| Gli3 | Q61602 | Gm21209-201 | ENSMUST00000178556 | 567 nt | TSL 5 BASIC | 0.65 | □□□□□ -2.31 | | |
| Gli3 | Q61602 | Gm21258-201 | ENSMUST00000178673 | 567 nt | TSL 5 BASIC | 0.65 | □□□□□ -2.31 | | |
| Gli3 | Q61602 | Gm20888-201 | ENSMUST00000178934 | 567 nt | TSL 5 BASIC | 0.65 | □□□□□ -2.31 | | |
| Gli3 | Q61602 | Gm21650-201 | ENSMUST00000179073 | 567 nt | TSL 5 BASIC | 0.65 | □□□□□ -2.31 | | |
| Gli3 | Q61602 | Gm24390-201 | ENSMUST00000179578 | 62 nt | BASIC | 0.65 | □□□□□ -2.31 | | |
| Gli3 | Q61602 | Gm20937-201 | ENSMUST00000180329 | 567 nt | TSL 5 BASIC | 0.65 | □□□□□ -2.31 | | |
| Gli3 | Q61602 | Gm28560-201 | ENSMUST00000186091 | 315 nt | BASIC | 0.65 | □□□□□ -2.31 | | |
| Gli3 | Q61602 | Gm28334-201 | ENSMUST00000186653 | 315 nt | BASIC | 0.65 | □□□□□ -2.31 | | |
| Gli3 | Q61602 | Gm28409-201 | ENSMUST00000187064 | 103 nt | BASIC | 0.65 | □□□□□ -2.31 | | |
| Gli3 | Q61602 | Gm28495-201 | ENSMUST00000188452 | 315 nt | BASIC | 0.65 | □□□□□ -2.31 | | |
| Gli3 | Q61602 | Gm28232-201 | ENSMUST00000188683 | 315 nt | BASIC | 0.65 | □□□□□ -2.31 | | |
| Gli3 | Q61602 | Gm28481-201 | ENSMUST00000189231 | 315 nt | BASIC | 0.65 | □□□□□ -2.31 | | |
| Gli3 | Q61602 | Gm29059-201 | ENSMUST00000191534 | 315 nt | BASIC | 0.65 | □□□□□ -2.31 | | |
| Gli3 | Q61602 | Gm37765-201 | ENSMUST00000192395 | 315 nt | BASIC | 0.65 | □□□□□ -2.31 | | |
| Gli3 | Q61602 | Gm37237-201 | ENSMUST00000192893 | 315 nt | BASIC | 0.65 | □□□□□ -2.31 | | |
| Gli3 | Q61602 | Gm36968-201 | ENSMUST00000193737 | 315 nt | BASIC | 0.65 | □□□□□ -2.31 | | |
| Gli3 | Q61602 | Gm38290-201 | ENSMUST00000195238 | 315 nt | BASIC | 0.65 | □□□□□ -2.31 | | |
| Gli3 | Q61602 | Gm42570-201 | ENSMUST00000195937 | 292 nt | BASIC | 0.65 | □□□□□ -2.31 | | |
| Gli3 | Q61602 | Gm44828-201 | ENSMUST00000203745 | 106 nt | BASIC | 0.65 | □□□□□ -2.31 | | |
| Gli3 | Q61602 | Gm44990-201 | ENSMUST00000203922 | 217 nt | BASIC | 0.65 | □□□□□ -2.31 | | |
| Gli3 | Q61602 | Gm7495-201 | ENSMUST00000215099 | 426 nt | BASIC | 0.65 | □□□□□ -2.31 | | |
| Gli3 | Q61602 | AC162934.3-201 | ENSMUST00000223015 | 841 nt | BASIC | 0.65 | □□□□□ -2.31 | | |
| Gli3 | Q61602 | AC173482.4-201 | ENSMUST00000225096 | 348 nt | BASIC | 0.65 | □□□□□ -2.31 | | |
| Gli3 | Q61602 | CT025689.4-201 | ENSMUST00000225926 | 601 nt | BASIC | 0.65 | □□□□□ -2.31 | | |
| Gli3 | Q61602 | AC167669.4-201 | ENSMUST00000225967 | 140 nt | BASIC | 0.65 | □□□□□ -2.31 | | |
