Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Gm25020-201ENSMUST00000178071 107 ntBASIC3.06□□□□□ -1.92
Ddb1Q3U1J4 Gm3852-201ENSMUST00000182781 264 ntBASIC3.06□□□□□ -1.92
Ddb1Q3U1J4 Gm28647-201ENSMUST00000188416 197 ntBASIC3.06□□□□□ -1.92
Ddb1Q3U1J4 Gm43193-201ENSMUST00000197732 441 ntBASIC3.06□□□□□ -1.92
Ddb1Q3U1J4 Gm15235-201ENSMUST00000200572 194 ntBASIC3.06□□□□□ -1.92
Ddb1Q3U1J4 Gm45489-201ENSMUST00000211753 443 ntTSL 3 BASIC3.06□□□□□ -1.92
Ddb1Q3U1J4 AC123709.1-201ENSMUST00000224848 345 ntBASIC3.06□□□□□ -1.92
Ddb1Q3U1J4 AC154328.1-201ENSMUST00000225875 307 ntBASIC3.06□□□□□ -1.92
Ddb1Q3U1J4 AC122834.1-201ENSMUST00000227182 425 ntBASIC3.06□□□□□ -1.92
Ddb1Q3U1J4 Gm22744-201ENSMUST00000083444 65 ntBASIC3.06□□□□□ -1.92
Ddb1Q3U1J4 Gm43540-201ENSMUST00000196320 3848 ntBASIC3.06□□□□□ -1.92
Ddb1Q3U1J4 Vmn2r70-201ENSMUST00000168230 2565 ntAPPRIS P1 TSL 5 BASIC3.06□□□□□ -1.92
Ddb1Q3U1J4 Gm43379-201ENSMUST00000196253 7726 ntBASIC3.06□□□□□ -1.92
Ddb1Q3U1J4 Zfp985-201ENSMUST00000081742 2762 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
Ddb1Q3U1J4 Mir542-201ENSMUST00000102186 85 ntBASIC3.05□□□□□ -1.92
Ddb1Q3U1J4 Gm6444-201ENSMUST00000119611 458 ntBASIC3.05□□□□□ -1.92
Ddb1Q3U1J4 Gm16326-201ENSMUST00000162843 414 ntBASIC3.05□□□□□ -1.92
Ddb1Q3U1J4 Mir8103-201ENSMUST00000183945 107 ntBASIC3.05□□□□□ -1.92
Ddb1Q3U1J4 Mir7225-201ENSMUST00000184178 54 ntBASIC3.05□□□□□ -1.92
Ddb1Q3U1J4 Gm27991-201ENSMUST00000184804 137 ntBASIC3.05□□□□□ -1.92
Ddb1Q3U1J4 Gm37479-201ENSMUST00000194169 3841 ntBASIC3.05□□□□□ -1.92
Ddb1Q3U1J4 CT954323.1-201ENSMUST00000222774 229 ntBASIC3.05□□□□□ -1.92
Ddb1Q3U1J4 Gm6030-201ENSMUST00000078768 402 ntBASIC3.05□□□□□ -1.92
Ddb1Q3U1J4 Olfr136-205ENSMUST00000216963 1821 ntAPPRIS P1 TSL 5 BASIC3.05□□□□□ -1.92
Ddb1Q3U1J4 Gm37895-201ENSMUST00000192448 4550 ntBASIC3.04□□□□□ -1.92
Ddb1Q3U1J4 Uty-201ENSMUST00000069309 5208 ntAPPRIS P3 TSL 1 (best) BASIC3.04□□□□□ -1.92
Ddb1Q3U1J4 Gm8935-201ENSMUST00000066794 2798 ntBASIC3.04□□□□□ -1.92
Ddb1Q3U1J4 Gm45461-201ENSMUST00000211726 4535 ntBASIC3.04□□□□□ -1.92
Ddb1Q3U1J4 Traj37-201ENSMUST00000103705 60 ntAPPRIS P1 BASIC3.04□□□□□ -1.92
Ddb1Q3U1J4 Gm22784-201ENSMUST00000104088 132 ntBASIC3.04□□□□□ -1.92
Ddb1Q3U1J4 n-R5s200-201ENSMUST00000104194 113 ntBASIC3.04□□□□□ -1.92
Ddb1Q3U1J4 Gm25526-201ENSMUST00000104332 132 ntBASIC3.04□□□□□ -1.92
Ddb1Q3U1J4 Gm24911-201ENSMUST00000157292 136 ntBASIC3.04□□□□□ -1.92
