Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Gm12143-201ENSMUST00000119666 332 ntBASIC2.33□□□□□ -2.04
ShhQ62226 Gm25488-201ENSMUST00000158728 118 ntBASIC2.33□□□□□ -2.04
ShhQ62226 Gm24573-201ENSMUST00000175499 112 ntBASIC2.33□□□□□ -2.04
ShhQ62226 Gm25939-201ENSMUST00000179876 191 ntBASIC2.33□□□□□ -2.04
ShhQ62226 Gm25253-201ENSMUST00000179958 107 ntBASIC2.33□□□□□ -2.04
ShhQ62226 Gm20005-201ENSMUST00000202583 299 ntTSL 1 (best) BASIC2.33□□□□□ -2.04
ShhQ62226 Olfr797-ps1-201ENSMUST00000203614 415 ntBASIC2.33□□□□□ -2.04
ShhQ62226 Gm18346-201ENSMUST00000216782 325 ntBASIC2.33□□□□□ -2.04
ShhQ62226 Gm26126-201ENSMUST00000083188 164 ntBASIC2.33□□□□□ -2.04
ShhQ62226 Snord104-201ENSMUST00000083192 70 ntBASIC2.33□□□□□ -2.04
ShhQ62226 Mir322-201ENSMUST00000083484 95 ntBASIC2.33□□□□□ -2.04
ShhQ62226 Olfr479-202ENSMUST00000209805 2902 ntAPPRIS P1 TSL 5 BASIC2.33□□□□□ -2.04
ShhQ62226 Zfp638-212ENSMUST00000203891 3968 ntAPPRIS ALT2 TSL 5 BASIC2.33□□□□□ -2.04
ShhQ62226 Gm15303-201ENSMUST00000118676 2624 ntBASIC2.32□□□□□ -2.04
ShhQ62226 Adgrg4-205ENSMUST00000154818 8857 ntAPPRIS ALT2 TSL 5 BASIC2.32□□□□□ -2.04
ShhQ62226 Mir92-1-201ENSMUST00000102108 80 ntBASIC2.32□□□□□ -2.04
ShhQ62226 Trgj3-201ENSMUST00000103562 60 ntAPPRIS P1 BASIC2.32□□□□□ -2.04
ShhQ62226 Gm6897-201ENSMUST00000117714 138 ntBASIC2.32□□□□□ -2.04
ShhQ62226 Gm14758-201ENSMUST00000119104 138 ntBASIC2.32□□□□□ -2.04
ShhQ62226 Gm25113-201ENSMUST00000157185 143 ntBASIC2.32□□□□□ -2.04
ShhQ62226 Gm25115-201ENSMUST00000157187 140 ntBASIC2.32□□□□□ -2.04
ShhQ62226 Gm24436-201ENSMUST00000157889 302 ntBASIC2.32□□□□□ -2.04
ShhQ62226 Gm6788-201ENSMUST00000166459 270 ntBASIC2.32□□□□□ -2.04
ShhQ62226 Gm28627-201ENSMUST00000186141 453 ntBASIC2.32□□□□□ -2.04
ShhQ62226 Gm32175-201ENSMUST00000193641 346 ntBASIC2.32□□□□□ -2.04
ShhQ62226 Gm38064-201ENSMUST00000194032 444 ntTSL 3 BASIC2.32□□□□□ -2.04
ShhQ62226 Gm44478-201ENSMUST00000204875 114 ntBASIC2.32□□□□□ -2.04
ShhQ62226 Gm45508-201ENSMUST00000209298 299 ntBASIC2.32□□□□□ -2.04
ShhQ62226 Gm11351-202ENSMUST00000225724 478 ntBASIC2.32□□□□□ -2.04
ShhQ62226 Gm23249-201ENSMUST00000083369 161 ntBASIC2.32□□□□□ -2.04
ShhQ62226 Ifi209-201ENSMUST00000056071 3439 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
ShhQ62226 Gm3867-202ENSMUST00000181639 2007 ntTSL 2 BASIC2.32□□□□□ -2.04
ShhQ62226 Gm12721-201ENSMUST00000120621 268 ntBASIC2.31□□□□□ -2.04