| Gli3 | Q61602 | Gm24588-201 | ENSMUST00000116696 | 83 nt | BASIC | 0.64 | □□□□□ -2.31 | | |
| Gli3 | Q61602 | Xlr4d-ps-201 | ENSMUST00000118894 | 646 nt | BASIC | 0.64 | □□□□□ -2.31 | | |
| Gli3 | Q61602 | Gm14937-201 | ENSMUST00000119709 | 208 nt | BASIC | 0.64 | □□□□□ -2.31 | | |
| Gli3 | Q61602 | Gm13246-201 | ENSMUST00000120994 | 315 nt | BASIC | 0.64 | □□□□□ -2.31 | | |
| Gli3 | Q61602 | Gm12823-201 | ENSMUST00000134494 | 318 nt | TSL 5 BASIC | 0.64 | □□□□□ -2.31 | | |
| Gli3 | Q61602 | Gm27490-201 | ENSMUST00000184754 | 128 nt | BASIC | 0.64 | □□□□□ -2.31 | | |
| Gli3 | Q61602 | Gm35212-201 | ENSMUST00000196672 | 606 nt | BASIC | 0.64 | □□□□□ -2.31 | | |
| Gli3 | Q61602 | Mir6915-201 | ENSMUST00000198839 | 69 nt | BASIC | 0.64 | □□□□□ -2.31 | | |
| Gli3 | Q61602 | Gm39231-201 | ENSMUST00000209813 | 501 nt | TSL 5 BASIC | 0.64 | □□□□□ -2.31 | | |
| Gli3 | Q61602 | Olfr838-ps1-201 | ENSMUST00000211872 | 977 nt | BASIC | 0.64 | □□□□□ -2.31 | | |
| Gli3 | Q61602 | AC127371.3-201 | ENSMUST00000228129 | 415 nt | BASIC | 0.64 | □□□□□ -2.31 | | |
| Gli3 | Q61602 | Zfp934-201 | ENSMUST00000082203 | 993 nt | TSL 5 BASIC | 0.64 | □□□□□ -2.31 | | |
| Gli3 | Q61602 | Gm4732-201 | ENSMUST00000118778 | 473 nt | BASIC | 0.63 | □□□□□ -2.31 | | |
| Gli3 | Q61602 | Gm13396-201 | ENSMUST00000120617 | 271 nt | BASIC | 0.63 | □□□□□ -2.31 | | |
| Gli3 | Q61602 | Gm14362-201 | ENSMUST00000121679 | 273 nt | BASIC | 0.63 | □□□□□ -2.31 | | |
| Gli3 | Q61602 | Gm23656-201 | ENSMUST00000122626 | 112 nt | BASIC | 0.63 | □□□□□ -2.31 | | |
| Gli3 | Q61602 | Gm14364-201 | ENSMUST00000129209 | 267 nt | BASIC | 0.63 | □□□□□ -2.31 | | |
| Gli3 | Q61602 | Gm15254-201 | ENSMUST00000149567 | 273 nt | BASIC | 0.63 | □□□□□ -2.31 | | |
| Gli3 | Q61602 | Gm23390-201 | ENSMUST00000157393 | 106 nt | BASIC | 0.63 | □□□□□ -2.31 | | |
| Gli3 | Q61602 | Gm22654-201 | ENSMUST00000157874 | 105 nt | BASIC | 0.63 | □□□□□ -2.31 | | |
| Gli3 | Q61602 | 9230113P08Rik-202 | ENSMUST00000176153 | 414 nt | APPRIS P5 TSL 5 BASIC | 0.63 | □□□□□ -2.31 | | |
| Gli3 | Q61602 | Gm27660-201 | ENSMUST00000184028 | 208 nt | BASIC | 0.63 | □□□□□ -2.31 | | |
| Gli3 | Q61602 | Gm37089-201 | ENSMUST00000195616 | 129 nt | BASIC | 0.63 | □□□□□ -2.31 | | |
| Gli3 | Q61602 | Olfr1304-ps1-201 | ENSMUST00000208032 | 189 nt | BASIC | 0.63 | □□□□□ -2.31 | | |
| Gli3 | Q61602 | AC164304.1-201 | ENSMUST00000226920 | 272 nt | BASIC | 0.63 | □□□□□ -2.31 | | |