Ddb1Q3U1J4 Gm22145-201ENSMUST00000157396 148 ntBASIC3.04□□□□□ -1.92
Ddb1Q3U1J4 Gm23409-201ENSMUST00000158516 237 ntBASIC3.04□□□□□ -1.92
Ddb1Q3U1J4 Obox4-ps37-201ENSMUST00000177223 276 ntBASIC3.04□□□□□ -1.92
Ddb1Q3U1J4 Gm25235-201ENSMUST00000179933 107 ntBASIC3.04□□□□□ -1.92
Ddb1Q3U1J4 Gm27527-201ENSMUST00000183903 99 ntBASIC3.04□□□□□ -1.92
Ddb1Q3U1J4 Gm6060-201ENSMUST00000188671 251 ntBASIC3.04□□□□□ -1.92
Ddb1Q3U1J4 Gm36546-201ENSMUST00000206372 230 ntTSL 5 BASIC3.04□□□□□ -1.92
Ddb1Q3U1J4 Gm45002-201ENSMUST00000208045 120 ntBASIC3.04□□□□□ -1.92
Ddb1Q3U1J4 4930598N05Rik-207ENSMUST00000208997 83 ntTSL 5 BASIC3.04□□□□□ -1.92
Ddb1Q3U1J4 AC122428.1-201ENSMUST00000213709 217 ntTSL 3 BASIC3.04□□□□□ -1.92
Ddb1Q3U1J4 AC122194.1-201ENSMUST00000220549 293 ntBASIC3.04□□□□□ -1.92
Ddb1Q3U1J4 Snord47-201ENSMUST00000083034 77 ntBASIC3.04□□□□□ -1.92
Ddb1Q3U1J4 Gm25199-201ENSMUST00000083095 104 ntBASIC3.04□□□□□ -1.92
Ddb1Q3U1J4 Zfp160-201ENSMUST00000088811 3791 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
Ddb1Q3U1J4 Vmn1r178-205ENSMUST00000227993 2518 ntAPPRIS P1 BASIC3.03□□□□□ -1.92
Ddb1Q3U1J4 Gm26473-201ENSMUST00000116763 127 ntBASIC3.03□□□□□ -1.92
Ddb1Q3U1J4 Gm12513-201ENSMUST00000118617 352 ntBASIC3.03□□□□□ -1.92
Ddb1Q3U1J4 n-R5s159-201ENSMUST00000122681 120 ntBASIC3.03□□□□□ -1.92
Ddb1Q3U1J4 Gm26279-201ENSMUST00000157095 102 ntBASIC3.03□□□□□ -1.92
Ddb1Q3U1J4 Gm23600-201ENSMUST00000157260 71 ntBASIC3.03□□□□□ -1.92
Ddb1Q3U1J4 Gm23892-201ENSMUST00000158105 130 ntBASIC3.03□□□□□ -1.92
Ddb1Q3U1J4 Gm22450-201ENSMUST00000179641 107 ntBASIC3.03□□□□□ -1.92
Ddb1Q3U1J4 Gm25473-201ENSMUST00000180191 107 ntBASIC3.03□□□□□ -1.92
Ddb1Q3U1J4 Gm23190-201ENSMUST00000180307 64 ntBASIC3.03□□□□□ -1.92
Ddb1Q3U1J4 Mir6540-201ENSMUST00000184886 108 ntBASIC3.03□□□□□ -1.92
Ddb1Q3U1J4 Topbp1-ps1-201ENSMUST00000187120 184 ntBASIC3.03□□□□□ -1.92
Ddb1Q3U1J4 Gm44385-201ENSMUST00000198781 81 ntBASIC3.03□□□□□ -1.92
Ddb1Q3U1J4 AC141895.1-201ENSMUST00000218141 273 ntBASIC3.03□□□□□ -1.92
Ddb1Q3U1J4 Gm24856-201ENSMUST00000082809 107 ntBASIC3.03□□□□□ -1.92
Ddb1Q3U1J4 Gm23678-201ENSMUST00000083157 107 ntBASIC3.03□□□□□ -1.92
Ddb1Q3U1J4 Gm26071-201ENSMUST00000083261 107 ntBASIC3.03□□□□□ -1.92
Ddb1Q3U1J4 Gm23461-201ENSMUST00000083265 107 ntBASIC3.03□□□□□ -1.92
Ddb1Q3U1J4 Gm22973-201ENSMUST00000083298 191 ntBASIC3.03□□□□□ -1.92
Ddb1Q3U1J4 Gm24521-201ENSMUST00000083958 107 ntBASIC3.03□□□□□ -1.92