ShhQ62226 Gm13433-201ENSMUST00000121701 240 ntBASIC2.31□□□□□ -2.04
ShhQ62226 n-R5s189-201ENSMUST00000122675 114 ntBASIC2.31□□□□□ -2.04
ShhQ62226 Gm25720-201ENSMUST00000157503 105 ntBASIC2.31□□□□□ -2.04
ShhQ62226 Gm22097-201ENSMUST00000157929 278 ntBASIC2.31□□□□□ -2.04
ShhQ62226 Gm22803-201ENSMUST00000158049 283 ntBASIC2.31□□□□□ -2.04
ShhQ62226 Mir6997-201ENSMUST00000184313 71 ntBASIC2.31□□□□□ -2.04
ShhQ62226 Gm29262-201ENSMUST00000190084 196 ntBASIC2.31□□□□□ -2.04
ShhQ62226 Gm28992-201ENSMUST00000190534 139 ntBASIC2.31□□□□□ -2.04
ShhQ62226 Gm37918-201ENSMUST00000192071 120 ntBASIC2.31□□□□□ -2.04
ShhQ62226 Gm37807-201ENSMUST00000194310 190 ntBASIC2.31□□□□□ -2.04
ShhQ62226 Gm2511-201ENSMUST00000205521 457 ntTSL 3 BASIC2.31□□□□□ -2.04
ShhQ62226 AC157476.1-201ENSMUST00000215555 169 ntBASIC2.31□□□□□ -2.04
ShhQ62226 AC166830.2-201ENSMUST00000225821 196 ntBASIC2.31□□□□□ -2.04
ShhQ62226 1700019M22Rik-201ENSMUST00000073560 354 ntBASIC2.31□□□□□ -2.04
ShhQ62226 Gm25130-201ENSMUST00000082650 156 ntBASIC2.31□□□□□ -2.04
ShhQ62226 Gm25199-201ENSMUST00000083095 104 ntBASIC2.31□□□□□ -2.04
ShhQ62226 Gm24977-201ENSMUST00000083106 163 ntBASIC2.31□□□□□ -2.04
ShhQ62226 Rex2-201ENSMUST00000075775 3993 ntAPPRIS P1 TSL 2 BASIC2.31□□□□□ -2.04
ShhQ62226 Vmn1r185-204ENSMUST00000227411 4928 ntAPPRIS P1 BASIC2.3□□□□□ -2.04
ShhQ62226 n-R5s26-201ENSMUST00000104601 122 ntBASIC2.3□□□□□ -2.04
ShhQ62226 Gm12512-201ENSMUST00000119620 217 ntBASIC2.3□□□□□ -2.04
ShhQ62226 Gm24594-201ENSMUST00000122502 99 ntBASIC2.3□□□□□ -2.04
ShhQ62226 Gm22281-201ENSMUST00000157198 103 ntBASIC2.3□□□□□ -2.04
ShhQ62226 Gm23536-201ENSMUST00000157541 134 ntBASIC2.3□□□□□ -2.04
ShhQ62226 Gm28020-201ENSMUST00000157739 67 ntBASIC2.3□□□□□ -2.04
ShhQ62226 Gm21060-201ENSMUST00000179346 168 ntAPPRIS P1 BASIC2.3□□□□□ -2.04
ShhQ62226 Gm27476-201ENSMUST00000183366 104 ntBASIC2.3□□□□□ -2.04
ShhQ62226 Mir1291-201ENSMUST00000199842 117 ntBASIC2.3□□□□□ -2.04
ShhQ62226 Gm45522-201ENSMUST00000210784 166 ntBASIC2.3□□□□□ -2.04
ShhQ62226 AC159896.1-201ENSMUST00000215264 215 ntBASIC2.3□□□□□ -2.04
ShhQ62226 Snora34-201ENSMUST00000083402 138 ntBASIC2.3□□□□□ -2.04
ShhQ62226 Zfp273-201ENSMUST00000012725 2277 ntTSL 1 (best) BASIC2.3□□□□□ -2.04
ShhQ62226 C630028M04Rik-201ENSMUST00000141452 3387 ntTSL 1 (best) BASIC2.3□□□□□ -2.04
ShhQ62226 Olfr339-202ENSMUST00000216645 4867 ntAPPRIS P1 TSL 3 BASIC2.3□□□□□ -2.04
ShhQ62226 Gm45393-201ENSMUST00000211634 2631 ntBASIC2.29□□□□□ -2.04