| Gli3 | Q61602 | Stfa3-201 | ENSMUST00000068182 | 412 nt | APPRIS P1 TSL 1 (best) BASIC | 0.63 | □□□□□ -2.31 | | |
| Gli3 | Q61602 | Gm24282-201 | ENSMUST00000104232 | 66 nt | BASIC | 0.62 | □□□□□ -2.31 | | |
| Gli3 | Q61602 | Gm22591-201 | ENSMUST00000104243 | 106 nt | BASIC | 0.62 | □□□□□ -2.31 | | |
| Gli3 | Q61602 | Gm14399-202 | ENSMUST00000108929 | 813 nt | TSL 5 BASIC | 0.62 | □□□□□ -2.31 | | |
| Gli3 | Q61602 | Gm22193-201 | ENSMUST00000116868 | 76 nt | BASIC | 0.62 | □□□□□ -2.31 | | |
| Gli3 | Q61602 | Gm28214-201 | ENSMUST00000185663 | 420 nt | TSL 5 BASIC | 0.62 | □□□□□ -2.31 | | |
| Gli3 | Q61602 | Gm28956-201 | ENSMUST00000189047 | 427 nt | BASIC | 0.62 | □□□□□ -2.31 | | |
| Gli3 | Q61602 | AC117656.1-201 | ENSMUST00000225826 | 339 nt | BASIC | 0.62 | □□□□□ -2.31 | | |
| Gli3 | Q61602 | Gm5899-201 | ENSMUST00000071770 | 270 nt | BASIC | 0.62 | □□□□□ -2.31 | | |
| Gli3 | Q61602 | Mir293-201 | ENSMUST00000104841 | 80 nt | BASIC | 0.62 | □□□□□ -2.31 | | |
| Gli3 | Q61602 | Gm15485-201 | ENSMUST00000149095 | 258 nt | TSL 3 BASIC | 0.62 | □□□□□ -2.31 | | |
| Gli3 | Q61602 | Lce6a-202 | ENSMUST00000170676 | 485 nt | APPRIS P1 TSL 1 (best) BASIC | 0.62 | □□□□□ -2.31 | | |
| Gli3 | Q61602 | Gm44491-201 | ENSMUST00000196794 | 96 nt | BASIC | 0.62 | □□□□□ -2.31 | | |
| Gli3 | Q61602 | Gm44465-201 | ENSMUST00000199536 | 114 nt | BASIC | 0.62 | □□□□□ -2.31 | | |
| Gli3 | Q61602 | Mir691-201 | ENSMUST00000199719 | 78 nt | BASIC | 0.62 | □□□□□ -2.31 | | |
| Gli3 | Q61602 | AC156790.3-201 | ENSMUST00000226200 | 254 nt | BASIC | 0.62 | □□□□□ -2.31 | | |
| Gli3 | Q61602 | n-R5s18-201 | ENSMUST00000122740 | 121 nt | BASIC | 0.61 | □□□□□ -2.31 | | |
| Gli3 | Q61602 | Gm9593-201 | ENSMUST00000166034 | 469 nt | BASIC | 0.61 | □□□□□ -2.31 | | |
| Gli3 | Q61602 | Gm22851-201 | ENSMUST00000178741 | 94 nt | BASIC | 0.61 | □□□□□ -2.31 | | |
| Gli3 | Q61602 | Gm25074-201 | ENSMUST00000178782 | 94 nt | BASIC | 0.61 | □□□□□ -2.31 | | |
| Gli3 | Q61602 | Gm27421-201 | ENSMUST00000184729 | 167 nt | BASIC | 0.61 | □□□□□ -2.31 | | |
| Gli3 | Q61602 | Gm29134-201 | ENSMUST00000186579 | 126 nt | BASIC | 0.61 | □□□□□ -2.31 | | |
| Gli3 | Q61602 | Gm29352-201 | ENSMUST00000188054 | 544 nt | BASIC | 0.61 | □□□□□ -2.31 | | |
| Gli3 | Q61602 | Gm28337-201 | ENSMUST00000190425 | 666 nt | BASIC | 0.61 | □□□□□ -2.31 | | |
| Gli3 | Q61602 | Gm31123-201 | ENSMUST00000192094 | 666 nt | BASIC | 0.61 | □□□□□ -2.31 | | |
