Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Gm23039-201ENSMUST00000083870 161 ntBASIC2.39□□□□□ -2.03
ShhQ62226 2410141K09Rik-201ENSMUST00000091541 288 ntTSL 5 BASIC2.39□□□□□ -2.03
ShhQ62226 Gm24163-201ENSMUST00000093660 132 ntBASIC2.39□□□□□ -2.03
ShhQ62226 Olfr1186-202ENSMUST00000215912 1850 ntAPPRIS P1 TSL 5 BASIC2.39□□□□□ -2.03
ShhQ62226 Olfr1225-202ENSMUST00000216961 3231 ntAPPRIS P1 TSL 5 BASIC2.38□□□□□ -2.03
ShhQ62226 Pak3-210ENSMUST00000172330 8135 ntAPPRIS P3 TSL 1 (best) BASIC2.38□□□□□ -2.03
ShhQ62226 Mir541-201ENSMUST00000102097 90 ntBASIC2.38□□□□□ -2.03
ShhQ62226 Gm23836-201ENSMUST00000104434 129 ntBASIC2.38□□□□□ -2.03
ShhQ62226 Acer3-202ENSMUST00000120520 3964 ntTSL 1 (best) BASIC2.38□□□□□ -2.03
ShhQ62226 Gm24480-201ENSMUST00000157442 103 ntBASIC2.38□□□□□ -2.03
ShhQ62226 Gm23535-201ENSMUST00000157542 106 ntBASIC2.38□□□□□ -2.03
ShhQ62226 Gm17689-201ENSMUST00000170030 330 ntAPPRIS P1 TSL 1 (best) BASIC2.38□□□□□ -2.03
ShhQ62226 Gm27399-201ENSMUST00000184250 78 ntBASIC2.38□□□□□ -2.03
ShhQ62226 Gm27421-201ENSMUST00000184729 167 ntBASIC2.38□□□□□ -2.03
ShhQ62226 Mir7226-201ENSMUST00000184953 60 ntBASIC2.38□□□□□ -2.03
ShhQ62226 Gm19123-201ENSMUST00000190716 651 ntBASIC2.38□□□□□ -2.03
ShhQ62226 Gm42774-201ENSMUST00000198854 283 ntBASIC2.38□□□□□ -2.03
ShhQ62226 Gm45543-201ENSMUST00000209327 88 ntBASIC2.38□□□□□ -2.03
ShhQ62226 AC117198.1-201ENSMUST00000217080 651 ntTSL 5 BASIC2.38□□□□□ -2.03
ShhQ62226 Mir410-201ENSMUST00000083563 81 ntBASIC2.38□□□□□ -2.03
ShhQ62226 Gm23847-201ENSMUST00000083829 110 ntBASIC2.38□□□□□ -2.03
ShhQ62226 Gm42445-201ENSMUST00000196996 2893 ntBASIC2.38□□□□□ -2.03
ShhQ62226 Vmn2r72-201ENSMUST00000063425 2571 ntAPPRIS P1 TSL 5 BASIC2.38□□□□□ -2.03
ShhQ62226 Olfr1181-203ENSMUST00000213190 3934 ntAPPRIS P1 TSL 5 BASIC2.37□□□□□ -2.03
ShhQ62226 Olfr201-202ENSMUST00000216834 3706 ntAPPRIS P1 TSL 5 BASIC2.37□□□□□ -2.03
ShhQ62226 Gm25526-201ENSMUST00000104332 132 ntBASIC2.37□□□□□ -2.03
ShhQ62226 Gm23803-201ENSMUST00000104610 132 ntBASIC2.37□□□□□ -2.03
ShhQ62226 Gm14602-201ENSMUST00000118625 340 ntBASIC2.37□□□□□ -2.03
ShhQ62226 Gm13136-201ENSMUST00000121031 2950 ntBASIC2.37□□□□□ -2.03
ShhQ62226 Gm23048-201ENSMUST00000157237 129 ntBASIC2.37□□□□□ -2.03
ShhQ62226 Gm26105-201ENSMUST00000157253 190 ntBASIC2.37□□□□□ -2.03
ShhQ62226 Gm22145-201ENSMUST00000157396 148 ntBASIC2.37□□□□□ -2.03
ShhQ62226 Gm23670-201ENSMUST00000157469 119 ntBASIC2.37□□□□□ -2.03