Ddb1Q3U1J4 Gm38255-201ENSMUST00000194910 2996 ntBASIC3.03□□□□□ -1.93
Ddb1Q3U1J4 Olfr974-202ENSMUST00000213246 3561 ntAPPRIS P1 TSL 2 BASIC3.02□□□□□ -1.93
Ddb1Q3U1J4 Rgs1-208ENSMUST00000189061 3841 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
Ddb1Q3U1J4 Olfr830-202ENSMUST00000212723 3105 ntAPPRIS ALT2 TSL 5 BASIC3.02□□□□□ -1.93
Ddb1Q3U1J4 Mir541-201ENSMUST00000102097 90 ntBASIC3.02□□□□□ -1.93
Ddb1Q3U1J4 Gm25938-201ENSMUST00000104139 166 ntBASIC3.02□□□□□ -1.93
Ddb1Q3U1J4 Gm15365-201ENSMUST00000122392 300 ntBASIC3.02□□□□□ -1.93
Ddb1Q3U1J4 Gm28020-201ENSMUST00000157739 67 ntBASIC3.02□□□□□ -1.93
Ddb1Q3U1J4 Gm24750-201ENSMUST00000157843 104 ntBASIC3.02□□□□□ -1.93
Ddb1Q3U1J4 Gm25024-201ENSMUST00000179667 104 ntBASIC3.02□□□□□ -1.93
Ddb1Q3U1J4 Gm37579-201ENSMUST00000194291 142 ntBASIC3.02□□□□□ -1.93
Ddb1Q3U1J4 Gm37754-201ENSMUST00000194406 452 ntTSL 5 BASIC3.02□□□□□ -1.93
Ddb1Q3U1J4 Gm44024-201ENSMUST00000203008 476 ntBASIC3.02□□□□□ -1.93
Ddb1Q3U1J4 Gm26265-201ENSMUST00000083277 135 ntBASIC3.02□□□□□ -1.93
Ddb1Q3U1J4 Mir181b-2-201ENSMUST00000083644 89 ntBASIC3.02□□□□□ -1.93
Ddb1Q3U1J4 Gm7173-205ENSMUST00000197180 9412 ntAPPRIS ALT2 TSL 5 BASIC3.02□□□□□ -1.93
Ddb1Q3U1J4 Olfr681-203ENSMUST00000215517 4324 ntAPPRIS P1 TSL 5 BASIC3.02□□□□□ -1.93
Ddb1Q3U1J4 Olfr218-203ENSMUST00000216603 3623 ntAPPRIS P1 TSL 5 BASIC3.01□□□□□ -1.93
Ddb1Q3U1J4 Gm12351-201ENSMUST00000118727 292 ntBASIC3.01□□□□□ -1.93
Ddb1Q3U1J4 Gm14922-201ENSMUST00000121131 163 ntBASIC3.01□□□□□ -1.93
Ddb1Q3U1J4 n-R5s164-201ENSMUST00000122664 112 ntBASIC3.01□□□□□ -1.93
Ddb1Q3U1J4 Trav20-201ENSMUST00000142754 347 ntBASIC3.01□□□□□ -1.93
Ddb1Q3U1J4 Gm26277-201ENSMUST00000157097 152 ntBASIC3.01□□□□□ -1.93
Ddb1Q3U1J4 Gm24392-201ENSMUST00000158136 103 ntBASIC3.01□□□□□ -1.93
Ddb1Q3U1J4 Gm24667-201ENSMUST00000158938 103 ntBASIC3.01□□□□□ -1.93
Ddb1Q3U1J4 Gm23289-201ENSMUST00000175615 108 ntBASIC3.01□□□□□ -1.93
Ddb1Q3U1J4 Gm22800-201ENSMUST00000175627 94 ntBASIC3.01□□□□□ -1.93
Ddb1Q3U1J4 Gm27761-201ENSMUST00000184091 131 ntBASIC3.01□□□□□ -1.93
Ddb1Q3U1J4 Gm6105-201ENSMUST00000200580 624 ntBASIC3.01□□□□□ -1.93
Ddb1Q3U1J4 Gm20144-201ENSMUST00000203031 165 ntBASIC3.01□□□□□ -1.93
Ddb1Q3U1J4 Gm45907-201ENSMUST00000213023 193 ntBASIC3.01□□□□□ -1.93
Ddb1Q3U1J4 Gm31025-201ENSMUST00000222553 482 ntTSL 5 BASIC3.01□□□□□ -1.93
Ddb1Q3U1J4 AC027184.1-201ENSMUST00000226991 424 ntBASIC3.01□□□□□ -1.93
Retrieved 100 of 76,532 protein–RNA pairs in 161.9 ms