| Gli3 | Q61602 | Gm17771-201 | ENSMUST00000194477 | 1147 nt | BASIC | 0.61 | □□□□□ -2.31 | | |
| Gli3 | Q61602 | Gm44211-201 | ENSMUST00000204867 | 145 nt | BASIC | 0.61 | □□□□□ -2.31 | | |
| Gli3 | Q61602 | Gm45911-201 | ENSMUST00000211844 | 601 nt | TSL 3 BASIC | 0.61 | □□□□□ -2.31 | | |
| Gli3 | Q61602 | Gm25475-201 | ENSMUST00000082825 | 180 nt | BASIC | 0.61 | □□□□□ -2.31 | | |
| Gli3 | Q61602 | Gm24268-201 | ENSMUST00000082990 | 110 nt | BASIC | 0.61 | □□□□□ -2.31 | | |
| Gli3 | Q61602 | Gm23969-201 | ENSMUST00000083324 | 74 nt | BASIC | 0.61 | □□□□□ -2.31 | | |
| Gli3 | Q61602 | Mir340-201 | ENSMUST00000083483 | 98 nt | BASIC | 0.61 | □□□□□ -2.31 | | |
| Gli3 | Q61602 | Gm24338-201 | ENSMUST00000104205 | 127 nt | BASIC | 0.6 | □□□□□ -2.31 | | |
| Gli3 | Q61602 | Gm26249-201 | ENSMUST00000116708 | 118 nt | BASIC | 0.6 | □□□□□ -2.31 | | |
| Gli3 | Q61602 | Gm12806-201 | ENSMUST00000119384 | 268 nt | BASIC | 0.6 | □□□□□ -2.31 | | |
| Gli3 | Q61602 | Rpl31-ps6-201 | ENSMUST00000119959 | 378 nt | BASIC | 0.6 | □□□□□ -2.31 | | |
| Gli3 | Q61602 | Gm14922-201 | ENSMUST00000121131 | 163 nt | BASIC | 0.6 | □□□□□ -2.31 | | |
| Gli3 | Q61602 | Gm23277-201 | ENSMUST00000157914 | 136 nt | BASIC | 0.6 | □□□□□ -2.31 | | |
| Gli3 | Q61602 | 2310075C17Rik-201 | ENSMUST00000161216 | 326 nt | TSL 1 (best) BASIC | 0.6 | □□□□□ -2.31 | | |
| Gli3 | Q61602 | Gm24418-201 | ENSMUST00000177597 | 79 nt | BASIC | 0.6 | □□□□□ -2.31 | | |
| Gli3 | Q61602 | Gm24639-201 | ENSMUST00000178518 | 79 nt | BASIC | 0.6 | □□□□□ -2.31 | | |
| Gli3 | Q61602 | Gm23076-201 | ENSMUST00000179082 | 79 nt | BASIC | 0.6 | □□□□□ -2.31 | | |
| Gli3 | Q61602 | Gm25077-201 | ENSMUST00000179157 | 79 nt | BASIC | 0.6 | □□□□□ -2.31 | | |
| Gli3 | Q61602 | Gm29661-201 | ENSMUST00000186781 | 315 nt | BASIC | 0.6 | □□□□□ -2.31 | | |
| Gli3 | Q61602 | 1700031L13Rik-204 | ENSMUST00000188072 | 812 nt | TSL 5 BASIC | 0.6 | □□□□□ -2.31 | | |
| Gli3 | Q61602 | Gm29308-201 | ENSMUST00000188863 | 315 nt | BASIC | 0.6 | □□□□□ -2.31 | | |
| Gli3 | Q61602 | Gm44870-201 | ENSMUST00000207291 | 357 nt | BASIC | 0.6 | □□□□□ -2.31 | | |
| Gli3 | Q61602 | AC116465.1-201 | ENSMUST00000220324 | 235 nt | BASIC | 0.6 | □□□□□ -2.31 | | |
| Gli3 | Q61602 | Gm10264-201 | ENSMUST00000220589 | 429 nt | BASIC | 0.6 | □□□□□ -2.31 | | |
| Gli3 | Q61602 | AC116589.7-201 | ENSMUST00000221061 | 239 nt | BASIC | 0.6 | □□□□□ -2.31 | | |