ShhQ62226 Snord11-201ENSMUST00000158468 84 ntBASIC2.37□□□□□ -2.03
ShhQ62226 Rpl31-ps15-201ENSMUST00000181857 375 ntBASIC2.37□□□□□ -2.03
ShhQ62226 Mir6406-201ENSMUST00000183592 120 ntBASIC2.37□□□□□ -2.03
ShhQ62226 Gm19257-201ENSMUST00000186121 183 ntBASIC2.37□□□□□ -2.03
ShhQ62226 Gm6801-201ENSMUST00000190697 339 ntBASIC2.37□□□□□ -2.03
ShhQ62226 Gm42716-203ENSMUST00000197140 259 ntTSL 3 BASIC2.37□□□□□ -2.03
ShhQ62226 AC173345.2-201ENSMUST00000222795 153 ntBASIC2.37□□□□□ -2.03
ShhQ62226 AC183092.1-201ENSMUST00000224301 153 ntBASIC2.37□□□□□ -2.03
ShhQ62226 Gm25482-201ENSMUST00000083225 107 ntBASIC2.37□□□□□ -2.03
ShhQ62226 Vmn1r76-202ENSMUST00000226300 8189 ntAPPRIS ALT2 BASIC2.37□□□□□ -2.03
ShhQ62226 Gm42482-201ENSMUST00000198904 1947 ntBASIC2.36□□□□□ -2.03
ShhQ62226 Gm42785-201ENSMUST00000202316 3835 ntBASIC2.36□□□□□ -2.03
ShhQ62226 Gm24907-201ENSMUST00000116932 128 ntBASIC2.36□□□□□ -2.03
ShhQ62226 Gm27369-201ENSMUST00000185182 71 ntBASIC2.36□□□□□ -2.03
ShhQ62226 AC154552.7-201ENSMUST00000222824 156 ntBASIC2.36□□□□□ -2.03
ShhQ62226 CT033785.1-201ENSMUST00000224872 272 ntBASIC2.36□□□□□ -2.03
ShhQ62226 AC098718.2-201ENSMUST00000226822 285 ntBASIC2.36□□□□□ -2.03
ShhQ62226 Gm24204-201ENSMUST00000082950 107 ntBASIC2.36□□□□□ -2.03
ShhQ62226 Skint6-202ENSMUST00000171224 3723 ntAPPRIS P1 TSL 5 BASIC2.36□□□□□ -2.03
ShhQ62226 Il1rapl1-202ENSMUST00000113964 1936 ntTSL 1 (best) BASIC2.36□□□□□ -2.03
ShhQ62226 Olfr509-202ENSMUST00000213756 3547 ntAPPRIS P1 TSL 5 BASIC2.35□□□□□ -2.03
ShhQ62226 Gm23472-201ENSMUST00000101806 191 ntBASIC2.35□□□□□ -2.03
ShhQ62226 Gm24867-201ENSMUST00000104161 107 ntBASIC2.35□□□□□ -2.03
ShhQ62226 Gm25421-201ENSMUST00000104218 164 ntBASIC2.35□□□□□ -2.03
ShhQ62226 Gm13885-201ENSMUST00000117569 187 ntBASIC2.35□□□□□ -2.03
ShhQ62226 n-R5s150-201ENSMUST00000122705 108 ntBASIC2.35□□□□□ -2.03
ShhQ62226 Gm13467-201ENSMUST00000145568 281 ntTSL 5 BASIC2.35□□□□□ -2.03
ShhQ62226 Gm26411-201ENSMUST00000157668 107 ntBASIC2.35□□□□□ -2.03
ShhQ62226 Gm23381-201ENSMUST00000157676 94 ntBASIC2.35□□□□□ -2.03
ShhQ62226 Gm24006-201ENSMUST00000158462 132 ntBASIC2.35□□□□□ -2.03
ShhQ62226 Gm24497-201ENSMUST00000177868 191 ntBASIC2.35□□□□□ -2.03
ShhQ62226 Gm25933-201ENSMUST00000178943 108 ntBASIC2.35□□□□□ -2.03
ShhQ62226 Gm29406-201ENSMUST00000186400 235 ntTSL 5 BASIC2.35□□□□□ -2.03
ShhQ62226 Gm15235-201ENSMUST00000200572 194 ntBASIC2.35□□□□□ -2.03