ShhQ62226 Gm7145-201ENSMUST00000185381 1794 ntAPPRIS P1 TSL 3 BASIC2.29□□□□□ -2.04
ShhQ62226 Mir767-201ENSMUST00000103256 107 ntBASIC2.29□□□□□ -2.04
ShhQ62226 Mir344e-201ENSMUST00000104677 66 ntBASIC2.29□□□□□ -2.04
ShhQ62226 Gm11192-201ENSMUST00000127017 151 ntTSL 1 (best) BASIC2.29□□□□□ -2.04
ShhQ62226 Gm16355-201ENSMUST00000128606 231 ntBASIC2.29□□□□□ -2.04
ShhQ62226 Gm20613-201ENSMUST00000175828 345 ntBASIC2.29□□□□□ -2.04
ShhQ62226 Gm23864-201ENSMUST00000177607 107 ntBASIC2.29□□□□□ -2.04
ShhQ62226 Gm44482-201ENSMUST00000199232 103 ntBASIC2.29□□□□□ -2.04
ShhQ62226 5430435K18Rik-201ENSMUST00000202597 661 ntTSL 1 (best) BASIC2.29□□□□□ -2.04
ShhQ62226 Gm22972-201ENSMUST00000083297 131 ntBASIC2.29□□□□□ -2.04
ShhQ62226 Mir340-201ENSMUST00000083483 98 ntBASIC2.29□□□□□ -2.04
ShhQ62226 Vmn1r178-202ENSMUST00000226450 2880 ntAPPRIS P1 BASIC2.29□□□□□ -2.04
ShhQ62226 Snhg14-209ENSMUST00000188976 2193 ntTSL 1 (best) BASIC2.29□□□□□ -2.04
ShhQ62226 AC152951.2-201ENSMUST00000218293 3587 ntBASIC2.29□□□□□ -2.04
ShhQ62226 Cd209e-201ENSMUST00000033888 1802 ntAPPRIS P1 TSL 1 (best) BASIC2.28□□□□□ -2.04
ShhQ62226 Olfr777-202ENSMUST00000204573 5407 ntAPPRIS P1 TSL 5 BASIC2.28□□□□□ -2.04
ShhQ62226 Ighv3-1-201ENSMUST00000103478 350 ntAPPRIS P1 BASIC2.28□□□□□ -2.04
ShhQ62226 Gm23600-201ENSMUST00000157260 71 ntBASIC2.28□□□□□ -2.04
ShhQ62226 Gm25390-201ENSMUST00000157341 103 ntBASIC2.28□□□□□ -2.04
ShhQ62226 Gm25654-201ENSMUST00000158467 88 ntBASIC2.28□□□□□ -2.04
ShhQ62226 Gm44666-201ENSMUST00000208544 391 ntBASIC2.28□□□□□ -2.04
ShhQ62226 AC125350.4-201ENSMUST00000225895 273 ntBASIC2.28□□□□□ -2.04
ShhQ62226 Gm25124-201ENSMUST00000083345 164 ntBASIC2.28□□□□□ -2.04
ShhQ62226 Gm10719-202ENSMUST00000099049 675 ntAPPRIS ALT2 TSL 5 BASIC2.28□□□□□ -2.04
ShhQ62226 Gm38071-201ENSMUST00000195792 3378 ntBASIC2.28□□□□□ -2.04
ShhQ62226 AC152979.2-201ENSMUST00000219702 3814 ntBASIC2.28□□□□□ -2.04
ShhQ62226 Olfr394-202ENSMUST00000214284 5562 ntAPPRIS P1 TSL 5 BASIC2.27□□□□□ -2.05
ShhQ62226 Zfp735-201ENSMUST00000080407 3746 ntAPPRIS P1 TSL 1 (best) BASIC2.27□□□□□ -2.05
ShhQ62226 Gm26135-201ENSMUST00000101993 72 ntBASIC2.27□□□□□ -2.05
ShhQ62226 Gm24283-201ENSMUST00000104233 107 ntBASIC2.27□□□□□ -2.05
ShhQ62226 Gm14838-201ENSMUST00000118913 248 ntBASIC2.27□□□□□ -2.05
ShhQ62226 Gm11204-201ENSMUST00000122438 147 ntBASIC2.27□□□□□ -2.05
Retrieved 100 of 76,532 protein–RNA pairs in 87 ms