aQ9ER60 Gm25992-201ENSMUST00000102437 109 ntBASIC1.5□□□□□ -2.17
Scn4aQ9ER60 Gm24079-201ENSMUST00000104352 132 ntBASIC1.5□□□□□ -2.17
Scn4aQ9ER60 Gm24772-201ENSMUST00000158507 110 ntBASIC1.5□□□□□ -2.17
Scn4aQ9ER60 Gm24323-201ENSMUST00000175342 77 ntBASIC1.5□□□□□ -2.17
Scn4aQ9ER60 Gm44811-201ENSMUST00000209120 228 ntBASIC1.5□□□□□ -2.17
Scn4aQ9ER60 Gm8219-201ENSMUST00000218309 242 ntBASIC1.5□□□□□ -2.17
Scn4aQ9ER60 AC173482.4-201ENSMUST00000225096 348 ntBASIC1.5□□□□□ -2.17
Scn4aQ9ER60 Gm24152-201ENSMUST00000082764 163 ntBASIC1.5□□□□□ -2.17
Scn4aQ9ER60 Gm26164-201ENSMUST00000083793 104 ntBASIC1.5□□□□□ -2.17
Scn4aQ9ER60 Olfr385-202ENSMUST00000215689 1671 ntAPPRIS P1 TSL 5 BASIC1.49□□□□□ -2.17
Scn4aQ9ER60 A630081D01Rik-201ENSMUST00000195842 1833 ntBASIC1.49□□□□□ -2.17
Scn4aQ9ER60 Mir465b-1-201ENSMUST00000103940 79 ntBASIC1.49□□□□□ -2.17
Scn4aQ9ER60 Mir465b-2-201ENSMUST00000104662 79 ntBASIC1.49□□□□□ -2.17
Retrieved 100 of 76,532 protein–RNA pairs in 163.9 ms