ShhQ62226 Olfr454-ps1-201ENSMUST00000205206 348 ntBASIC2.35□□□□□ -2.03
ShhQ62226 Olfr800-202ENSMUST00000217094 3831 ntAPPRIS P1 TSL 3 BASIC2.35□□□□□ -2.03
ShhQ62226 Gm9174-201ENSMUST00000078149 255 ntBASIC2.35□□□□□ -2.03
ShhQ62226 Gm24625-201ENSMUST00000082622 130 ntBASIC2.35□□□□□ -2.03
ShhQ62226 Gm23444-201ENSMUST00000082922 191 ntBASIC2.35□□□□□ -2.03
ShhQ62226 Gm25789-201ENSMUST00000083294 76 ntBASIC2.35□□□□□ -2.03
ShhQ62226 Gm24164-201ENSMUST00000093663 104 ntBASIC2.35□□□□□ -2.03
ShhQ62226 Lipi-201ENSMUST00000062721 2082 ntAPPRIS P1 TSL 1 (best) BASIC2.35□□□□□ -2.03
ShhQ62226 AC123052.1-201ENSMUST00000220604 4616 ntBASIC2.34□□□□□ -2.03
ShhQ62226 Gm1980-201ENSMUST00000123131 2306 ntBASIC2.34□□□□□ -2.03
ShhQ62226 Olfr1201-203ENSMUST00000216213 2602 ntAPPRIS P1 TSL 5 BASIC2.34□□□□□ -2.03
ShhQ62226 Traj37-201ENSMUST00000103705 60 ntAPPRIS P1 BASIC2.34□□□□□ -2.03
ShhQ62226 Gm24670-201ENSMUST00000104154 132 ntBASIC2.34□□□□□ -2.03
ShhQ62226 Gm23492-201ENSMUST00000116837 115 ntBASIC2.34□□□□□ -2.03
ShhQ62226 Gm22193-201ENSMUST00000116868 76 ntBASIC2.34□□□□□ -2.03
ShhQ62226 Gm24896-201ENSMUST00000122741 135 ntBASIC2.34□□□□□ -2.03
ShhQ62226 Gm25888-201ENSMUST00000157778 302 ntBASIC2.34□□□□□ -2.03
ShhQ62226 Mir1936-201ENSMUST00000158699 93 ntBASIC2.34□□□□□ -2.03
ShhQ62226 Gm22259-201ENSMUST00000178926 107 ntBASIC2.34□□□□□ -2.03
ShhQ62226 Gm27753-201ENSMUST00000184742 203 ntBASIC2.34□□□□□ -2.03
ShhQ62226 Mir7017-201ENSMUST00000184894 62 ntBASIC2.34□□□□□ -2.03
ShhQ62226 Gm28647-201ENSMUST00000188416 197 ntBASIC2.34□□□□□ -2.03
ShhQ62226 Gm37746-201ENSMUST00000193249 198 ntBASIC2.34□□□□□ -2.03
ShhQ62226 Gm43676-201ENSMUST00000197532 540 ntBASIC2.34□□□□□ -2.03
ShhQ62226 Gm44477-201ENSMUST00000199661 110 ntBASIC2.34□□□□□ -2.03
ShhQ62226 Gm43264-201ENSMUST00000202284 325 ntBASIC2.34□□□□□ -2.03
ShhQ62226 Olfr1421-ps1-201ENSMUST00000208900 208 ntBASIC2.34□□□□□ -2.03
ShhQ62226 CT009696.2-201ENSMUST00000216668 432 ntBASIC2.34□□□□□ -2.03
ShhQ62226 Olfr623-202ENSMUST00000213840 3980 ntAPPRIS P1 TSL 5 BASIC2.34□□□□□ -2.04
ShhQ62226 Tlr7-202ENSMUST00000112161 3897 ntAPPRIS P1 TSL 1 (best) BASIC2.34□□□□□ -2.04
ShhQ62226 Olfr1177-ps-202ENSMUST00000216713 2821 ntAPPRIS P5 TSL 3 BASIC2.33□□□□□ -2.04
ShhQ62226 Gm24121-201ENSMUST00000102029 106 ntBASIC2.33□□□□□ -2.04
ShhQ62226 Gm25377-201ENSMUST00000104334 129 ntBASIC2.33□□□□□ -2.04
Retrieved 100 of 76,532 protein–RNA pairs in 96 ms